RNA–Protein interactions for RNA: ENST00000514308.3

PDLIM3-210, Transcript of PDZ and LIM domain 3, humanhuman

TSL 2

Gene PDLIM3, Length 906 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-210ENST00000514308 ZFYVE9O95405 1425 aa19.81■□□□□ 0.76
PDLIM3-210ENST00000514308 RIMS2Q9UQ26 1411 aa19.81■□□□□ 0.76
PDLIM3-210ENST00000514308 LRRC7Q96NW7 1537 aa19.79■□□□□ 0.76
PDLIM3-210ENST00000514308 PLEKHG1Q9ULL1 1385 aa19.78■□□□□ 0.76
PDLIM3-210ENST00000514308 SCAF1Q9H7N4 1312 aaKnown RBP19.76■□□□□ 0.75
PDLIM3-210ENST00000514308 KCNA6P17658 529 aa19.76■□□□□ 0.75
PDLIM3-210ENST00000514308 SLC4A1APQ9BWU0 796 aaKnown RBP19.76■□□□□ 0.75
PDLIM3-210ENST00000514308 PIP4K2BP78356 416 aa19.75■□□□□ 0.75
PDLIM3-210ENST00000514308 STRCP1A6NGW2 1772 aa19.75■□□□□ 0.75
PDLIM3-210ENST00000514308 SPHKAPQ2M3C7 1700 aa19.73■□□□□ 0.75
PDLIM3-210ENST00000514308 NUTM2DQ5VT03 806 aaPredicted RBP19.73■□□□□ 0.75
PDLIM3-210ENST00000514308 ZNF326Q5BKZ1 582 aaKnown RBP19.72■□□□□ 0.75
PDLIM3-210ENST00000514308 MYO5BQ9ULV0 1848 aa19.72■□□□□ 0.75
PDLIM3-210ENST00000514308 TRPM2O94759 1503 aa19.71■□□□□ 0.75
PDLIM3-210ENST00000514308 TBX22Q9Y458 520 aa19.71■□□□□ 0.75
PDLIM3-210ENST00000514308 ACIN1Q9UKV3 1341 aaKnown RBP19.7■□□□□ 0.74
PDLIM3-210ENST00000514308 PROSER2Q86WR7 435 aaPredicted RBP19.69■□□□□ 0.74
PDLIM3-210ENST00000514308 TMEM94Q12767 1356 aa19.69■□□□□ 0.74
PDLIM3-210ENST00000514308 NKTRP30414 1462 aaKnown RBP19.68■□□□□ 0.74
PDLIM3-210ENST00000514308 ADAMTS13Q76LX8 1427 aa19.66■□□□□ 0.74
PDLIM3-210ENST00000514308 NWD1Q149M9 1564 aa19.66■□□□□ 0.74
PDLIM3-210ENST00000514308 CLTCL1P53675 1640 aa19.65■□□□□ 0.74
PDLIM3-210ENST00000514308 HSPA1LP34931 641 aa19.64■□□□□ 0.73
PDLIM3-210ENST00000514308 TRIM26Q12899 539 aaPredicted RBP19.64■□□□□ 0.73
PDLIM3-210ENST00000514308 MPHOSPH9Q99550 1183 aa19.64■□□□□ 0.73
PDLIM3-210ENST00000514308 PIK3R4Q99570 1358 aa19.64■□□□□ 0.73
PDLIM3-210ENST00000514308 SETD5Q9C0A6 1442 aa19.64■□□□□ 0.73
PDLIM3-210ENST00000514308 DIP2AQ14689 1571 aa19.64■□□□□ 0.73
PDLIM3-210ENST00000514308 ALKQ9UM73 1620 aa19.63■□□□□ 0.73
PDLIM3-210ENST00000514308 FOXD1Q16676 465 aa19.62■□□□□ 0.73
PDLIM3-210ENST00000514308 RBM33Q96EV2 1170 aaKnown RBP19.62■□□□□ 0.73
PDLIM3-210ENST00000514308 PHF23Q9BUL5 403 aaPredicted RBP19.62■□□□□ 0.73
PDLIM3-210ENST00000514308 MSH6P52701 1360 aa19.6■□□□□ 0.73
PDLIM3-210ENST00000514308 RPGRIP1LQ68CZ1 1315 aa19.59■□□□□ 0.73
PDLIM3-210ENST00000514308 VGFO15240 615 aaPredicted RBP19.59■□□□□ 0.73
PDLIM3-210ENST00000514308 CCDC144AA2RUR9 1427 aa19.59■□□□□ 0.73
PDLIM3-210ENST00000514308 DISP3Q9P2K9 1392 aa19.58■□□□□ 0.73
PDLIM3-210ENST00000514308 SETBP1Q9Y6X0 1596 aa19.58■□□□□ 0.73
PDLIM3-210ENST00000514308 NEXMIFQ5QGS0 1516 aa19.58■□□□□ 0.73
PDLIM3-210ENST00000514308 PCGF6Q9BYE7 350 aa19.58■□□□□ 0.72
PDLIM3-210ENST00000514308 AMOTL2Q9Y2J4 779 aa19.58■□□□□ 0.72
PDLIM3-210ENST00000514308 KIF1BO60333 1816 aa19.58■□□□□ 0.72
PDLIM3-210ENST00000514308 XIRP1Q702N8 1843 aaKnown RBP19.58■□□□□ 0.72
PDLIM3-210ENST00000514308 C14orf37Q86TY3 774 aa19.57■□□□□ 0.72
PDLIM3-210ENST00000514308 CHD2O14647 1828 aaKnown RBP19.57■□□□□ 0.72
PDLIM3-210ENST00000514308 RAB3GAP2Q9H2M9 1393 aa19.57■□□□□ 0.72
PDLIM3-210ENST00000514308 NCOA3Q9Y6Q9 1424 aa19.56■□□□□ 0.72
PDLIM3-210ENST00000514308 FAM135BQ49AJ0 1406 aa19.54■□□□□ 0.72
PDLIM3-210ENST00000514308 NRXN3Q9Y4C0 1643 aa19.53■□□□□ 0.72
PDLIM3-210ENST00000514308 PTPRUQ92729 1446 aa19.52■□□□□ 0.72
PDLIM3-210ENST00000514308 METP08581 1390 aa19.52■□□□□ 0.72
PDLIM3-210ENST00000514308 C19orf44Q9H6X5 657 aa19.51■□□□□ 0.71
PDLIM3-210ENST00000514308 SLAIN2Q9P270 581 aa19.51■□□□□ 0.71
PDLIM3-210ENST00000514308 ATF3P18847 181 aa19.49■□□□□ 0.71
PDLIM3-210ENST00000514308 RGL3Q3MIN7 710 aa19.49■□□□□ 0.71
PDLIM3-210ENST00000514308 CADPS2Q86UW7 1296 aa19.49■□□□□ 0.71
PDLIM3-210ENST00000514308 SPATA31E1Q6ZUB1 1445 aa19.48■□□□□ 0.71
PDLIM3-210ENST00000514308 HRCP23327 699 aa19.47■□□□□ 0.71
PDLIM3-210ENST00000514308 ANKRD30BQ9BXX2 1392 aa19.46■□□□□ 0.71
PDLIM3-210ENST00000514308 XRN1Q8IZH2 1706 aaKnown RBP19.45■□□□□ 0.7
PDLIM3-210ENST00000514308 ROBO1Q9Y6N7 1651 aa19.43■□□□□ 0.7
PDLIM3-210ENST00000514308 DCCP43146 1447 aa19.42■□□□□ 0.7
PDLIM3-210ENST00000514308 PPLO60437 1756 aa19.42■□□□□ 0.7
PDLIM3-210ENST00000514308 ADGRF5Q8IZF2 1346 aa19.42■□□□□ 0.7
PDLIM3-210ENST00000514308 MED1Q15648 1581 aaPredicted RBP19.4■□□□□ 0.7
PDLIM3-210ENST00000514308 PTCH1Q13635 1447 aa19.4■□□□□ 0.7
PDLIM3-210ENST00000514308 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.39■□□□□ 0.7
PDLIM3-210ENST00000514308 ADGRL3Q9HAR2 1447 aa19.39■□□□□ 0.69
PDLIM3-210ENST00000514308 PRAG1Q86YV5 1406 aa19.37■□□□□ 0.69
PDLIM3-210ENST00000514308 ROBO2Q9HCK4 1378 aa19.37■□□□□ 0.69
PDLIM3-210ENST00000514308 ILDR2Q71H61 639 aa19.36■□□□□ 0.69
PDLIM3-210ENST00000514308 SETD1AO15047 1707 aaKnown RBP19.36■□□□□ 0.69
PDLIM3-210ENST00000514308 PIK3C2GO75747 1445 aa19.35■□□□□ 0.69
PDLIM3-210ENST00000514308 BRINP3Q76B58 766 aa19.33■□□□□ 0.68
PDLIM3-210ENST00000514308 IFT172Q9UG01 1749 aa19.33■□□□□ 0.68
PDLIM3-210ENST00000514308 MST1RQ04912 1400 aa19.33■□□□□ 0.68
PDLIM3-210ENST00000514308 STK26Q9P289 416 aa19.32■□□□□ 0.68
PDLIM3-210ENST00000514308 MYOM2P54296 1465 aa19.32■□□□□ 0.68
PDLIM3-210ENST00000514308 JCADQ9P266 1359 aa19.32■□□□□ 0.68
PDLIM3-210ENST00000514308 LRPPRCP42704 1394 aaKnown RBP19.31■□□□□ 0.68
PDLIM3-210ENST00000514308 TMEM132EQ6IEE7 984 aa19.3■□□□□ 0.68
PDLIM3-210ENST00000514308 C14orf93Q9H972 538 aaKnown RBP19.3■□□□□ 0.68
PDLIM3-210ENST00000514308 PHLPP1O60346 1717 aa19.3■□□□□ 0.68
PDLIM3-210ENST00000514308 NRXN1Q9ULB1 1477 aa19.29■□□□□ 0.68
PDLIM3-210ENST00000514308 TECPR2O15040 1411 aa19.29■□□□□ 0.68
PDLIM3-210ENST00000514308 ABCC11Q96J66 1382 aa19.29■□□□□ 0.68
PDLIM3-210ENST00000514308 NALCNQ8IZF0 1738 aa19.28■□□□□ 0.68
PDLIM3-210ENST00000514308 ASXL1Q8IXJ9 1541 aa19.28■□□□□ 0.68
PDLIM3-210ENST00000514308 AHDC1Q5TGY3 1603 aaPredicted RBP19.28■□□□□ 0.68
PDLIM3-210ENST00000514308 YTHDC2Q9H6S0 1430 aaKnown RBP19.26■□□□□ 0.67
PDLIM3-210ENST00000514308 COL16A1Q07092 1604 aaPredicted RBP19.26■□□□□ 0.67
PDLIM3-210ENST00000514308 CFAP70Q5T0N1 1121 aa19.26■□□□□ 0.67
PDLIM3-210ENST00000514308 DCAF11Q8TEB1 546 aa19.26■□□□□ 0.67
PDLIM3-210ENST00000514308 STAC3Q96MF2 364 aa19.26■□□□□ 0.67
PDLIM3-210ENST00000514308 C1orf167Q5SNV9 1468 aa19.25■□□□□ 0.67
PDLIM3-210ENST00000514308 DHX57Q6P158 1386 aaKnown RBP19.25■□□□□ 0.67
PDLIM3-210ENST00000514308 WAPLQ7Z5K2 1190 aa19.25■□□□□ 0.67
PDLIM3-210ENST00000514308 SOCS7O14512 581 aa19.24■□□□□ 0.67
PDLIM3-210ENST00000514308 KDM2AQ9Y2K7 1162 aa19.24■□□□□ 0.67
PDLIM3-210ENST00000514308 SPATA31A6Q5VVP1 1343 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms