RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 KDM2AQ9Y2K7 1162 aa18.63■□□□□ 0.57
LIMCH1-220ENST00000514190 RPGRIP1LQ68CZ1 1315 aa18.63■□□□□ 0.57
LIMCH1-220ENST00000514190 ZNF326Q5BKZ1 582 aaKnown RBP18.62■□□□□ 0.57
LIMCH1-220ENST00000514190 STAG3Q9UJ98 1225 aa18.62■□□□□ 0.57
LIMCH1-220ENST00000514190 ADGRB3O60242 1522 aa18.62■□□□□ 0.57
LIMCH1-220ENST00000514190 KIF1BO60333 1816 aa18.6■□□□□ 0.57
LIMCH1-220ENST00000514190 LTBP4Q8N2S1 1624 aa18.6■□□□□ 0.57
LIMCH1-220ENST00000514190 NBPF8Q3BBV2 869 aa18.59■□□□□ 0.57
LIMCH1-220ENST00000514190 UBR1Q8IWV7 1749 aa18.59■□□□□ 0.57
LIMCH1-220ENST00000514190 TMEM131LA2VDJ0 1609 aa18.57■□□□□ 0.56
LIMCH1-220ENST00000514190 ANKLE2Q86XL3 938 aa18.57■□□□□ 0.56
LIMCH1-220ENST00000514190 ZNF335Q9H4Z2 1342 aaPredicted RBP18.54■□□□□ 0.56
LIMCH1-220ENST00000514190 MED14O60244 1454 aa18.54■□□□□ 0.56
LIMCH1-220ENST00000514190 VGFO15240 615 aaPredicted RBP18.54■□□□□ 0.56
LIMCH1-220ENST00000514190 PRAG1Q86YV5 1406 aa18.53■□□□□ 0.56
LIMCH1-220ENST00000514190 ADGRF5Q8IZF2 1346 aa18.52■□□□□ 0.56
LIMCH1-220ENST00000514190 NPHP4O75161 1426 aaPredicted RBP18.52■□□□□ 0.56
LIMCH1-220ENST00000514190 HDGFP51858 240 aaKnown RBP18.52■□□□□ 0.56
LIMCH1-220ENST00000514190 KDM5AP29375 1690 aaKnown RBP18.52■□□□□ 0.56
LIMCH1-220ENST00000514190 MYOM2P54296 1465 aa18.52■□□□□ 0.55
LIMCH1-220ENST00000514190 IQSEC2Q5JU85 1478 aa18.52■□□□□ 0.55
LIMCH1-220ENST00000514190 IQGAP1P46940 1657 aa18.51■□□□□ 0.55
LIMCH1-220ENST00000514190 ZFYVE9O95405 1425 aa18.51■□□□□ 0.55
LIMCH1-220ENST00000514190 SLIT1O75093 1534 aa18.51■□□□□ 0.55
LIMCH1-220ENST00000514190 ARHGAP23Q9P227 1491 aa18.51■□□□□ 0.55
LIMCH1-220ENST00000514190 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.5■□□□□ 0.55
LIMCH1-220ENST00000514190 TMEM2Q9UHN6 1383 aa18.5■□□□□ 0.55
LIMCH1-220ENST00000514190 RIMS2Q9UQ26 1411 aa18.49■□□□□ 0.55
LIMCH1-220ENST00000514190 NEXMIFQ5QGS0 1516 aa18.49■□□□□ 0.55
LIMCH1-220ENST00000514190 NUTM2DQ5VT03 806 aaPredicted RBP18.49■□□□□ 0.55
LIMCH1-220ENST00000514190 SCAF11Q99590 1463 aaKnown RBP18.48■□□□□ 0.55
LIMCH1-220ENST00000514190 NRXN1Q9ULB1 1477 aa18.48■□□□□ 0.55
LIMCH1-220ENST00000514190 IFT172Q9UG01 1749 aa18.46■□□□□ 0.55
LIMCH1-220ENST00000514190 MYO5BQ9ULV0 1848 aa18.46■□□□□ 0.55
LIMCH1-220ENST00000514190 PPLO60437 1756 aa18.45■□□□□ 0.54
LIMCH1-220ENST00000514190 C14orf93Q9H972 538 aaKnown RBP18.45■□□□□ 0.54
LIMCH1-220ENST00000514190 RALGAPBQ86X10 1494 aa18.45■□□□□ 0.54
LIMCH1-220ENST00000514190 LTKP29376 864 aa18.44■□□□□ 0.54
LIMCH1-220ENST00000514190 NBPF1Q3BBV0 1214 aa18.44■□□□□ 0.54
LIMCH1-220ENST00000514190 TXNDC2Q86VQ3 553 aa18.44■□□□□ 0.54
LIMCH1-220ENST00000514190 EID1Q9Y6B2 187 aa18.44■□□□□ 0.54
LIMCH1-220ENST00000514190 CPS1P31327 1500 aa18.44■□□□□ 0.54
LIMCH1-220ENST00000514190 PIK3C2GO75747 1445 aa18.43■□□□□ 0.54
LIMCH1-220ENST00000514190 CFAP70Q5T0N1 1121 aa18.43■□□□□ 0.54
LIMCH1-220ENST00000514190 GPRASP1Q5JY77 1395 aa18.42■□□□□ 0.54
LIMCH1-220ENST00000514190 CARD11Q9BXL7 1154 aa18.41■□□□□ 0.54
LIMCH1-220ENST00000514190 ROCK2O75116 1388 aaKnown RBP18.41■□□□□ 0.54
LIMCH1-220ENST00000514190 TRPM1Q7Z4N2 1603 aa18.38■□□□□ 0.53
LIMCH1-220ENST00000514190 EIF4G2P78344 907 aaKnown RBP eCLIP18.38■□□□□ 0.53
LIMCH1-220ENST00000514190 PLEKHG1Q9ULL1 1385 aa18.37■□□□□ 0.53
LIMCH1-220ENST00000514190 STRCP1A6NGW2 1772 aa18.37■□□□□ 0.53
LIMCH1-220ENST00000514190 KIAA1210Q9ULL0 1709 aa18.35■□□□□ 0.53
LIMCH1-220ENST00000514190 HSPA5P11021 654 aaKnown RBP18.35■□□□□ 0.53
LIMCH1-220ENST00000514190 TMEM132EQ6IEE7 984 aa18.34■□□□□ 0.53
LIMCH1-220ENST00000514190 BCANQ96GW7 911 aa18.34■□□□□ 0.53
LIMCH1-220ENST00000514190 SENP3Q9H4L4 574 aaPredicted RBP18.34■□□□□ 0.53
LIMCH1-220ENST00000514190 USP47Q96K76 1375 aa18.33■□□□□ 0.53
LIMCH1-220ENST00000514190 ZNF316A6NFI3 1004 aaPredicted RBP18.33■□□□□ 0.52
LIMCH1-220ENST00000514190 UBAP1LF5GYI3 381 aa18.33■□□□□ 0.52
LIMCH1-220ENST00000514190 ALKQ9UM73 1620 aa18.31■□□□□ 0.52
LIMCH1-220ENST00000514190 SETBP1Q9Y6X0 1596 aa18.31■□□□□ 0.52
LIMCH1-220ENST00000514190 TBX22Q9Y458 520 aa18.31■□□□□ 0.52
LIMCH1-220ENST00000514190 LRRC7Q96NW7 1537 aa18.31■□□□□ 0.52
LIMCH1-220ENST00000514190 HIRIP3Q9BW71 556 aaPredicted RBP18.3■□□□□ 0.52
LIMCH1-220ENST00000514190 ADAMTS13Q76LX8 1427 aa18.3■□□□□ 0.52
LIMCH1-220ENST00000514190 LAMC1P11047 1609 aa18.3■□□□□ 0.52
LIMCH1-220ENST00000514190 ADGRB1O14514 1584 aa18.3■□□□□ 0.52
LIMCH1-220ENST00000514190 ST20-MTHFSA0A0A6YYL1 179 aa18.28■□□□□ 0.52
LIMCH1-220ENST00000514190 SLC26A8Q96RN1 970 aa18.28■□□□□ 0.52
LIMCH1-220ENST00000514190 NRXN3Q9Y4C0 1643 aa18.27■□□□□ 0.52
LIMCH1-220ENST00000514190 METP08581 1390 aa18.27■□□□□ 0.51
LIMCH1-220ENST00000514190 ASXL1Q8IXJ9 1541 aa18.25■□□□□ 0.51
LIMCH1-220ENST00000514190 TOM1O60784 492 aa18.25■□□□□ 0.51
LIMCH1-220ENST00000514190 STK26Q9P289 416 aa18.25■□□□□ 0.51
LIMCH1-220ENST00000514190 TRAK1Q9UPV9 953 aa18.25■□□□□ 0.51
LIMCH1-220ENST00000514190 LRPPRCP42704 1394 aaKnown RBP18.25■□□□□ 0.51
LIMCH1-220ENST00000514190 YTHDC2Q9H6S0 1430 aaKnown RBP18.24■□□□□ 0.51
LIMCH1-220ENST00000514190 KCNA6P17658 529 aa18.24■□□□□ 0.51
LIMCH1-220ENST00000514190 NWD1Q149M9 1564 aa18.24■□□□□ 0.51
LIMCH1-220ENST00000514190 EIF3AQ14152 1382 aaKnown RBP18.23■□□□□ 0.51
LIMCH1-220ENST00000514190 ABCC11Q96J66 1382 aa18.23■□□□□ 0.51
LIMCH1-220ENST00000514190 XIRP1Q702N8 1843 aaKnown RBP18.23■□□□□ 0.51
LIMCH1-220ENST00000514190 DIP2AQ14689 1571 aa18.21■□□□□ 0.51
LIMCH1-220ENST00000514190 NKTRP30414 1462 aaKnown RBP18.21■□□□□ 0.51
LIMCH1-220ENST00000514190 SETD1AO15047 1707 aaKnown RBP18.21■□□□□ 0.51
LIMCH1-220ENST00000514190 SIRT1Q96EB6 747 aa18.21■□□□□ 0.51
LIMCH1-220ENST00000514190 TESK2Q96S53 571 aa18.21■□□□□ 0.51
LIMCH1-220ENST00000514190 PIK3R4Q99570 1358 aa18.2■□□□□ 0.5
LIMCH1-220ENST00000514190 PIP4K2BP78356 416 aa18.2■□□□□ 0.5
LIMCH1-220ENST00000514190 SCAF1Q9H7N4 1312 aaKnown RBP18.2■□□□□ 0.5
LIMCH1-220ENST00000514190 CHD2O14647 1828 aaKnown RBP18.19■□□□□ 0.5
LIMCH1-220ENST00000514190 CENPJQ9HC77 1338 aaPredicted RBP18.19■□□□□ 0.5
LIMCH1-220ENST00000514190 C11orf95C9JLR9 678 aaPredicted RBP18.18■□□□□ 0.5
LIMCH1-220ENST00000514190 SLC24A1O60721 1099 aa18.18■□□□□ 0.5
LIMCH1-220ENST00000514190 TMEM94Q12767 1356 aa18.17■□□□□ 0.5
LIMCH1-220ENST00000514190 AMOTL2Q9Y2J4 779 aa18.17■□□□□ 0.5
LIMCH1-220ENST00000514190 TECPR2O15040 1411 aa18.16■□□□□ 0.5
LIMCH1-220ENST00000514190 PTPRUQ92729 1446 aa18.16■□□□□ 0.5
LIMCH1-220ENST00000514190 PROSER2Q86WR7 435 aaPredicted RBP18.16■□□□□ 0.5
LIMCH1-220ENST00000514190 PRAM1Q96QH2 718 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms