RNA–Protein interactions for RNA: ENST00000513664.1

PDGFC-209, Transcript of platelet derived growth factor C, humanhuman

TSL 3

Gene PDGFC, Length 597 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-209ENST00000513664 RIMS2Q9UQ26 1411 aa13.86□□□□□ -0.19
PDGFC-209ENST00000513664 RPGRIP1LQ68CZ1 1315 aa13.86□□□□□ -0.19
PDGFC-209ENST00000513664 MYO5BQ9ULV0 1848 aa13.85□□□□□ -0.19
PDGFC-209ENST00000513664 NPHP4O75161 1426 aaPredicted RBP13.85□□□□□ -0.19
PDGFC-209ENST00000513664 PPP1R15AO75807 674 aaPredicted RBP13.85□□□□□ -0.19
PDGFC-209ENST00000513664 ZNF326Q5BKZ1 582 aaKnown RBP13.85□□□□□ -0.19
PDGFC-209ENST00000513664 LTKP29376 864 aa13.84□□□□□ -0.19
PDGFC-209ENST00000513664 IQGAP1P46940 1657 aa13.84□□□□□ -0.19
PDGFC-209ENST00000513664 VGFO15240 615 aaPredicted RBP13.82□□□□□ -0.2
PDGFC-209ENST00000513664 PLEKHG1Q9ULL1 1385 aa13.82□□□□□ -0.2
PDGFC-209ENST00000513664 SPATA31E1Q6ZUB1 1445 aa13.81□□□□□ -0.2
PDGFC-209ENST00000513664 DHX57Q6P158 1386 aaKnown RBP13.81□□□□□ -0.2
PDGFC-209ENST00000513664 NEXMIFQ5QGS0 1516 aa13.8□□□□□ -0.2
PDGFC-209ENST00000513664 BCANQ96GW7 911 aa13.79□□□□□ -0.2
PDGFC-209ENST00000513664 STAC3Q96MF2 364 aa13.79□□□□□ -0.2
PDGFC-209ENST00000513664 RGL3Q3MIN7 710 aa13.78□□□□□ -0.2
PDGFC-209ENST00000513664 DIP2AQ14689 1571 aa13.78□□□□□ -0.2
PDGFC-209ENST00000513664 PPLO60437 1756 aa13.77□□□□□ -0.21
PDGFC-209ENST00000513664 SETBP1Q9Y6X0 1596 aa13.76□□□□□ -0.21
PDGFC-209ENST00000513664 TBX22Q9Y458 520 aa13.76□□□□□ -0.21
PDGFC-209ENST00000513664 IFT172Q9UG01 1749 aa13.75□□□□□ -0.21
PDGFC-209ENST00000513664 PIK3R4Q99570 1358 aa13.74□□□□□ -0.21
PDGFC-209ENST00000513664 CLSPNQ9HAW4 1339 aa13.74□□□□□ -0.21
PDGFC-209ENST00000513664 NUTM2DQ5VT03 806 aaPredicted RBP13.74□□□□□ -0.21
PDGFC-209ENST00000513664 MYOM2P54296 1465 aa13.74□□□□□ -0.21
PDGFC-209ENST00000513664 SLC26A8Q96RN1 970 aa13.73□□□□□ -0.21
PDGFC-209ENST00000513664 CPS1P31327 1500 aa13.73□□□□□ -0.21
PDGFC-209ENST00000513664 ADAMTS13Q76LX8 1427 aa13.72□□□□□ -0.21
PDGFC-209ENST00000513664 ZNF335Q9H4Z2 1342 aaPredicted RBP13.71□□□□□ -0.21
PDGFC-209ENST00000513664 KCNA6P17658 529 aa13.7□□□□□ -0.22
PDGFC-209ENST00000513664 DCAF11Q8TEB1 546 aa13.7□□□□□ -0.22
PDGFC-209ENST00000513664 LTBP4Q8N2S1 1624 aa13.7□□□□□ -0.22
PDGFC-209ENST00000513664 NRXN3Q9Y4C0 1643 aa13.7□□□□□ -0.22
PDGFC-209ENST00000513664 NRXN1Q9ULB1 1477 aa13.69□□□□□ -0.22
PDGFC-209ENST00000513664 PIK3C2GO75747 1445 aa13.69□□□□□ -0.22
PDGFC-209ENST00000513664 LAMC1P11047 1609 aa13.68□□□□□ -0.22
PDGFC-209ENST00000513664 NKTRP30414 1462 aaKnown RBP13.68□□□□□ -0.22
PDGFC-209ENST00000513664 IQSEC2Q5JU85 1478 aa13.68□□□□□ -0.22
PDGFC-209ENST00000513664 ADGRF5Q8IZF2 1346 aa13.68□□□□□ -0.22
PDGFC-209ENST00000513664 NWD1Q149M9 1564 aa13.68□□□□□ -0.22
PDGFC-209ENST00000513664 NEUROD1Q13562 356 aa13.68□□□□□ -0.22
PDGFC-209ENST00000513664 ALKQ9UM73 1620 aa13.68□□□□□ -0.22
PDGFC-209ENST00000513664 CERKQ8TCT0 537 aa13.67□□□□□ -0.22
PDGFC-209ENST00000513664 SIN3AQ96ST3 1273 aa13.67□□□□□ -0.22
PDGFC-209ENST00000513664 CHD2O14647 1828 aaKnown RBP13.67□□□□□ -0.22
PDGFC-209ENST00000513664 SENP3Q9H4L4 574 aaPredicted RBP13.66□□□□□ -0.22
PDGFC-209ENST00000513664 CCER1Q8TC90 406 aaPredicted RBP13.65□□□□□ -0.22
PDGFC-209ENST00000513664 KDM2AQ9Y2K7 1162 aa13.65□□□□□ -0.22
PDGFC-209ENST00000513664 TONSLQ96HA7 1378 aa13.65□□□□□ -0.22
PDGFC-209ENST00000513664 METP08581 1390 aa13.64□□□□□ -0.23
PDGFC-209ENST00000513664 C14orf93Q9H972 538 aaKnown RBP13.64□□□□□ -0.23
PDGFC-209ENST00000513664 AMOTL2Q9Y2J4 779 aa13.64□□□□□ -0.23
PDGFC-209ENST00000513664 SETD1AO15047 1707 aaKnown RBP13.64□□□□□ -0.23
PDGFC-209ENST00000513664 STRCP1A6NGW2 1772 aa13.63□□□□□ -0.23
PDGFC-209ENST00000513664 L3MBTL2Q969R5 705 aa13.63□□□□□ -0.23
PDGFC-209ENST00000513664 TIMELESSQ9UNS1 1208 aa13.63□□□□□ -0.23
PDGFC-209ENST00000513664 LRRC7Q96NW7 1537 aa13.63□□□□□ -0.23
PDGFC-209ENST00000513664 PRAG1Q86YV5 1406 aa13.63□□□□□ -0.23
PDGFC-209ENST00000513664 NCOA3Q9Y6Q9 1424 aa13.63□□□□□ -0.23
PDGFC-209ENST00000513664 XRN1Q8IZH2 1706 aaKnown RBP13.61□□□□□ -0.23
PDGFC-209ENST00000513664 PROSER2Q86WR7 435 aaPredicted RBP13.61□□□□□ -0.23
PDGFC-209ENST00000513664 PTCH1Q13635 1447 aa13.6□□□□□ -0.23
PDGFC-209ENST00000513664 CFAP70Q5T0N1 1121 aa13.6□□□□□ -0.23
PDGFC-209ENST00000513664 PTPRUQ92729 1446 aa13.6□□□□□ -0.23
PDGFC-209ENST00000513664 KIAA1210Q9ULL0 1709 aa13.6□□□□□ -0.23
PDGFC-209ENST00000513664 LRPPRCP42704 1394 aaKnown RBP13.59□□□□□ -0.23
PDGFC-209ENST00000513664 TMEM94Q12767 1356 aa13.58□□□□□ -0.23
PDGFC-209ENST00000513664 ABCC11Q96J66 1382 aa13.58□□□□□ -0.23
PDGFC-209ENST00000513664 TECPR2O15040 1411 aa13.58□□□□□ -0.24
PDGFC-209ENST00000513664 YTHDC2Q9H6S0 1430 aaKnown RBP13.58□□□□□ -0.24
PDGFC-209ENST00000513664 KNDC1Q76NI1 1749 aa13.57□□□□□ -0.24
PDGFC-209ENST00000513664 SIRT1Q96EB6 747 aa13.57□□□□□ -0.24
PDGFC-209ENST00000513664 MSH6P52701 1360 aa13.57□□□□□ -0.24
PDGFC-209ENST00000513664 ASXL1Q8IXJ9 1541 aa13.56□□□□□ -0.24
PDGFC-209ENST00000513664 TMEM132EQ6IEE7 984 aa13.56□□□□□ -0.24
PDGFC-209ENST00000513664 ADGRB1O14514 1584 aa13.56□□□□□ -0.24
PDGFC-209ENST00000513664 FAM135BQ49AJ0 1406 aa13.56□□□□□ -0.24
PDGFC-209ENST00000513664 TOM1O60784 492 aa13.55□□□□□ -0.24
PDGFC-209ENST00000513664 C14orf37Q86TY3 774 aa13.55□□□□□ -0.24
PDGFC-209ENST00000513664 DLC1Q96QB1 1528 aa13.54□□□□□ -0.24
PDGFC-209ENST00000513664 FBXO41Q8TF61 875 aa13.54□□□□□ -0.24
PDGFC-209ENST00000513664 C19orf44Q9H6X5 657 aa13.54□□□□□ -0.24
PDGFC-209ENST00000513664 STK26Q9P289 416 aa13.54□□□□□ -0.24
PDGFC-209ENST00000513664 XIRP1Q702N8 1843 aaKnown RBP13.54□□□□□ -0.24
PDGFC-209ENST00000513664 ROBO2Q9HCK4 1378 aa13.54□□□□□ -0.24
PDGFC-209ENST00000513664 DCCP43146 1447 aa13.54□□□□□ -0.24
PDGFC-209ENST00000513664 TRPM1Q7Z4N2 1603 aa13.53□□□□□ -0.24
PDGFC-209ENST00000513664 UBAP1LF5GYI3 381 aa13.52□□□□□ -0.25
PDGFC-209ENST00000513664 CADPS2Q86UW7 1296 aa13.52□□□□□ -0.25
PDGFC-209ENST00000513664 ADGRL3Q9HAR2 1447 aa13.51□□□□□ -0.25
PDGFC-209ENST00000513664 ROCK2O75116 1388 aaKnown RBP13.51□□□□□ -0.25
PDGFC-209ENST00000513664 ATF3P18847 181 aa13.51□□□□□ -0.25
PDGFC-209ENST00000513664 RBM33Q96EV2 1170 aaKnown RBP13.5□□□□□ -0.25
PDGFC-209ENST00000513664 POGKQ9P215 609 aa13.5□□□□□ -0.25
PDGFC-209ENST00000513664 RALGAPBQ86X10 1494 aa13.49□□□□□ -0.25
PDGFC-209ENST00000513664 TRAK1Q9UPV9 953 aa13.49□□□□□ -0.25
PDGFC-209ENST00000513664 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.48□□□□□ -0.25
PDGFC-209ENST00000513664 NBPF1Q3BBV0 1214 aa13.48□□□□□ -0.25
PDGFC-209ENST00000513664 NBPF8Q3BBV2 869 aa13.48□□□□□ -0.25
PDGFC-209ENST00000513664 PRAM1Q96QH2 718 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms