RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 SLC52A1Q9NWF4 448 aa17.32■□□□□ 0.36
DDX41-216ENST00000513562 FGD6Q6ZV73 1430 aa17.31■□□□□ 0.36
DDX41-216ENST00000513562 SPATA31A6Q5VVP1 1343 aa17.31■□□□□ 0.36
DDX41-216ENST00000513562 ZFYVE9O95405 1425 aa17.3■□□□□ 0.36
DDX41-216ENST00000513562 PLEKHG1Q9ULL1 1385 aa17.3■□□□□ 0.36
DDX41-216ENST00000513562 UPF1Q92900 1129 aaKnown RBP eCLIP17.3■□□□□ 0.36
DDX41-216ENST00000513562 NCOA3Q9Y6Q9 1424 aa17.3■□□□□ 0.36
DDX41-216ENST00000513562 PTPN23Q9H3S7 1636 aa17.29■□□□□ 0.36
DDX41-216ENST00000513562 ANKRD30AQ9BXX3 1397 aa17.28■□□□□ 0.36
DDX41-216ENST00000513562 ZNF772Q68DY9 489 aaPredicted RBP17.28■□□□□ 0.36
DDX41-216ENST00000513562 BCANQ96GW7 911 aa17.28■□□□□ 0.36
DDX41-216ENST00000513562 RPRD2Q5VT52 1461 aaKnown RBP17.26■□□□□ 0.35
DDX41-216ENST00000513562 AHDC1Q5TGY3 1603 aaPredicted RBP17.25■□□□□ 0.35
DDX41-216ENST00000513562 RIMS2Q9UQ26 1411 aa17.25■□□□□ 0.35
DDX41-216ENST00000513562 MEX3CQ5U5Q3 659 aaKnown RBP17.25■□□□□ 0.35
DDX41-216ENST00000513562 TRIM52Q96A61 297 aa17.24■□□□□ 0.35
DDX41-216ENST00000513562 TBX22Q9Y458 520 aa17.24■□□□□ 0.35
DDX41-216ENST00000513562 PPP1R15AO75807 674 aaPredicted RBP17.23■□□□□ 0.35
DDX41-216ENST00000513562 CHIC2Q9UKJ5 165 aa17.23■□□□□ 0.35
DDX41-216ENST00000513562 HDGFP51858 240 aaKnown RBP17.22■□□□□ 0.35
DDX41-216ENST00000513562 CADPS2Q86UW7 1296 aa17.22■□□□□ 0.35
DDX41-216ENST00000513562 CHD2O14647 1828 aaKnown RBP17.21■□□□□ 0.35
DDX41-216ENST00000513562 SHPRHQ149N8 1683 aa17.21■□□□□ 0.35
DDX41-216ENST00000513562 ADGRL2O95490 1459 aa17.21■□□□□ 0.35
DDX41-216ENST00000513562 CDK12Q9NYV4 1490 aaPredicted RBP17.21■□□□□ 0.35
DDX41-216ENST00000513562 ADAMTS13Q76LX8 1427 aa17.21■□□□□ 0.34
DDX41-216ENST00000513562 C14orf37Q86TY3 774 aa17.2■□□□□ 0.34
DDX41-216ENST00000513562 C19orf44Q9H6X5 657 aa17.2■□□□□ 0.34
DDX41-216ENST00000513562 PIK3R4Q99570 1358 aa17.19■□□□□ 0.34
DDX41-216ENST00000513562 TMEM131LA2VDJ0 1609 aa17.19■□□□□ 0.34
DDX41-216ENST00000513562 RXRBP28702 533 aa17.19■□□□□ 0.34
DDX41-216ENST00000513562 ATF3P18847 181 aa17.18■□□□□ 0.34
DDX41-216ENST00000513562 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.18■□□□□ 0.34
DDX41-216ENST00000513562 DIP2AQ14689 1571 aa17.18■□□□□ 0.34
DDX41-216ENST00000513562 SRCAPQ6ZRS2 3230 aa17.17■□□□□ 0.34
DDX41-216ENST00000513562 ANKRD50Q9ULJ7 1429 aa17.16■□□□□ 0.34
DDX41-216ENST00000513562 BRINP3Q76B58 766 aa17.16■□□□□ 0.34
DDX41-216ENST00000513562 GCC2Q8IWJ2 1684 aa17.16■□□□□ 0.34
DDX41-216ENST00000513562 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.16■□□□□ 0.34
DDX41-216ENST00000513562 DCCP43146 1447 aa17.14■□□□□ 0.33
DDX41-216ENST00000513562 LOC105371045A0A1W2PR82 267 aa17.14■□□□□ 0.33
DDX41-216ENST00000513562 SETD5Q9C0A6 1442 aa17.13■□□□□ 0.33
DDX41-216ENST00000513562 AFF2P51816 1311 aa17.13■□□□□ 0.33
DDX41-216ENST00000513562 NUTM2BA6NNL0 878 aaPredicted RBP17.12■□□□□ 0.33
DDX41-216ENST00000513562 NUTM2EB1AL46 878 aaPredicted RBP17.12■□□□□ 0.33
DDX41-216ENST00000513562 NUTM2AQ8IVF1 878 aaPredicted RBP17.12■□□□□ 0.33
DDX41-216ENST00000513562 PTPRUQ92729 1446 aa17.12■□□□□ 0.33
DDX41-216ENST00000513562 TRPM2O94759 1503 aa17.11■□□□□ 0.33
DDX41-216ENST00000513562 ASXL1Q8IXJ9 1541 aa17.11■□□□□ 0.33
DDX41-216ENST00000513562 CHGAP10645 457 aaKnown RBP17.11■□□□□ 0.33
DDX41-216ENST00000513562 APLP2Q06481 763 aa17.11■□□□□ 0.33
DDX41-216ENST00000513562 NUTM2DQ5VT03 806 aaPredicted RBP17.11■□□□□ 0.33
DDX41-216ENST00000513562 MYO5BQ9ULV0 1848 aa17.11■□□□□ 0.33
DDX41-216ENST00000513562 AMOTL2Q9Y2J4 779 aa17.1■□□□□ 0.33
DDX41-216ENST00000513562 RGS12O14924 1447 aa17.1■□□□□ 0.33
DDX41-216ENST00000513562 MST1RQ04912 1400 aa17.08■□□□□ 0.32
DDX41-216ENST00000513562 UNC13BO14795 1591 aa17.07■□□□□ 0.32
DDX41-216ENST00000513562 RBM6P78332 1123 aaKnown RBP17.06■□□□□ 0.32
DDX41-216ENST00000513562 NHSL1Q5SYE7 1610 aa17.06■□□□□ 0.32
DDX41-216ENST00000513562 LRRC59Q96AG4 307 aaKnown RBP17.05■□□□□ 0.32
DDX41-216ENST00000513562 XRN1Q8IZH2 1706 aaKnown RBP17.04■□□□□ 0.32
DDX41-216ENST00000513562 PNPLA6Q8IY17 1366 aa17.04■□□□□ 0.32
DDX41-216ENST00000513562 C8orf37Q96NL8 207 aa17.04■□□□□ 0.32
DDX41-216ENST00000513562 QTRT2Q9H974 415 aaKnown RBP17.04■□□□□ 0.32
DDX41-216ENST00000513562 E9PCH4 1651 aa17.04■□□□□ 0.32
DDX41-216ENST00000513562 FAM50AQ14320 339 aaKnown RBP17.03■□□□□ 0.32
DDX41-216ENST00000513562 SETBP1Q9Y6X0 1596 aa17.02■□□□□ 0.32
DDX41-216ENST00000513562 NRXN3Q9Y4C0 1643 aa17.01■□□□□ 0.31
DDX41-216ENST00000513562 ADGRL3Q9HAR2 1447 aa17.01■□□□□ 0.31
DDX41-216ENST00000513562 IQGAP3Q86VI3 1631 aa17■□□□□ 0.31
DDX41-216ENST00000513562 METP08581 1390 aa17■□□□□ 0.31
DDX41-216ENST00000513562 DDX17Q92841 729 aaKnown RBP16.99■□□□□ 0.31
DDX41-216ENST00000513562 ATAD2Q6PL18 1390 aa16.99■□□□□ 0.31
DDX41-216ENST00000513562 NGLY1Q96IV0 654 aa16.98■□□□□ 0.31
DDX41-216ENST00000513562 ROCK1Q13464 1354 aa16.98■□□□□ 0.31
DDX41-216ENST00000513562 C1orf167Q5SNV9 1468 aa16.95■□□□□ 0.3
DDX41-216ENST00000513562 NUP155O75694 1391 aa16.95■□□□□ 0.3
DDX41-216ENST00000513562 ADAMTS2O95450 1211 aa16.95■□□□□ 0.3
DDX41-216ENST00000513562 LAMC1P11047 1609 aa16.93■□□□□ 0.3
DDX41-216ENST00000513562 USP21Q9UK80 565 aa16.92■□□□□ 0.3
DDX41-216ENST00000513562 TRPC5Q9UL62 973 aaPredicted RBP16.92■□□□□ 0.3
DDX41-216ENST00000513562 PTCH1Q13635 1447 aa16.92■□□□□ 0.3
DDX41-216ENST00000513562 NALCNQ8IZF0 1738 aa16.92■□□□□ 0.3
DDX41-216ENST00000513562 SOS2Q07890 1332 aaPredicted RBP16.92■□□□□ 0.3
DDX41-216ENST00000513562 FNBP4Q8N3X1 1017 aaPredicted RBP16.91■□□□□ 0.3
DDX41-216ENST00000513562 EP400Q96L91 3159 aa16.91■□□□□ 0.3
DDX41-216ENST00000513562 ATRNO75882 1429 aa16.9■□□□□ 0.3
DDX41-216ENST00000513562 FOXD1Q16676 465 aa16.9■□□□□ 0.3
DDX41-216ENST00000513562 ZNF326Q5BKZ1 582 aaKnown RBP16.9■□□□□ 0.3
DDX41-216ENST00000513562 ZRANB1Q9UGI0 708 aa16.9■□□□□ 0.3
DDX41-216ENST00000513562 NEXMIFQ5QGS0 1516 aa16.88■□□□□ 0.29
DDX41-216ENST00000513562 ORAI2Q96SN7 254 aa16.87■□□□□ 0.29
DDX41-216ENST00000513562 PRAG1Q86YV5 1406 aa16.86■□□□□ 0.29
DDX41-216ENST00000513562 MYOM2P54296 1465 aa16.86■□□□□ 0.29
DDX41-216ENST00000513562 CCDC125Q86Z20 511 aa16.85■□□□□ 0.29
DDX41-216ENST00000513562 ROBO2Q9HCK4 1378 aa16.85■□□□□ 0.29
DDX41-216ENST00000513562 COL22A1Q8NFW1 1626 aaPredicted RBP16.85■□□□□ 0.29
DDX41-216ENST00000513562 SPHKAPQ2M3C7 1700 aa16.84■□□□□ 0.29
DDX41-216ENST00000513562 BCL9LQ86UU0 1499 aa16.84■□□□□ 0.29
DDX41-216ENST00000513562 CLTCL1P53675 1640 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms