RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 ROCK2O75116 1388 aaKnown RBP14.97□□□□□ -0.01
LIMCH1-213ENST00000511496 KIF3AQ9Y496 699 aa14.97□□□□□ -0.01
LIMCH1-213ENST00000511496 SMARCA4P51532 1647 aa14.96□□□□□ -0.01
LIMCH1-213ENST00000511496 DENND4BO75064 1496 aaPredicted RBP14.96□□□□□ -0.01
LIMCH1-213ENST00000511496 MIA2Q96PC5 1412 aa14.96□□□□□ -0.01
LIMCH1-213ENST00000511496 BRD2P25440 801 aaKnown RBP14.96□□□□□ -0.01
LIMCH1-213ENST00000511496 SSFA2P28290 1259 aa14.96□□□□□ -0.01
LIMCH1-213ENST00000511496 NBPF1Q3BBV0 1214 aa14.96□□□□□ -0.01
LIMCH1-213ENST00000511496 CARD11Q9BXL7 1154 aa14.96□□□□□ -0.01
LIMCH1-213ENST00000511496 CCDC39Q9UFE4 941 aa14.96□□□□□ -0.01
LIMCH1-213ENST00000511496 ST20-MTHFSA0A0A6YYL1 179 aa14.96□□□□□ -0.01
LIMCH1-213ENST00000511496 PRIM1P49642 420 aaKnown RBP14.95□□□□□ -0.02
LIMCH1-213ENST00000511496 KIAA2012Q0VF49 1180 aa14.95□□□□□ -0.02
LIMCH1-213ENST00000511496 RAB3GAP1Q15042 981 aa14.95□□□□□ -0.02
LIMCH1-213ENST00000511496 RNF214Q8ND24 703 aa14.95□□□□□ -0.02
LIMCH1-213ENST00000511496 CHMP4CQ96CF2 233 aa14.95□□□□□ -0.02
LIMCH1-213ENST00000511496 DNAJC2Q99543 621 aaKnown RBP14.95□□□□□ -0.02
LIMCH1-213ENST00000511496 SLC4A1APQ9BWU0 796 aaKnown RBP14.95□□□□□ -0.02
LIMCH1-213ENST00000511496 MTUS2Q5JR59 1369 aa14.95□□□□□ -0.02
LIMCH1-213ENST00000511496 PTMSP20962 102 aa14.95□□□□□ -0.02
LIMCH1-213ENST00000511496 PDLIM2Q96JY6 352 aa14.94□□□□□ -0.02
LIMCH1-213ENST00000511496 BCL2L12Q9HB09 334 aa14.94□□□□□ -0.02
LIMCH1-213ENST00000511496 KIF27Q86VH2 1401 aa14.94□□□□□ -0.02
LIMCH1-213ENST00000511496 TRIM6-TRIM34B2RNG4 842 aa14.94□□□□□ -0.02
LIMCH1-213ENST00000511496 MCM5P33992 734 aa14.94□□□□□ -0.02
LIMCH1-213ENST00000511496 KLHL40Q2TBA0 621 aa14.94□□□□□ -0.02
LIMCH1-213ENST00000511496 TRIM34Q9BYJ4 488 aa14.94□□□□□ -0.02
LIMCH1-213ENST00000511496 ZSCAN23Q3MJ62 389 aa14.93□□□□□ -0.02
LIMCH1-213ENST00000511496 MCTP1Q6DN14 999 aa14.93□□□□□ -0.02
LIMCH1-213ENST00000511496 BCORL1Q5H9F3 1711 aa14.93□□□□□ -0.02
LIMCH1-213ENST00000511496 EIF3AQ14152 1382 aaKnown RBP14.93□□□□□ -0.02
LIMCH1-213ENST00000511496 HMGN5P82970 282 aaKnown RBP14.92□□□□□ -0.02
LIMCH1-213ENST00000511496 C17orf53Q8N3J3 647 aaPredicted RBP14.92□□□□□ -0.02
LIMCH1-213ENST00000511496 WDR43Q15061 677 aaKnown RBP eCLIP14.91□□□□□ -0.02
LIMCH1-213ENST00000511496 PLEKHH1Q9ULM0 1364 aa14.91□□□□□ -0.02
LIMCH1-213ENST00000511496 ERICH4A6NGS2 130 aa14.91□□□□□ -0.02
LIMCH1-213ENST00000511496 PRIMPOLQ96LW4 560 aa14.91□□□□□ -0.02
LIMCH1-213ENST00000511496 RBM27Q9P2N5 1060 aaKnown RBP14.91□□□□□ -0.02
LIMCH1-213ENST00000511496 CGNL1Q0VF96 1302 aa14.91□□□□□ -0.02
LIMCH1-213ENST00000511496 KDM2AQ9Y2K7 1162 aa14.9□□□□□ -0.02
LIMCH1-213ENST00000511496 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.9□□□□□ -0.02
LIMCH1-213ENST00000511496 CIZ1Q9ULV3 898 aaPredicted RBP14.9□□□□□ -0.02
LIMCH1-213ENST00000511496 DDIT3P35638 169 aa14.89□□□□□ -0.03
LIMCH1-213ENST00000511496 TIGD1Q96MW7 591 aa14.89□□□□□ -0.03
LIMCH1-213ENST00000511496 BAG4O95429 457 aaKnown RBP14.89□□□□□ -0.03
LIMCH1-213ENST00000511496 CHRM1P11229 460 aaPredicted RBP14.89□□□□□ -0.03
LIMCH1-213ENST00000511496 ZNF445P59923 1031 aa14.89□□□□□ -0.03
LIMCH1-213ENST00000511496 SMC5Q8IY18 1101 aa14.89□□□□□ -0.03
LIMCH1-213ENST00000511496 ANKRD30BQ9BXX2 1392 aa14.88□□□□□ -0.03
LIMCH1-213ENST00000511496 PCDHB15Q9Y5E8 787 aa14.88□□□□□ -0.03
LIMCH1-213ENST00000511496 CCDC66A2RUB6 948 aa14.88□□□□□ -0.03
LIMCH1-213ENST00000511496 SPINK5Q9NQ38 1064 aaPredicted RBP14.88□□□□□ -0.03
LIMCH1-213ENST00000511496 RPRD2Q5VT52 1461 aaKnown RBP14.88□□□□□ -0.03
LIMCH1-213ENST00000511496 CCDC146Q8IYE0 955 aa14.88□□□□□ -0.03
LIMCH1-213ENST00000511496 PMFBP1Q8TBY8 1022 aa14.88□□□□□ -0.03
LIMCH1-213ENST00000511496 CUX1P39880 1505 aa14.87□□□□□ -0.03
LIMCH1-213ENST00000511496 POLR1AO95602 1720 aaPredicted RBP14.87□□□□□ -0.03
LIMCH1-213ENST00000511496 SLFN5Q08AF3 891 aa14.87□□□□□ -0.03
LIMCH1-213ENST00000511496 FHOD3Q2V2M9 1422 aa14.87□□□□□ -0.03
LIMCH1-213ENST00000511496 NOLC1Q14978 699 aaKnown RBP eCLIP14.86□□□□□ -0.03
LIMCH1-213ENST00000511496 TEX14Q8IWB6 1497 aa14.86□□□□□ -0.03
LIMCH1-213ENST00000511496 VIRMAQ69YN4 1812 aaKnown RBP14.86□□□□□ -0.03
LIMCH1-213ENST00000511496 RBM25P49756 843 aaKnown RBP14.86□□□□□ -0.03
LIMCH1-213ENST00000511496 PCF11O94913 1555 aaKnown RBP14.86□□□□□ -0.03
LIMCH1-213ENST00000511496 SYCE3A1L190 88 aa14.85□□□□□ -0.03
LIMCH1-213ENST00000511496 TOP2BQ02880 1626 aa14.85□□□□□ -0.03
LIMCH1-213ENST00000511496 NGEFQ8N5V2 710 aa14.85□□□□□ -0.03
LIMCH1-213ENST00000511496 PARD3Q8TEW0 1356 aa14.85□□□□□ -0.03
LIMCH1-213ENST00000511496 APPP05067 770 aa14.85□□□□□ -0.03
LIMCH1-213ENST00000511496 CAPN2P17655 700 aa14.84□□□□□ -0.03
LIMCH1-213ENST00000511496 PRPF40AO75400 957 aaKnown RBP14.84□□□□□ -0.03
LIMCH1-213ENST00000511496 TNNT3P45378 269 aaPredicted RBP14.84□□□□□ -0.03
LIMCH1-213ENST00000511496 IBTKQ9P2D0 1353 aaPredicted RBP14.83□□□□□ -0.03
LIMCH1-213ENST00000511496 BLMP54132 1417 aaPredicted RBP14.83□□□□□ -0.04
LIMCH1-213ENST00000511496 CD2BP2O95400 341 aaKnown RBP14.83□□□□□ -0.04
LIMCH1-213ENST00000511496 GTF2F1P35269 517 aaKnown RBP eCLIP14.83□□□□□ -0.04
LIMCH1-213ENST00000511496 TTC12Q9H892 705 aaPredicted RBP14.83□□□□□ -0.04
LIMCH1-213ENST00000511496 OGFRQ9NZT2 677 aa14.83□□□□□ -0.04
LIMCH1-213ENST00000511496 ZMYM4Q5VZL5 1548 aa14.83□□□□□ -0.04
LIMCH1-213ENST00000511496 PDE3AQ14432 1141 aa14.82□□□□□ -0.04
LIMCH1-213ENST00000511496 SLFN14P0C7P3 912 aa14.82□□□□□ -0.04
LIMCH1-213ENST00000511496 RWDD1Q9H446 243 aaPredicted RBP14.82□□□□□ -0.04
LIMCH1-213ENST00000511496 RBM42Q9BTD8 480 aaKnown RBP14.82□□□□□ -0.04
LIMCH1-213ENST00000511496 HDAC5Q9UQL6 1122 aa14.82□□□□□ -0.04
LIMCH1-213ENST00000511496 TNNQ9UQP3 1299 aa14.82□□□□□ -0.04
LIMCH1-213ENST00000511496 VGFO15240 615 aaPredicted RBP14.81□□□□□ -0.04
LIMCH1-213ENST00000511496 GAS2L2Q8NHY3 880 aa14.81□□□□□ -0.04
LIMCH1-213ENST00000511496 FEZ1Q99689 392 aa14.81□□□□□ -0.04
LIMCH1-213ENST00000511496 RIOK3O14730 519 aaKnown RBP14.8□□□□□ -0.04
LIMCH1-213ENST00000511496 SNX21Q969T3 373 aa14.8□□□□□ -0.04
LIMCH1-213ENST00000511496 RTEL1-TNFRSF6BF6WH68 1400 aa14.8□□□□□ -0.04
LIMCH1-213ENST00000511496 GABPB1Q06547 395 aaPredicted RBP14.8□□□□□ -0.04
LIMCH1-213ENST00000511496 SLC20A2Q08357 652 aa14.8□□□□□ -0.04
LIMCH1-213ENST00000511496 CHAF1AQ13111 956 aaPredicted RBP14.8□□□□□ -0.04
LIMCH1-213ENST00000511496 BCL2L13Q9BXK5 485 aa14.8□□□□□ -0.04
LIMCH1-213ENST00000511496 PIBF1Q8WXW3 757 aa14.8□□□□□ -0.04
LIMCH1-213ENST00000511496 KDM6BO15054 1643 aa14.79□□□□□ -0.04
LIMCH1-213ENST00000511496 APAF1O14727 1248 aa14.79□□□□□ -0.04
LIMCH1-213ENST00000511496 CFAP43Q8NDM7 1665 aa14.79□□□□□ -0.04
LIMCH1-213ENST00000511496 MYCNP04198 464 aaPredicted RBP14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms