RNA–Protein interactions for RNA: ENST00000509357.5

PDLIM5-213, Transcript of PDZ and LIM domain 5, humanhuman

TSL 5

Gene PDLIM5, Length 554 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-213ENST00000509357 SLC26A8Q96RN1 970 aa13.06□□□□□ -0.32
PDLIM5-213ENST00000509357 CLTCL1P53675 1640 aa13.06□□□□□ -0.32
PDLIM5-213ENST00000509357 CPS1P31327 1500 aa13.05□□□□□ -0.32
PDLIM5-213ENST00000509357 PIP4K2BP78356 416 aa13.05□□□□□ -0.32
PDLIM5-213ENST00000509357 FOXD1Q16676 465 aa13.05□□□□□ -0.32
PDLIM5-213ENST00000509357 ADGRB3O60242 1522 aa13.04□□□□□ -0.32
PDLIM5-213ENST00000509357 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.04□□□□□ -0.32
PDLIM5-213ENST00000509357 ZNF326Q5BKZ1 582 aaKnown RBP13.03□□□□□ -0.32
PDLIM5-213ENST00000509357 NUTM2DQ5VT03 806 aaPredicted RBP13.03□□□□□ -0.32
PDLIM5-213ENST00000509357 TRPM2O94759 1503 aa13.03□□□□□ -0.32
PDLIM5-213ENST00000509357 TMEM131LA2VDJ0 1609 aa13.02□□□□□ -0.32
PDLIM5-213ENST00000509357 SLC4A1APQ9BWU0 796 aaKnown RBP13.02□□□□□ -0.33
PDLIM5-213ENST00000509357 RIMS2Q9UQ26 1411 aa13.02□□□□□ -0.33
PDLIM5-213ENST00000509357 KCNA6P17658 529 aa13□□□□□ -0.33
PDLIM5-213ENST00000509357 MPHOSPH9Q99550 1183 aa13□□□□□ -0.33
PDLIM5-213ENST00000509357 KDM5AP29375 1690 aaKnown RBP12.99□□□□□ -0.33
PDLIM5-213ENST00000509357 PROSER2Q86WR7 435 aaPredicted RBP12.99□□□□□ -0.33
PDLIM5-213ENST00000509357 HRCP23327 699 aa12.98□□□□□ -0.33
PDLIM5-213ENST00000509357 PLEKHG1Q9ULL1 1385 aa12.97□□□□□ -0.33
PDLIM5-213ENST00000509357 LRRC7Q96NW7 1537 aa12.97□□□□□ -0.33
PDLIM5-213ENST00000509357 ZFYVE9O95405 1425 aa12.96□□□□□ -0.33
PDLIM5-213ENST00000509357 RBM33Q96EV2 1170 aaKnown RBP12.96□□□□□ -0.33
PDLIM5-213ENST00000509357 PCGF6Q9BYE7 350 aa12.96□□□□□ -0.33
PDLIM5-213ENST00000509357 TBX22Q9Y458 520 aa12.95□□□□□ -0.34
PDLIM5-213ENST00000509357 KIF1BO60333 1816 aa12.95□□□□□ -0.34
PDLIM5-213ENST00000509357 DHX57Q6P158 1386 aaKnown RBP12.94□□□□□ -0.34
PDLIM5-213ENST00000509357 HSPA1LP34931 641 aa12.94□□□□□ -0.34
PDLIM5-213ENST00000509357 C14orf37Q86TY3 774 aa12.94□□□□□ -0.34
PDLIM5-213ENST00000509357 TMEM94Q12767 1356 aa12.94□□□□□ -0.34
PDLIM5-213ENST00000509357 ANKRD30BQ9BXX2 1392 aa12.94□□□□□ -0.34
PDLIM5-213ENST00000509357 IFT172Q9UG01 1749 aa12.93□□□□□ -0.34
PDLIM5-213ENST00000509357 NEXMIFQ5QGS0 1516 aa12.92□□□□□ -0.34
PDLIM5-213ENST00000509357 DISP3Q9P2K9 1392 aa12.92□□□□□ -0.34
PDLIM5-213ENST00000509357 STRCP1A6NGW2 1772 aa12.92□□□□□ -0.34
PDLIM5-213ENST00000509357 ACIN1Q9UKV3 1341 aaKnown RBP12.91□□□□□ -0.34
PDLIM5-213ENST00000509357 SPATA31E1Q6ZUB1 1445 aa12.91□□□□□ -0.34
PDLIM5-213ENST00000509357 PPLO60437 1756 aa12.91□□□□□ -0.34
PDLIM5-213ENST00000509357 NRXN3Q9Y4C0 1643 aa12.91□□□□□ -0.34
PDLIM5-213ENST00000509357 VGFO15240 615 aaPredicted RBP12.89□□□□□ -0.35
PDLIM5-213ENST00000509357 AMOTL2Q9Y2J4 779 aa12.89□□□□□ -0.35
PDLIM5-213ENST00000509357 MSH6P52701 1360 aa12.89□□□□□ -0.35
PDLIM5-213ENST00000509357 SETD1AO15047 1707 aaKnown RBP12.88□□□□□ -0.35
PDLIM5-213ENST00000509357 ADAMTS13Q76LX8 1427 aa12.88□□□□□ -0.35
PDLIM5-213ENST00000509357 NKTRP30414 1462 aaKnown RBP12.87□□□□□ -0.35
PDLIM5-213ENST00000509357 PIK3R4Q99570 1358 aa12.87□□□□□ -0.35
PDLIM5-213ENST00000509357 RGL3Q3MIN7 710 aa12.87□□□□□ -0.35
PDLIM5-213ENST00000509357 CCDC144AA2RUR9 1427 aa12.87□□□□□ -0.35
PDLIM5-213ENST00000509357 RPGRIP1LQ68CZ1 1315 aa12.87□□□□□ -0.35
PDLIM5-213ENST00000509357 ATF3P18847 181 aa12.85□□□□□ -0.35
PDLIM5-213ENST00000509357 SLAIN2Q9P270 581 aa12.84□□□□□ -0.35
PDLIM5-213ENST00000509357 DIP2AQ14689 1571 aa12.84□□□□□ -0.35
PDLIM5-213ENST00000509357 NWD1Q149M9 1564 aa12.83□□□□□ -0.36
PDLIM5-213ENST00000509357 C19orf44Q9H6X5 657 aa12.83□□□□□ -0.36
PDLIM5-213ENST00000509357 METP08581 1390 aa12.82□□□□□ -0.36
PDLIM5-213ENST00000509357 ALKQ9UM73 1620 aa12.82□□□□□ -0.36
PDLIM5-213ENST00000509357 CADPS2Q86UW7 1296 aa12.82□□□□□ -0.36
PDLIM5-213ENST00000509357 SIN3AQ96ST3 1273 aa12.82□□□□□ -0.36
PDLIM5-213ENST00000509357 FAM135BQ49AJ0 1406 aa12.81□□□□□ -0.36
PDLIM5-213ENST00000509357 SETBP1Q9Y6X0 1596 aa12.81□□□□□ -0.36
PDLIM5-213ENST00000509357 PTPRUQ92729 1446 aa12.8□□□□□ -0.36
PDLIM5-213ENST00000509357 NCOA3Q9Y6Q9 1424 aa12.8□□□□□ -0.36
PDLIM5-213ENST00000509357 ASXL1Q8IXJ9 1541 aa12.8□□□□□ -0.36
PDLIM5-213ENST00000509357 PHF23Q9BUL5 403 aaPredicted RBP12.8□□□□□ -0.36
PDLIM5-213ENST00000509357 CHD2O14647 1828 aaKnown RBP12.8□□□□□ -0.36
PDLIM5-213ENST00000509357 NRXN1Q9ULB1 1477 aa12.79□□□□□ -0.36
PDLIM5-213ENST00000509357 XIRP1Q702N8 1843 aaKnown RBP12.79□□□□□ -0.36
PDLIM5-213ENST00000509357 ADGRF5Q8IZF2 1346 aa12.78□□□□□ -0.36
PDLIM5-213ENST00000509357 STK26Q9P289 416 aa12.76□□□□□ -0.37
PDLIM5-213ENST00000509357 MYOM2P54296 1465 aa12.76□□□□□ -0.37
PDLIM5-213ENST00000509357 PIK3C2GO75747 1445 aa12.75□□□□□ -0.37
PDLIM5-213ENST00000509357 ILDR2Q71H61 639 aa12.75□□□□□ -0.37
PDLIM5-213ENST00000509357 XRN1Q8IZH2 1706 aaKnown RBP12.75□□□□□ -0.37
PDLIM5-213ENST00000509357 ROBO1Q9Y6N7 1651 aa12.73□□□□□ -0.37
PDLIM5-213ENST00000509357 TMEM132EQ6IEE7 984 aa12.73□□□□□ -0.37
PDLIM5-213ENST00000509357 KDM2AQ9Y2K7 1162 aa12.72□□□□□ -0.37
PDLIM5-213ENST00000509357 ROBO2Q9HCK4 1378 aa12.71□□□□□ -0.37
PDLIM5-213ENST00000509357 BRINP3Q76B58 766 aa12.71□□□□□ -0.37
PDLIM5-213ENST00000509357 ADGRB1O14514 1584 aa12.71□□□□□ -0.37
PDLIM5-213ENST00000509357 MED1Q15648 1581 aaPredicted RBP12.71□□□□□ -0.37
PDLIM5-213ENST00000509357 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.71□□□□□ -0.38
PDLIM5-213ENST00000509357 DCCP43146 1447 aa12.71□□□□□ -0.38
PDLIM5-213ENST00000509357 ADGRL3Q9HAR2 1447 aa12.71□□□□□ -0.38
PDLIM5-213ENST00000509357 NEUROD1Q13562 356 aa12.7□□□□□ -0.38
PDLIM5-213ENST00000509357 DCAF11Q8TEB1 546 aa12.7□□□□□ -0.38
PDLIM5-213ENST00000509357 L3MBTL2Q969R5 705 aa12.7□□□□□ -0.38
PDLIM5-213ENST00000509357 CFAP70Q5T0N1 1121 aa12.69□□□□□ -0.38
PDLIM5-213ENST00000509357 WAPLQ7Z5K2 1190 aa12.69□□□□□ -0.38
PDLIM5-213ENST00000509357 PTCH1Q13635 1447 aa12.69□□□□□ -0.38
PDLIM5-213ENST00000509357 TRPM1Q7Z4N2 1603 aa12.69□□□□□ -0.38
PDLIM5-213ENST00000509357 JCADQ9P266 1359 aa12.69□□□□□ -0.38
PDLIM5-213ENST00000509357 C14orf93Q9H972 538 aaKnown RBP12.68□□□□□ -0.38
PDLIM5-213ENST00000509357 PRAG1Q86YV5 1406 aa12.68□□□□□ -0.38
PDLIM5-213ENST00000509357 KNDC1Q76NI1 1749 aa12.68□□□□□ -0.38
PDLIM5-213ENST00000509357 LRPPRCP42704 1394 aaKnown RBP12.68□□□□□ -0.38
PDLIM5-213ENST00000509357 LAMC1P11047 1609 aa12.67□□□□□ -0.38
PDLIM5-213ENST00000509357 MEX3CQ5U5Q3 659 aaKnown RBP12.67□□□□□ -0.38
PDLIM5-213ENST00000509357 MST1RQ04912 1400 aa12.67□□□□□ -0.38
PDLIM5-213ENST00000509357 KIAA1210Q9ULL0 1709 aa12.67□□□□□ -0.38
PDLIM5-213ENST00000509357 PHLPP1O60346 1717 aa12.66□□□□□ -0.38
PDLIM5-213ENST00000509357 NBPF8Q3BBV2 869 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms