RNA–Protein interactions for RNA: ENST00000508216.5

PDLIM5-210, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2 BASIC

Gene PDLIM5, Length 1,794 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-210ENST00000508216 BANK1Q8NDB2 785 aa13.54□□□□□ -0.24
PDLIM5-210ENST00000508216 UNC13AQ9UPW8 1703 aa13.54□□□□□ -0.24
PDLIM5-210ENST00000508216 KCNJ4P48050 445 aa13.53□□□□□ -0.24
PDLIM5-210ENST00000508216 RASEFQ8IZ41 740 aa13.53□□□□□ -0.24
PDLIM5-210ENST00000508216 NCAPGQ9BPX3 1015 aa13.53□□□□□ -0.24
PDLIM5-210ENST00000508216 MSNP26038 577 aaKnown RBP13.53□□□□□ -0.24
PDLIM5-210ENST00000508216 MAP2K1Q02750 393 aaPredicted RBP13.53□□□□□ -0.24
PDLIM5-210ENST00000508216 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.53□□□□□ -0.24
PDLIM5-210ENST00000508216 BRMS1Q9HCU9 246 aa13.53□□□□□ -0.24
PDLIM5-210ENST00000508216 CALCOCO1Q9P1Z2 691 aa13.53□□□□□ -0.24
PDLIM5-210ENST00000508216 GPATCH11Q8N954 259 aa13.52□□□□□ -0.25
PDLIM5-210ENST00000508216 RBM28Q9NW13 759 aaKnown RBP13.52□□□□□ -0.25
PDLIM5-210ENST00000508216 AKNAQ7Z591 1439 aa13.52□□□□□ -0.25
PDLIM5-210ENST00000508216 ANAPC15P60006 121 aa13.51□□□□□ -0.25
PDLIM5-210ENST00000508216 NBPF10Q6P3W6 841 aaKnown RBP13.51□□□□□ -0.25
PDLIM5-210ENST00000508216 FAM212AQ96EL1 285 aa13.51□□□□□ -0.25
PDLIM5-210ENST00000508216 FEZ1Q99689 392 aa13.51□□□□□ -0.25
PDLIM5-210ENST00000508216 NCOA2Q15596 1464 aa13.51□□□□□ -0.25
PDLIM5-210ENST00000508216 SIN3AQ96ST3 1273 aa13.5□□□□□ -0.25
PDLIM5-210ENST00000508216 R3HCC1Q9Y3T6 440 aaKnown RBP13.5□□□□□ -0.25
PDLIM5-210ENST00000508216 ANTXR1Q9H6X2 564 aa13.5□□□□□ -0.25
PDLIM5-210ENST00000508216 RSF1Q96T23 1441 aaPredicted RBP13.5□□□□□ -0.25
PDLIM5-210ENST00000508216 AEBP1Q8IUX7 1158 aa13.49□□□□□ -0.25
PDLIM5-210ENST00000508216 CIZ1Q9ULV3 898 aaPredicted RBP13.49□□□□□ -0.25
PDLIM5-210ENST00000508216 KIF1CO43896 1103 aaKnown RBP13.48□□□□□ -0.25
PDLIM5-210ENST00000508216 CCDC172P0C7W6 258 aa13.48□□□□□ -0.25
PDLIM5-210ENST00000508216 UBTFP17480 764 aaKnown RBP13.48□□□□□ -0.25
PDLIM5-210ENST00000508216 CAPN2P17655 700 aa13.48□□□□□ -0.25
PDLIM5-210ENST00000508216 PKD2Q13563 968 aa13.48□□□□□ -0.25
PDLIM5-210ENST00000508216 DCAF8Q5TAQ9 597 aa13.48□□□□□ -0.25
PDLIM5-210ENST00000508216 CERS3Q8IU89 383 aa13.48□□□□□ -0.25
PDLIM5-210ENST00000508216 PRDM16Q9HAZ2 1276 aa13.48□□□□□ -0.25
PDLIM5-210ENST00000508216 NOL7Q9UMY1 257 aaKnown RBP13.48□□□□□ -0.25
PDLIM5-210ENST00000508216 KIF16BQ96L93 1317 aa13.48□□□□□ -0.25
PDLIM5-210ENST00000508216 RRBP1Q9P2E9 1410 aaKnown RBP13.48□□□□□ -0.25
PDLIM5-210ENST00000508216 MYRIPQ8NFW9 859 aa13.48□□□□□ -0.25
PDLIM5-210ENST00000508216 SMC4Q9NTJ3 1288 aa13.48□□□□□ -0.25
PDLIM5-210ENST00000508216 IRF6O14896 467 aa13.47□□□□□ -0.25
PDLIM5-210ENST00000508216 RBM25P49756 843 aaKnown RBP13.47□□□□□ -0.25
PDLIM5-210ENST00000508216 OS9Q13438 667 aaPredicted RBP13.47□□□□□ -0.25
PDLIM5-210ENST00000508216 ZKSCAN8Q15776 578 aaPredicted RBP13.47□□□□□ -0.25
PDLIM5-210ENST00000508216 OTUD6BQ8N6M0 293 aa13.47□□□□□ -0.25
PDLIM5-210ENST00000508216 SIRT1Q96EB6 747 aa13.47□□□□□ -0.25
PDLIM5-210ENST00000508216 PRIMPOLQ96LW4 560 aa13.47□□□□□ -0.25
PDLIM5-210ENST00000508216 BICRAQ9NZM4 1560 aa13.47□□□□□ -0.25
PDLIM5-210ENST00000508216 SCRIBQ14160 1630 aa13.46□□□□□ -0.25
PDLIM5-210ENST00000508216 CC2D2AQ9P2K1 1620 aa13.46□□□□□ -0.25
PDLIM5-210ENST00000508216 TRIM6-TRIM34B2RNG4 842 aa13.46□□□□□ -0.25
PDLIM5-210ENST00000508216 TRIM34Q9BYJ4 488 aa13.46□□□□□ -0.25
PDLIM5-210ENST00000508216 HMGN5P82970 282 aaKnown RBP13.45□□□□□ -0.26
PDLIM5-210ENST00000508216 FAM161AQ3B820 660 aa13.45□□□□□ -0.26
PDLIM5-210ENST00000508216 VPS8Q8N3P4 1428 aa13.45□□□□□ -0.26
PDLIM5-210ENST00000508216 MCM4P33991 863 aa13.45□□□□□ -0.26
PDLIM5-210ENST00000508216 SSR1P43307 286 aaKnown RBP13.45□□□□□ -0.26
PDLIM5-210ENST00000508216 SEMA3FQ13275 785 aa13.44□□□□□ -0.26
PDLIM5-210ENST00000508216 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.44□□□□□ -0.26
PDLIM5-210ENST00000508216 TERF2IPQ9NYB0 399 aa13.44□□□□□ -0.26
PDLIM5-210ENST00000508216 SLC4A3P48751 1232 aa13.43□□□□□ -0.26
PDLIM5-210ENST00000508216 CBX1P83916 185 aa13.43□□□□□ -0.26
PDLIM5-210ENST00000508216 CT47A1Q5JQC4 288 aaPredicted RBP13.43□□□□□ -0.26
PDLIM5-210ENST00000508216 NBPF6Q5VWK0 638 aa13.43□□□□□ -0.26
PDLIM5-210ENST00000508216 POTEHQ6S545 545 aa13.43□□□□□ -0.26
PDLIM5-210ENST00000508216 CASC1Q6TDU7 716 aa13.43□□□□□ -0.26
PDLIM5-210ENST00000508216 ZNF771Q7L3S4 317 aaPredicted RBP13.43□□□□□ -0.26
PDLIM5-210ENST00000508216 NBPF5PQ86XG9 351 aaPredicted RBP13.43□□□□□ -0.26
PDLIM5-210ENST00000508216 P3H3Q8IVL6 736 aa13.43□□□□□ -0.26
PDLIM5-210ENST00000508216 NBPF4Q96M43 638 aa13.43□□□□□ -0.26
PDLIM5-210ENST00000508216 DONSONQ9NYP3 566 aa13.43□□□□□ -0.26
PDLIM5-210ENST00000508216 LOC102724159A0A0B4J2E5 919 aa13.43□□□□□ -0.26
PDLIM5-210ENST00000508216 PWP2Q15269 919 aaKnown RBP13.43□□□□□ -0.26
PDLIM5-210ENST00000508216 TSPYL2Q9H2G4 693 aaPredicted RBP13.43□□□□□ -0.26
PDLIM5-210ENST00000508216 NOP2P46087 812 aaKnown RBP13.42□□□□□ -0.26
PDLIM5-210ENST00000508216 ATP2B3Q16720 1220 aa13.42□□□□□ -0.26
PDLIM5-210ENST00000508216 C19orf67A6NJJ6 358 aa13.41□□□□□ -0.26
PDLIM5-210ENST00000508216 DDX11L8A8MPP1 907 aa13.41□□□□□ -0.26
PDLIM5-210ENST00000508216 GOLIM4O00461 696 aa13.41□□□□□ -0.26
PDLIM5-210ENST00000508216 FEZ2Q9UHY8 353 aaPredicted RBP13.41□□□□□ -0.26
PDLIM5-210ENST00000508216 ERICH3Q5RHP9 1530 aa13.41□□□□□ -0.26
PDLIM5-210ENST00000508216 FHAD1B1AJZ9 1412 aa13.41□□□□□ -0.26
PDLIM5-210ENST00000508216 MYOM3Q5VTT5 1437 aa13.41□□□□□ -0.26
PDLIM5-210ENST00000508216 HSP90AB1P08238 724 aaKnown RBP13.4□□□□□ -0.26
PDLIM5-210ENST00000508216 CD44P16070 742 aaKnown RBP13.4□□□□□ -0.26
PDLIM5-210ENST00000508216 MNS1Q8NEH6 495 aa13.4□□□□□ -0.26
PDLIM5-210ENST00000508216 OGFRQ9NZT2 677 aa13.4□□□□□ -0.26
PDLIM5-210ENST00000508216 ABCA5Q8WWZ7 1642 aa13.4□□□□□ -0.26
PDLIM5-210ENST00000508216 KTN1Q86UP2 1357 aaKnown RBP13.4□□□□□ -0.26
PDLIM5-210ENST00000508216 KIAA1107Q9UPP5 1409 aa13.4□□□□□ -0.26
PDLIM5-210ENST00000508216 ZNF710Q8N1W2 664 aa13.4□□□□□ -0.26
PDLIM5-210ENST00000508216 EIF4G1Q04637 1599 aaKnown RBP13.39□□□□□ -0.27
PDLIM5-210ENST00000508216 TRAK2O60296 914 aa13.39□□□□□ -0.27
PDLIM5-210ENST00000508216 MED4Q9NPJ6 270 aa13.39□□□□□ -0.27
PDLIM5-210ENST00000508216 SLFN14P0C7P3 912 aa13.38□□□□□ -0.27
PDLIM5-210ENST00000508216 GUCY2CP25092 1073 aa13.38□□□□□ -0.27
PDLIM5-210ENST00000508216 C8orf34Q49A92 452 aa13.38□□□□□ -0.27
PDLIM5-210ENST00000508216 CNTLNQ9NXG0 1405 aa13.38□□□□□ -0.27
PDLIM5-210ENST00000508216 GOLGA3Q08378 1498 aa13.38□□□□□ -0.27
PDLIM5-210ENST00000508216 ECM2O94769 699 aaPredicted RBP13.37□□□□□ -0.27
PDLIM5-210ENST00000508216 ICE2Q659A1 982 aa13.37□□□□□ -0.27
PDLIM5-210ENST00000508216 CFAP44Q96MT7 982 aa13.37□□□□□ -0.27
PDLIM5-210ENST00000508216 PDLIM2Q96JY6 352 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms