RNA–Protein interactions for RNA: ENST00000498431.5

MUC1-220, Transcript of mucin 1, cell surface associated, humanhuman

TSL 1 (best)

Gene MUC1, Length 667 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MUC1-220ENST00000498431 SLC52A1Q9NWF4 448 aa25.06■■□□□ 1.6
MUC1-220ENST00000498431 ZFYVE9O95405 1425 aa25.04■■□□□ 1.6
MUC1-220ENST00000498431 ANKRD50Q9ULJ7 1429 aa25.04■■□□□ 1.6
MUC1-220ENST00000498431 FAM50AQ14320 339 aaKnown RBP25.04■■□□□ 1.6
MUC1-220ENST00000498431 RPRD2Q5VT52 1461 aaKnown RBP25.03■■□□□ 1.6
MUC1-220ENST00000498431 BCANQ96GW7 911 aa25.03■■□□□ 1.6
MUC1-220ENST00000498431 GCC2Q8IWJ2 1684 aa25.03■■□□□ 1.6
MUC1-220ENST00000498431 POTEAQ6S8J7 498 aa25.01■■□□□ 1.59
MUC1-220ENST00000498431 TMEM131LA2VDJ0 1609 aa25■■□□□ 1.59
MUC1-220ENST00000498431 CHD2O14647 1828 aaKnown RBP25■■□□□ 1.59
MUC1-220ENST00000498431 PLEKHG1Q9ULL1 1385 aa24.99■■□□□ 1.59
MUC1-220ENST00000498431 RIMS2Q9UQ26 1411 aa24.99■■□□□ 1.59
MUC1-220ENST00000498431 MSH6P52701 1360 aa24.98■■□□□ 1.59
MUC1-220ENST00000498431 PHLPP1O60346 1717 aa24.95■■□□□ 1.59
MUC1-220ENST00000498431 SLAIN2Q9P270 581 aa24.95■■□□□ 1.58
MUC1-220ENST00000498431 UNC13BO14795 1591 aa24.95■■□□□ 1.58
MUC1-220ENST00000498431 PPP1R15AO75807 674 aaPredicted RBP24.94■■□□□ 1.58
MUC1-220ENST00000498431 E9PCH4 1651 aa24.92■■□□□ 1.58
MUC1-220ENST00000498431 NUTM2DQ5VT03 806 aaPredicted RBP24.9■■□□□ 1.58
MUC1-220ENST00000498431 ADAMTS13Q76LX8 1427 aa24.89■■□□□ 1.58
MUC1-220ENST00000498431 CHGAP10645 457 aaKnown RBP24.89■■□□□ 1.58
MUC1-220ENST00000498431 TBX22Q9Y458 520 aa24.89■■□□□ 1.58
MUC1-220ENST00000498431 COL16A1Q07092 1604 aaPredicted RBP24.89■■□□□ 1.57
MUC1-220ENST00000498431 HDGFP51858 240 aaKnown RBP24.87■■□□□ 1.57
MUC1-220ENST00000498431 JCADQ9P266 1359 aa24.87■■□□□ 1.57
MUC1-220ENST00000498431 SETD1AO15047 1707 aaKnown RBP24.86■■□□□ 1.57
MUC1-220ENST00000498431 IQGAP3Q86VI3 1631 aa24.85■■□□□ 1.57
MUC1-220ENST00000498431 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.84■■□□□ 1.57
MUC1-220ENST00000498431 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.83■■□□□ 1.57
MUC1-220ENST00000498431 NCOA3Q9Y6Q9 1424 aa24.83■■□□□ 1.57
MUC1-220ENST00000498431 DIP2AQ14689 1571 aa24.82■■□□□ 1.56
MUC1-220ENST00000498431 C14orf37Q86TY3 774 aa24.81■■□□□ 1.56
MUC1-220ENST00000498431 LRP6O75581 1613 aa24.81■■□□□ 1.56
MUC1-220ENST00000498431 ROCK1Q13464 1354 aa24.8■■□□□ 1.56
MUC1-220ENST00000498431 PTPRUQ92729 1446 aa24.78■■□□□ 1.56
MUC1-220ENST00000498431 PIK3R4Q99570 1358 aa24.78■■□□□ 1.56
MUC1-220ENST00000498431 AHDC1Q5TGY3 1603 aaPredicted RBP24.77■■□□□ 1.56
MUC1-220ENST00000498431 NUP155O75694 1391 aa24.77■■□□□ 1.56
MUC1-220ENST00000498431 TRPM2O94759 1503 aa24.76■■□□□ 1.55
MUC1-220ENST00000498431 C19orf44Q9H6X5 657 aa24.76■■□□□ 1.55
MUC1-220ENST00000498431 CADPS2Q86UW7 1296 aa24.75■■□□□ 1.55
MUC1-220ENST00000498431 ATF3P18847 181 aa24.74■■□□□ 1.55
MUC1-220ENST00000498431 AMOTL2Q9Y2J4 779 aa24.74■■□□□ 1.55
MUC1-220ENST00000498431 SHPRHQ149N8 1683 aa24.73■■□□□ 1.55
MUC1-220ENST00000498431 NRXN3Q9Y4C0 1643 aa24.73■■□□□ 1.55
MUC1-220ENST00000498431 SPATA31A6Q5VVP1 1343 aa24.72■■□□□ 1.55
MUC1-220ENST00000498431 ITGAEP38570 1179 aa24.72■■□□□ 1.55
MUC1-220ENST00000498431 XRN1Q8IZH2 1706 aaKnown RBP24.7■■□□□ 1.54
MUC1-220ENST00000498431 MEX3CQ5U5Q3 659 aaKnown RBP24.69■■□□□ 1.54
MUC1-220ENST00000498431 BRINP3Q76B58 766 aa24.69■■□□□ 1.54
MUC1-220ENST00000498431 SPHKAPQ2M3C7 1700 aa24.68■■□□□ 1.54
MUC1-220ENST00000498431 SETBP1Q9Y6X0 1596 aa24.67■■□□□ 1.54
MUC1-220ENST00000498431 DCCP43146 1447 aa24.64■■□□□ 1.54
MUC1-220ENST00000498431 PPARGC1BQ86YN6 1023 aaKnown RBP24.64■■□□□ 1.54
MUC1-220ENST00000498431 ASXL1Q8IXJ9 1541 aa24.64■■□□□ 1.53
MUC1-220ENST00000498431 ZNF772Q68DY9 489 aaPredicted RBP24.63■■□□□ 1.53
MUC1-220ENST00000498431 METP08581 1390 aa24.63■■□□□ 1.53
MUC1-220ENST00000498431 MST1RQ04912 1400 aa24.62■■□□□ 1.53
MUC1-220ENST00000498431 TRIM52Q96A61 297 aa24.62■■□□□ 1.53
MUC1-220ENST00000498431 NUTM2BA6NNL0 878 aaPredicted RBP24.61■■□□□ 1.53
MUC1-220ENST00000498431 NUTM2EB1AL46 878 aaPredicted RBP24.61■■□□□ 1.53
MUC1-220ENST00000498431 ZNF326Q5BKZ1 582 aaKnown RBP24.61■■□□□ 1.53
MUC1-220ENST00000498431 NUTM2AQ8IVF1 878 aaPredicted RBP24.61■■□□□ 1.53
MUC1-220ENST00000498431 NHSL1Q5SYE7 1610 aa24.61■■□□□ 1.53
MUC1-220ENST00000498431 CLTCL1P53675 1640 aa24.59■■□□□ 1.53
MUC1-220ENST00000498431 UPF1Q92900 1129 aaKnown RBP eCLIP24.58■■□□□ 1.53
MUC1-220ENST00000498431 SETD5Q9C0A6 1442 aa24.58■■□□□ 1.53
MUC1-220ENST00000498431 NEXMIFQ5QGS0 1516 aa24.57■■□□□ 1.52
MUC1-220ENST00000498431 NALCNQ8IZF0 1738 aa24.56■■□□□ 1.52
MUC1-220ENST00000498431 DDX17Q92841 729 aaKnown RBP24.56■■□□□ 1.52
MUC1-220ENST00000498431 ADGRL3Q9HAR2 1447 aa24.55■■□□□ 1.52
MUC1-220ENST00000498431 AFF2P51816 1311 aa24.54■■□□□ 1.52
MUC1-220ENST00000498431 RXRBP28702 533 aa24.53■■□□□ 1.52
MUC1-220ENST00000498431 LRRC59Q96AG4 307 aaKnown RBP24.49■■□□□ 1.51
MUC1-220ENST00000498431 PNPLA6Q8IY17 1366 aa24.49■■□□□ 1.51
MUC1-220ENST00000498431 CDK12Q9NYV4 1490 aaPredicted RBP24.49■■□□□ 1.51
MUC1-220ENST00000498431 KIF1BO60333 1816 aa24.48■■□□□ 1.51
MUC1-220ENST00000498431 C1orf167Q5SNV9 1468 aa24.45■■□□□ 1.51
MUC1-220ENST00000498431 NAIPQ13075 1403 aa24.45■■□□□ 1.51
MUC1-220ENST00000498431 C8orf37Q96NL8 207 aa24.45■■□□□ 1.5
MUC1-220ENST00000498431 RGS12O14924 1447 aa24.43■■□□□ 1.5
MUC1-220ENST00000498431 ROBO2Q9HCK4 1378 aa24.42■■□□□ 1.5
MUC1-220ENST00000498431 PTCH1Q13635 1447 aa24.42■■□□□ 1.5
MUC1-220ENST00000498431 QTRT2Q9H974 415 aaKnown RBP24.41■■□□□ 1.5
MUC1-220ENST00000498431 LAMC1P11047 1609 aa24.41■■□□□ 1.5
MUC1-220ENST00000498431 RRBP1Q9P2E9 1410 aaKnown RBP24.41■■□□□ 1.5
MUC1-220ENST00000498431 ORAI2Q96SN7 254 aa24.39■■□□□ 1.49
MUC1-220ENST00000498431 ADAMTS2O95450 1211 aa24.38■■□□□ 1.49
MUC1-220ENST00000498431 RBM6P78332 1123 aaKnown RBP24.37■■□□□ 1.49
MUC1-220ENST00000498431 VGFO15240 615 aaPredicted RBP24.36■■□□□ 1.49
MUC1-220ENST00000498431 SOS2Q07890 1332 aaPredicted RBP24.35■■□□□ 1.49
MUC1-220ENST00000498431 PRAG1Q86YV5 1406 aa24.35■■□□□ 1.49
MUC1-220ENST00000498431 SRCAPQ6ZRS2 3230 aa24.35■■□□□ 1.49
MUC1-220ENST00000498431 PPLO60437 1756 aa24.34■■□□□ 1.49
MUC1-220ENST00000498431 NGLY1Q96IV0 654 aa24.34■■□□□ 1.49
MUC1-220ENST00000498431 HFM1A2PYH4 1435 aa24.3■■□□□ 1.48
MUC1-220ENST00000498431 RPGRIP1LQ68CZ1 1315 aa24.3■■□□□ 1.48
MUC1-220ENST00000498431 SLC4A1APQ9BWU0 796 aaKnown RBP24.29■■□□□ 1.48
MUC1-220ENST00000498431 COL22A1Q8NFW1 1626 aaPredicted RBP24.28■■□□□ 1.48
MUC1-220ENST00000498431 EP400Q96L91 3159 aa24.27■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms