RNA–Protein interactions for RNA: ENST00000496136.5

ECHDC3-205, Transcript of enoyl-CoA hydratase domain containing 3, humanhuman

TSL 1 (best)

Gene ECHDC3, Length 1,767 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3-205ENST00000496136 STAC3Q96MF2 364 aa31.31■■■□□ 2.6
ECHDC3-205ENST00000496136 TMEM2Q9UHN6 1383 aa31.3■■■□□ 2.6
ECHDC3-205ENST00000496136 NUTM2DQ5VT03 806 aaPredicted RBP31.29■■■□□ 2.6
ECHDC3-205ENST00000496136 NEXMIFQ5QGS0 1516 aa31.29■■■□□ 2.6
ECHDC3-205ENST00000496136 PPLO60437 1756 aa31.29■■■□□ 2.6
ECHDC3-205ENST00000496136 IFT172Q9UG01 1749 aa31.28■■■□□ 2.6
ECHDC3-205ENST00000496136 RIMS2Q9UQ26 1411 aa31.27■■■□□ 2.6
ECHDC3-205ENST00000496136 VGFO15240 615 aaPredicted RBP31.26■■■□□ 2.59
ECHDC3-205ENST00000496136 ZFYVE9O95405 1425 aa31.25■■■□□ 2.59
ECHDC3-205ENST00000496136 HDGFP51858 240 aaKnown RBP31.25■■■□□ 2.59
ECHDC3-205ENST00000496136 ADGRF5Q8IZF2 1346 aa31.24■■■□□ 2.59
ECHDC3-205ENST00000496136 NBPF8Q3BBV2 869 aa31.23■■■□□ 2.59
ECHDC3-205ENST00000496136 SLIT1O75093 1534 aa31.23■■■□□ 2.59
ECHDC3-205ENST00000496136 ARHGAP23Q9P227 1491 aa31.23■■■□□ 2.59
ECHDC3-205ENST00000496136 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.22■■■□□ 2.59
ECHDC3-205ENST00000496136 MYOM2P54296 1465 aa31.22■■■□□ 2.59
ECHDC3-205ENST00000496136 LTKP29376 864 aa31.21■■■□□ 2.59
ECHDC3-205ENST00000496136 TXNDC2Q86VQ3 553 aa31.2■■■□□ 2.59
ECHDC3-205ENST00000496136 EID1Q9Y6B2 187 aa31.19■■■□□ 2.58
ECHDC3-205ENST00000496136 PRAG1Q86YV5 1406 aa31.18■■■□□ 2.58
ECHDC3-205ENST00000496136 LMTK3Q96Q04 1460 aa31.18■■■□□ 2.58
ECHDC3-205ENST00000496136 NRXN1Q9ULB1 1477 aa31.17■■■□□ 2.58
ECHDC3-205ENST00000496136 ANKLE2Q86XL3 938 aa31.14■■■□□ 2.58
ECHDC3-205ENST00000496136 HSPA2P54652 639 aa31.13■■■□□ 2.57
ECHDC3-205ENST00000496136 SENP3Q9H4L4 574 aaPredicted RBP31.12■■■□□ 2.57
ECHDC3-205ENST00000496136 PIK3C2GO75747 1445 aa31.11■■■□□ 2.57
ECHDC3-205ENST00000496136 SCAF11Q99590 1463 aaKnown RBP31.1■■■□□ 2.57
ECHDC3-205ENST00000496136 CFAP70Q5T0N1 1121 aa31.07■■■□□ 2.56
ECHDC3-205ENST00000496136 C14orf93Q9H972 538 aaKnown RBP31.07■■■□□ 2.56
ECHDC3-205ENST00000496136 PLEKHG1Q9ULL1 1385 aa31.07■■■□□ 2.56
ECHDC3-205ENST00000496136 NBPF1Q3BBV0 1214 aa31.05■■■□□ 2.56
ECHDC3-205ENST00000496136 NCKAP5LQ9HCH0 1330 aa31.04■■■□□ 2.56
ECHDC3-205ENST00000496136 BCANQ96GW7 911 aa31.04■■■□□ 2.56
ECHDC3-205ENST00000496136 TRPM1Q7Z4N2 1603 aa31.03■■■□□ 2.56
ECHDC3-205ENST00000496136 RALGAPBQ86X10 1494 aa31■■■□□ 2.55
ECHDC3-205ENST00000496136 KIAA1210Q9ULL0 1709 aa31■■■□□ 2.55
ECHDC3-205ENST00000496136 SETBP1Q9Y6X0 1596 aa31■■■□□ 2.55
ECHDC3-205ENST00000496136 NRXN3Q9Y4C0 1643 aa31■■■□□ 2.55
ECHDC3-205ENST00000496136 ALKQ9UM73 1620 aa30.99■■■□□ 2.55
ECHDC3-205ENST00000496136 POLR1AO95602 1720 aaPredicted RBP30.98■■■□□ 2.55
ECHDC3-205ENST00000496136 ROCK2O75116 1388 aaKnown RBP30.98■■■□□ 2.55
ECHDC3-205ENST00000496136 MED14O60244 1454 aa30.97■■■□□ 2.55
ECHDC3-205ENST00000496136 ADAMTS13Q76LX8 1427 aa30.97■■■□□ 2.55
ECHDC3-205ENST00000496136 IQGAP1P46940 1657 aa30.96■■■□□ 2.55
ECHDC3-205ENST00000496136 SLC26A8Q96RN1 970 aa30.96■■■□□ 2.55
ECHDC3-205ENST00000496136 TMEM132EQ6IEE7 984 aa30.94■■■□□ 2.54
ECHDC3-205ENST00000496136 LAMC1P11047 1609 aa30.94■■■□□ 2.54
ECHDC3-205ENST00000496136 NPHP4O75161 1426 aaPredicted RBP30.94■■■□□ 2.54
ECHDC3-205ENST00000496136 GPRASP1Q5JY77 1395 aa30.93■■■□□ 2.54
ECHDC3-205ENST00000496136 CARD11Q9BXL7 1154 aa30.93■■■□□ 2.54
ECHDC3-205ENST00000496136 TBX22Q9Y458 520 aa30.93■■■□□ 2.54
ECHDC3-205ENST00000496136 STRCQ7RTU9 1775 aa30.92■■■□□ 2.54
ECHDC3-205ENST00000496136 SETD1AO15047 1707 aaKnown RBP30.91■■■□□ 2.54
ECHDC3-205ENST00000496136 ADGRB1O14514 1584 aa30.89■■■□□ 2.54
ECHDC3-205ENST00000496136 METP08581 1390 aa30.89■■■□□ 2.54
ECHDC3-205ENST00000496136 ASXL1Q8IXJ9 1541 aa30.86■■■□□ 2.53
ECHDC3-205ENST00000496136 DIP2AQ14689 1571 aa30.84■■■□□ 2.53
ECHDC3-205ENST00000496136 ILDR1Q86SU0 546 aaPredicted RBP30.82■■■□□ 2.52
ECHDC3-205ENST00000496136 STK26Q9P289 416 aa30.8■■■□□ 2.52
ECHDC3-205ENST00000496136 YTHDC2Q9H6S0 1430 aaKnown RBP30.8■■■□□ 2.52
ECHDC3-205ENST00000496136 TRAK1Q9UPV9 953 aa30.79■■■□□ 2.52
ECHDC3-205ENST00000496136 EIF4G2P78344 907 aaKnown RBP eCLIP30.79■■■□□ 2.52
ECHDC3-205ENST00000496136 USP47Q96K76 1375 aa30.78■■■□□ 2.52
ECHDC3-205ENST00000496136 PIK3R4Q99570 1358 aa30.77■■■□□ 2.52
ECHDC3-205ENST00000496136 LRPPRCP42704 1394 aaKnown RBP30.77■■■□□ 2.52
ECHDC3-205ENST00000496136 PTPRUQ92729 1446 aa30.76■■■□□ 2.51
ECHDC3-205ENST00000496136 ABCC11Q96J66 1382 aa30.75■■■□□ 2.51
ECHDC3-205ENST00000496136 DMRT2Q9Y5R5 561 aa30.75■■■□□ 2.51
ECHDC3-205ENST00000496136 HSPA5P11021 654 aaKnown RBP30.74■■■□□ 2.51
ECHDC3-205ENST00000496136 AMOTL2Q9Y2J4 779 aa30.74■■■□□ 2.51
ECHDC3-205ENST00000496136 HIRIP3Q9BW71 556 aaPredicted RBP30.72■■■□□ 2.51
ECHDC3-205ENST00000496136 ST20-MTHFSA0A0A6YYL1 179 aa30.71■■■□□ 2.51
ECHDC3-205ENST00000496136 CHD2O14647 1828 aaKnown RBP30.71■■■□□ 2.51
ECHDC3-205ENST00000496136 KCNA6P17658 529 aa30.68■■■□□ 2.5
ECHDC3-205ENST00000496136 TECPR2O15040 1411 aa30.68■■■□□ 2.5
ECHDC3-205ENST00000496136 EIF3AQ14152 1382 aaKnown RBP30.67■■■□□ 2.5
ECHDC3-205ENST00000496136 SIRT1Q96EB6 747 aa30.66■■■□□ 2.5
ECHDC3-205ENST00000496136 ARHGEF28Q8N1W1 1705 aaKnown RBP30.66■■■□□ 2.5
ECHDC3-205ENST00000496136 DLC1Q96QB1 1528 aa30.65■■■□□ 2.5
ECHDC3-205ENST00000496136 KNDC1Q76NI1 1749 aa30.65■■■□□ 2.5
ECHDC3-205ENST00000496136 PRAM1Q96QH2 718 aa30.64■■■□□ 2.5
ECHDC3-205ENST00000496136 XRN1Q8IZH2 1706 aaKnown RBP30.64■■■□□ 2.5
ECHDC3-205ENST00000496136 WAPLQ7Z5K2 1190 aa30.64■■■□□ 2.49
ECHDC3-205ENST00000496136 ROBO2Q9HCK4 1378 aa30.63■■■□□ 2.49
ECHDC3-205ENST00000496136 CENPJQ9HC77 1338 aaPredicted RBP30.63■■■□□ 2.49
ECHDC3-205ENST00000496136 POGKQ9P215 609 aa30.62■■■□□ 2.49
ECHDC3-205ENST00000496136 CPS1P31327 1500 aa30.61■■■□□ 2.49
ECHDC3-205ENST00000496136 FAM135BQ49AJ0 1406 aa30.61■■■□□ 2.49
ECHDC3-205ENST00000496136 SAFB2Q14151 953 aaKnown RBP eCLIP30.6■■■□□ 2.49
ECHDC3-205ENST00000496136 TESK2Q96S53 571 aa30.6■■■□□ 2.49
ECHDC3-205ENST00000496136 PLEKHH1Q9ULM0 1364 aa30.59■■■□□ 2.49
ECHDC3-205ENST00000496136 PTCH1Q13635 1447 aa30.58■■■□□ 2.49
ECHDC3-205ENST00000496136 NWD1Q149M9 1564 aa30.57■■■□□ 2.49
ECHDC3-205ENST00000496136 STRCP1A6NGW2 1772 aa30.56■■■□□ 2.48
ECHDC3-205ENST00000496136 ZNF335Q9H4Z2 1342 aaPredicted RBP30.56■■■□□ 2.48
ECHDC3-205ENST00000496136 QRICH2Q9H0J4 1663 aa30.53■■■□□ 2.48
ECHDC3-205ENST00000496136 SBNO2Q9Y2G9 1366 aa30.53■■■□□ 2.48
ECHDC3-205ENST00000496136 ZNF316A6NFI3 1004 aaPredicted RBP30.52■■■□□ 2.48
ECHDC3-205ENST00000496136 PROSER2Q86WR7 435 aaPredicted RBP30.51■■■□□ 2.47
ECHDC3-205ENST00000496136 SLC24A1O60721 1099 aa30.5■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms