RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 RPGRIP1LQ68CZ1 1315 aa24.91■■□□□ 1.58
HDAC6-235ENST00000495515 SCAF11Q99590 1463 aaKnown RBP24.91■■□□□ 1.58
HDAC6-235ENST00000495515 KIF1BO60333 1816 aa24.91■■□□□ 1.58
HDAC6-235ENST00000495515 LTKP29376 864 aa24.89■■□□□ 1.58
HDAC6-235ENST00000495515 ZFYVE9O95405 1425 aa24.88■■□□□ 1.57
HDAC6-235ENST00000495515 RGL3Q3MIN7 710 aa24.88■■□□□ 1.57
HDAC6-235ENST00000495515 SPATA31E1Q6ZUB1 1445 aa24.87■■□□□ 1.57
HDAC6-235ENST00000495515 NEURL4Q96JN8 1562 aa24.87■■□□□ 1.57
HDAC6-235ENST00000495515 MED14O60244 1454 aa24.86■■□□□ 1.57
HDAC6-235ENST00000495515 NPHP4O75161 1426 aaPredicted RBP24.86■■□□□ 1.57
HDAC6-235ENST00000495515 VGFO15240 615 aaPredicted RBP24.84■■□□□ 1.57
HDAC6-235ENST00000495515 MYO5BQ9ULV0 1848 aa24.84■■□□□ 1.57
HDAC6-235ENST00000495515 POLR1AO95602 1720 aaPredicted RBP24.83■■□□□ 1.57
HDAC6-235ENST00000495515 BCANQ96GW7 911 aa24.83■■□□□ 1.57
HDAC6-235ENST00000495515 NUTM2DQ5VT03 806 aaPredicted RBP24.82■■□□□ 1.56
HDAC6-235ENST00000495515 PLEKHG1Q9ULL1 1385 aa24.81■■□□□ 1.56
HDAC6-235ENST00000495515 CERKQ8TCT0 537 aa24.8■■□□□ 1.56
HDAC6-235ENST00000495515 NEXMIFQ5QGS0 1516 aa24.79■■□□□ 1.56
HDAC6-235ENST00000495515 SIN3AQ96ST3 1273 aa24.78■■□□□ 1.56
HDAC6-235ENST00000495515 CLSPNQ9HAW4 1339 aa24.78■■□□□ 1.56
HDAC6-235ENST00000495515 NEUROD1Q13562 356 aa24.77■■□□□ 1.56
HDAC6-235ENST00000495515 STAC3Q96MF2 364 aa24.77■■□□□ 1.56
HDAC6-235ENST00000495515 CCER1Q8TC90 406 aaPredicted RBP24.76■■□□□ 1.55
HDAC6-235ENST00000495515 IQGAP1P46940 1657 aa24.75■■□□□ 1.55
HDAC6-235ENST00000495515 DCAF11Q8TEB1 546 aa24.72■■□□□ 1.55
HDAC6-235ENST00000495515 SLC26A8Q96RN1 970 aa24.72■■□□□ 1.55
HDAC6-235ENST00000495515 TBX22Q9Y458 520 aa24.71■■□□□ 1.55
HDAC6-235ENST00000495515 SENP3Q9H4L4 574 aaPredicted RBP24.7■■□□□ 1.54
HDAC6-235ENST00000495515 PPLO60437 1756 aa24.7■■□□□ 1.54
HDAC6-235ENST00000495515 LTBP4Q8N2S1 1624 aa24.69■■□□□ 1.54
HDAC6-235ENST00000495515 MYOM2P54296 1465 aa24.69■■□□□ 1.54
HDAC6-235ENST00000495515 ADGRF5Q8IZF2 1346 aa24.68■■□□□ 1.54
HDAC6-235ENST00000495515 KDM2AQ9Y2K7 1162 aa24.68■■□□□ 1.54
HDAC6-235ENST00000495515 SETBP1Q9Y6X0 1596 aa24.67■■□□□ 1.54
HDAC6-235ENST00000495515 ADAMTS13Q76LX8 1427 aa24.66■■□□□ 1.54
HDAC6-235ENST00000495515 DIP2AQ14689 1571 aa24.66■■□□□ 1.54
HDAC6-235ENST00000495515 TONSLQ96HA7 1378 aa24.66■■□□□ 1.54
HDAC6-235ENST00000495515 IFT172Q9UG01 1749 aa24.64■■□□□ 1.54
HDAC6-235ENST00000495515 L3MBTL2Q969R5 705 aa24.64■■□□□ 1.54
HDAC6-235ENST00000495515 PIK3R4Q99570 1358 aa24.63■■□□□ 1.53
HDAC6-235ENST00000495515 ZNF335Q9H4Z2 1342 aaPredicted RBP24.62■■□□□ 1.53
HDAC6-235ENST00000495515 NRXN1Q9ULB1 1477 aa24.62■■□□□ 1.53
HDAC6-235ENST00000495515 PIK3C2GO75747 1445 aa24.61■■□□□ 1.53
HDAC6-235ENST00000495515 KCNA6P17658 529 aa24.6■■□□□ 1.53
HDAC6-235ENST00000495515 IQSEC2Q5JU85 1478 aa24.59■■□□□ 1.53
HDAC6-235ENST00000495515 NRXN3Q9Y4C0 1643 aa24.58■■□□□ 1.53
HDAC6-235ENST00000495515 C14orf93Q9H972 538 aaKnown RBP24.58■■□□□ 1.53
HDAC6-235ENST00000495515 TIMELESSQ9UNS1 1208 aa24.58■■□□□ 1.53
HDAC6-235ENST00000495515 ALKQ9UM73 1620 aa24.57■■□□□ 1.52
HDAC6-235ENST00000495515 METP08581 1390 aa24.54■■□□□ 1.52
HDAC6-235ENST00000495515 CFAP70Q5T0N1 1121 aa24.54■■□□□ 1.52
HDAC6-235ENST00000495515 CPS1P31327 1500 aa24.54■■□□□ 1.52
HDAC6-235ENST00000495515 AMOTL2Q9Y2J4 779 aa24.52■■□□□ 1.52
HDAC6-235ENST00000495515 PRAG1Q86YV5 1406 aa24.52■■□□□ 1.52
HDAC6-235ENST00000495515 LAMC1P11047 1609 aa24.5■■□□□ 1.51
HDAC6-235ENST00000495515 NKTRP30414 1462 aaKnown RBP24.49■■□□□ 1.51
HDAC6-235ENST00000495515 NWD1Q149M9 1564 aa24.49■■□□□ 1.51
HDAC6-235ENST00000495515 PROSER2Q86WR7 435 aaPredicted RBP24.48■■□□□ 1.51
HDAC6-235ENST00000495515 PTPRUQ92729 1446 aa24.47■■□□□ 1.51
HDAC6-235ENST00000495515 TMEM132EQ6IEE7 984 aa24.47■■□□□ 1.51
HDAC6-235ENST00000495515 LRPPRCP42704 1394 aaKnown RBP24.45■■□□□ 1.5
HDAC6-235ENST00000495515 CHD2O14647 1828 aaKnown RBP24.45■■□□□ 1.5
HDAC6-235ENST00000495515 SETD1AO15047 1707 aaKnown RBP24.45■■□□□ 1.5
HDAC6-235ENST00000495515 STK26Q9P289 416 aa24.43■■□□□ 1.5
HDAC6-235ENST00000495515 YTHDC2Q9H6S0 1430 aaKnown RBP24.43■■□□□ 1.5
HDAC6-235ENST00000495515 ABCC11Q96J66 1382 aa24.42■■□□□ 1.5
HDAC6-235ENST00000495515 LRRC7Q96NW7 1537 aa24.42■■□□□ 1.5
HDAC6-235ENST00000495515 STRCP1A6NGW2 1772 aa24.41■■□□□ 1.5
HDAC6-235ENST00000495515 TMEM94Q12767 1356 aa24.41■■□□□ 1.5
HDAC6-235ENST00000495515 ASXL1Q8IXJ9 1541 aa24.4■■□□□ 1.5
HDAC6-235ENST00000495515 PTCH1Q13635 1447 aa24.4■■□□□ 1.5
HDAC6-235ENST00000495515 XRN1Q8IZH2 1706 aaKnown RBP24.4■■□□□ 1.5
HDAC6-235ENST00000495515 KIAA1210Q9ULL0 1709 aa24.39■■□□□ 1.5
HDAC6-235ENST00000495515 NCOA3Q9Y6Q9 1424 aa24.39■■□□□ 1.5
HDAC6-235ENST00000495515 NBPF8Q3BBV2 869 aa24.39■■□□□ 1.49
HDAC6-235ENST00000495515 ADGRB1O14514 1584 aa24.38■■□□□ 1.49
HDAC6-235ENST00000495515 TECPR2O15040 1411 aa24.38■■□□□ 1.49
HDAC6-235ENST00000495515 C14orf37Q86TY3 774 aa24.38■■□□□ 1.49
HDAC6-235ENST00000495515 SIRT1Q96EB6 747 aa24.38■■□□□ 1.49
HDAC6-235ENST00000495515 NBPF1Q3BBV0 1214 aa24.37■■□□□ 1.49
HDAC6-235ENST00000495515 ROCK2O75116 1388 aaKnown RBP24.37■■□□□ 1.49
HDAC6-235ENST00000495515 ROBO2Q9HCK4 1378 aa24.35■■□□□ 1.49
HDAC6-235ENST00000495515 RBM33Q96EV2 1170 aaKnown RBP24.34■■□□□ 1.49
HDAC6-235ENST00000495515 TRAK1Q9UPV9 953 aa24.34■■□□□ 1.49
HDAC6-235ENST00000495515 FAM135BQ49AJ0 1406 aa24.33■■□□□ 1.49
HDAC6-235ENST00000495515 MSH6P52701 1360 aa24.32■■□□□ 1.48
HDAC6-235ENST00000495515 UBAP1LF5GYI3 381 aa24.32■■□□□ 1.48
HDAC6-235ENST00000495515 POGKQ9P215 609 aa24.32■■□□□ 1.48
HDAC6-235ENST00000495515 TRPM1Q7Z4N2 1603 aa24.32■■□□□ 1.48
HDAC6-235ENST00000495515 DLC1Q96QB1 1528 aa24.31■■□□□ 1.48
HDAC6-235ENST00000495515 C19orf44Q9H6X5 657 aa24.31■■□□□ 1.48
HDAC6-235ENST00000495515 RALGAPBQ86X10 1494 aa24.31■■□□□ 1.48
HDAC6-235ENST00000495515 KNDC1Q76NI1 1749 aa24.3■■□□□ 1.48
HDAC6-235ENST00000495515 GPRASP1Q5JY77 1395 aa24.29■■□□□ 1.48
HDAC6-235ENST00000495515 WAPLQ7Z5K2 1190 aa24.29■■□□□ 1.48
HDAC6-235ENST00000495515 PRAM1Q96QH2 718 aa24.29■■□□□ 1.48
HDAC6-235ENST00000495515 CARD11Q9BXL7 1154 aa24.29■■□□□ 1.48
HDAC6-235ENST00000495515 TOM1O60784 492 aa24.27■■□□□ 1.48
HDAC6-235ENST00000495515 ADGRL3Q9HAR2 1447 aa24.26■■□□□ 1.47
HDAC6-235ENST00000495515 ATF3P18847 181 aa24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms