RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 IQGAP3Q86VI3 1631 aa34.01■■■■□ 3.03
HDDC3-203ENST00000494993 SENP3Q9H4L4 574 aaPredicted RBP34■■■■□ 3.03
HDDC3-203ENST00000494993 ZFYVE9O95405 1425 aa33.98■■■■□ 3.03
HDDC3-203ENST00000494993 TMEM94Q12767 1356 aa33.98■■■■□ 3.03
HDDC3-203ENST00000494993 NKTRP30414 1462 aaKnown RBP33.95■■■■□ 3.03
HDDC3-203ENST00000494993 CHD2O14647 1828 aaKnown RBP33.95■■■■□ 3.02
HDDC3-203ENST00000494993 RIMS2Q9UQ26 1411 aa33.94■■■■□ 3.02
HDDC3-203ENST00000494993 BCANQ96GW7 911 aa33.92■■■■□ 3.02
HDDC3-203ENST00000494993 PLEKHG1Q9ULL1 1385 aa33.92■■■■□ 3.02
HDDC3-203ENST00000494993 PROSER2Q86WR7 435 aaPredicted RBP33.91■■■■□ 3.02
HDDC3-203ENST00000494993 FAM135BQ49AJ0 1406 aa33.89■■■■□ 3.02
HDDC3-203ENST00000494993 PHF23Q9BUL5 403 aaPredicted RBP33.88■■■■□ 3.01
HDDC3-203ENST00000494993 HDGFP51858 240 aaKnown RBP33.87■■■■□ 3.01
HDDC3-203ENST00000494993 ROBO1Q9Y6N7 1651 aa33.87■■■■□ 3.01
HDDC3-203ENST00000494993 PPP1R15AO75807 674 aaPredicted RBP33.86■■■■□ 3.01
HDDC3-203ENST00000494993 ITGAEP38570 1179 aa33.85■■■■□ 3.01
HDDC3-203ENST00000494993 RBM33Q96EV2 1170 aaKnown RBP33.85■■■■□ 3.01
HDDC3-203ENST00000494993 NUP155O75694 1391 aa33.84■■■■□ 3.01
HDDC3-203ENST00000494993 CHGAP10645 457 aaKnown RBP33.83■■■■□ 3.01
HDDC3-203ENST00000494993 PPARGC1BQ86YN6 1023 aaKnown RBP33.82■■■■□ 3
HDDC3-203ENST00000494993 ABCF1Q8NE71 845 aaKnown RBP eCLIP33.8■■■■□ 3
HDDC3-203ENST00000494993 DIP2AQ14689 1571 aa33.78■■■■□ 3
HDDC3-203ENST00000494993 MSH6P52701 1360 aa33.78■■■■□ 3
HDDC3-203ENST00000494993 SPHKAPQ2M3C7 1700 aa33.77■■■■□ 3
HDDC3-203ENST00000494993 TBX22Q9Y458 520 aa33.77■■■■□ 3
HDDC3-203ENST00000494993 ADAMTS13Q76LX8 1427 aa33.75■■■□□ 2.99
HDDC3-203ENST00000494993 NUTM2DQ5VT03 806 aaPredicted RBP33.72■■■□□ 2.99
HDDC3-203ENST00000494993 PHLPP1O60346 1717 aa33.68■■■□□ 2.98
HDDC3-203ENST00000494993 PIK3R4Q99570 1358 aa33.67■■■□□ 2.98
HDDC3-203ENST00000494993 NCOA3Q9Y6Q9 1424 aa33.67■■■□□ 2.98
HDDC3-203ENST00000494993 TRPM2O94759 1503 aa33.66■■■□□ 2.98
HDDC3-203ENST00000494993 SLAIN2Q9P270 581 aa33.66■■■□□ 2.98
HDDC3-203ENST00000494993 RRBP1Q9P2E9 1410 aaKnown RBP33.64■■■□□ 2.98
HDDC3-203ENST00000494993 SIPA1L2Q9P2F8 1722 aaPredicted RBP33.64■■■□□ 2.98
HDDC3-203ENST00000494993 NRXN3Q9Y4C0 1643 aa33.62■■■□□ 2.97
HDDC3-203ENST00000494993 RGS17Q9UGC6 210 aaPredicted RBP33.62■■■□□ 2.97
HDDC3-203ENST00000494993 SETBP1Q9Y6X0 1596 aa33.58■■■□□ 2.97
HDDC3-203ENST00000494993 CLTCL1P53675 1640 aa33.57■■■□□ 2.97
HDDC3-203ENST00000494993 C14orf37Q86TY3 774 aa33.57■■■□□ 2.96
HDDC3-203ENST00000494993 PTPRUQ92729 1446 aa33.56■■■□□ 2.96
HDDC3-203ENST00000494993 KIF1BO60333 1816 aa33.56■■■□□ 2.96
HDDC3-203ENST00000494993 NAIPQ13075 1403 aa33.55■■■□□ 2.96
HDDC3-203ENST00000494993 COL16A1Q07092 1604 aaPredicted RBP33.55■■■□□ 2.96
HDDC3-203ENST00000494993 XRN1Q8IZH2 1706 aaKnown RBP33.55■■■□□ 2.96
HDDC3-203ENST00000494993 AMOTL2Q9Y2J4 779 aa33.53■■■□□ 2.96
HDDC3-203ENST00000494993 C19orf44Q9H6X5 657 aa33.52■■■□□ 2.96
HDDC3-203ENST00000494993 ZNF326Q5BKZ1 582 aaKnown RBP33.51■■■□□ 2.95
HDDC3-203ENST00000494993 CADPS2Q86UW7 1296 aa33.51■■■□□ 2.95
HDDC3-203ENST00000494993 JCADQ9P266 1359 aa33.5■■■□□ 2.95
HDDC3-203ENST00000494993 NEXMIFQ5QGS0 1516 aa33.49■■■□□ 2.95
HDDC3-203ENST00000494993 AHDC1Q5TGY3 1603 aaPredicted RBP33.47■■■□□ 2.95
HDDC3-203ENST00000494993 ATF3P18847 181 aa33.47■■■□□ 2.95
HDDC3-203ENST00000494993 DCCP43146 1447 aa33.43■■■□□ 2.94
HDDC3-203ENST00000494993 POTEAQ6S8J7 498 aa33.42■■■□□ 2.94
HDDC3-203ENST00000494993 HFM1A2PYH4 1435 aa33.42■■■□□ 2.94
HDDC3-203ENST00000494993 METP08581 1390 aa33.41■■■□□ 2.94
HDDC3-203ENST00000494993 SHPRHQ149N8 1683 aa33.4■■■□□ 2.94
HDDC3-203ENST00000494993 TRIM52Q96A61 297 aa33.35■■■□□ 2.93
HDDC3-203ENST00000494993 SETD1AO15047 1707 aaKnown RBP33.34■■■□□ 2.93
HDDC3-203ENST00000494993 BRINP3Q76B58 766 aa33.34■■■□□ 2.93
HDDC3-203ENST00000494993 NALCNQ8IZF0 1738 aa33.33■■■□□ 2.93
HDDC3-203ENST00000494993 SPATA31A6Q5VVP1 1343 aa33.33■■■□□ 2.93
HDDC3-203ENST00000494993 LRP6O75581 1613 aa33.33■■■□□ 2.93
HDDC3-203ENST00000494993 ASXL1Q8IXJ9 1541 aa33.32■■■□□ 2.92
HDDC3-203ENST00000494993 MST1RQ04912 1400 aa33.31■■■□□ 2.92
HDDC3-203ENST00000494993 NHSL1Q5SYE7 1610 aa33.31■■■□□ 2.92
HDDC3-203ENST00000494993 PPLO60437 1756 aa33.29■■■□□ 2.92
HDDC3-203ENST00000494993 ADGRL3Q9HAR2 1447 aa33.29■■■□□ 2.92
HDDC3-203ENST00000494993 SLC4A1APQ9BWU0 796 aaKnown RBP33.27■■■□□ 2.92
HDDC3-203ENST00000494993 VGFO15240 615 aaPredicted RBP33.24■■■□□ 2.91
HDDC3-203ENST00000494993 MEX3CQ5U5Q3 659 aaKnown RBP33.22■■■□□ 2.91
HDDC3-203ENST00000494993 PTCH1Q13635 1447 aa33.21■■■□□ 2.91
HDDC3-203ENST00000494993 RPGRIP1LQ68CZ1 1315 aa33.21■■■□□ 2.91
HDDC3-203ENST00000494993 SETD5Q9C0A6 1442 aa33.19■■■□□ 2.9
HDDC3-203ENST00000494993 PRAG1Q86YV5 1406 aa33.16■■■□□ 2.9
HDDC3-203ENST00000494993 ROBO2Q9HCK4 1378 aa33.13■■■□□ 2.89
HDDC3-203ENST00000494993 ZNF772Q68DY9 489 aaPredicted RBP33.13■■■□□ 2.89
HDDC3-203ENST00000494993 C1orf167Q5SNV9 1468 aa33.12■■■□□ 2.89
HDDC3-203ENST00000494993 LAMC1P11047 1609 aa33.11■■■□□ 2.89
HDDC3-203ENST00000494993 FOXD1Q16676 465 aa33.11■■■□□ 2.89
HDDC3-203ENST00000494993 NUTM2BA6NNL0 878 aaPredicted RBP33.1■■■□□ 2.89
HDDC3-203ENST00000494993 NUTM2EB1AL46 878 aaPredicted RBP33.1■■■□□ 2.89
HDDC3-203ENST00000494993 NUTM2AQ8IVF1 878 aaPredicted RBP33.1■■■□□ 2.89
HDDC3-203ENST00000494993 LRRC59Q96AG4 307 aaKnown RBP33.1■■■□□ 2.89
HDDC3-203ENST00000494993 IFT172Q9UG01 1749 aa33.1■■■□□ 2.89
HDDC3-203ENST00000494993 DDX17Q92841 729 aaKnown RBP33.08■■■□□ 2.89
HDDC3-203ENST00000494993 CCDC144AA2RUR9 1427 aa33.07■■■□□ 2.88
HDDC3-203ENST00000494993 PNPLA6Q8IY17 1366 aa33.04■■■□□ 2.88
HDDC3-203ENST00000494993 SPATA31E1Q6ZUB1 1445 aa33.02■■■□□ 2.88
HDDC3-203ENST00000494993 MPHOSPH9Q99550 1183 aa33.01■■■□□ 2.87
HDDC3-203ENST00000494993 ADGRF5Q8IZF2 1346 aa33■■■□□ 2.87
HDDC3-203ENST00000494993 CDC42BPGQ6DT37 1551 aa32.99■■■□□ 2.87
HDDC3-203ENST00000494993 AFF2P51816 1311 aa32.99■■■□□ 2.87
HDDC3-203ENST00000494993 ORAI2Q96SN7 254 aa32.98■■■□□ 2.87
HDDC3-203ENST00000494993 ANKRD30BQ9BXX2 1392 aa32.96■■■□□ 2.87
HDDC3-203ENST00000494993 RGL3Q3MIN7 710 aa32.96■■■□□ 2.87
HDDC3-203ENST00000494993 KNDC1Q76NI1 1749 aa32.96■■■□□ 2.87
HDDC3-203ENST00000494993 RXRBP28702 533 aa32.95■■■□□ 2.87
HDDC3-203ENST00000494993 SOS2Q07890 1332 aaPredicted RBP32.94■■■□□ 2.86
HDDC3-203ENST00000494993 CDK12Q9NYV4 1490 aaPredicted RBP32.93■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms