RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 RPRD2Q5VT52 1461 aaKnown RBP22.49■■□□□ 1.19
PRPF40A-211ENST00000493468 RBM33Q96EV2 1170 aaKnown RBP22.49■■□□□ 1.19
PRPF40A-211ENST00000493468 SLC52A1Q9NWF4 448 aa22.49■■□□□ 1.19
PRPF40A-211ENST00000493468 MYO5BQ9ULV0 1848 aa22.49■■□□□ 1.19
PRPF40A-211ENST00000493468 ANKRD30AQ9BXX3 1397 aa22.49■■□□□ 1.19
PRPF40A-211ENST00000493468 ZFYVE9O95405 1425 aa22.48■■□□□ 1.19
PRPF40A-211ENST00000493468 FGD6Q6ZV73 1430 aa22.48■■□□□ 1.19
PRPF40A-211ENST00000493468 NCOA3Q9Y6Q9 1424 aa22.48■■□□□ 1.19
PRPF40A-211ENST00000493468 PLEKHG1Q9ULL1 1385 aa22.48■■□□□ 1.19
PRPF40A-211ENST00000493468 GCC2Q8IWJ2 1684 aa22.46■■□□□ 1.19
PRPF40A-211ENST00000493468 SHPRHQ149N8 1683 aa22.46■■□□□ 1.19
PRPF40A-211ENST00000493468 AHDC1Q5TGY3 1603 aaPredicted RBP22.45■■□□□ 1.18
PRPF40A-211ENST00000493468 LRP6O75581 1613 aa22.44■■□□□ 1.18
PRPF40A-211ENST00000493468 SPATA31A6Q5VVP1 1343 aa22.44■■□□□ 1.18
PRPF40A-211ENST00000493468 TMEM131LA2VDJ0 1609 aa22.43■■□□□ 1.18
PRPF40A-211ENST00000493468 ADGRL2O95490 1459 aa22.43■■□□□ 1.18
PRPF40A-211ENST00000493468 DIP2AQ14689 1571 aa22.42■■□□□ 1.18
PRPF40A-211ENST00000493468 RIMS2Q9UQ26 1411 aa22.4■■□□□ 1.18
PRPF40A-211ENST00000493468 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.4■■□□□ 1.18
PRPF40A-211ENST00000493468 BCANQ96GW7 911 aa22.4■■□□□ 1.18
PRPF40A-211ENST00000493468 ZNF772Q68DY9 489 aaPredicted RBP22.39■■□□□ 1.17
PRPF40A-211ENST00000493468 HDGFP51858 240 aaKnown RBP22.38■■□□□ 1.17
PRPF40A-211ENST00000493468 TBX22Q9Y458 520 aa22.38■■□□□ 1.17
PRPF40A-211ENST00000493468 UPF1Q92900 1129 aaKnown RBP eCLIP22.36■■□□□ 1.17
PRPF40A-211ENST00000493468 PIK3R4Q99570 1358 aa22.36■■□□□ 1.17
PRPF40A-211ENST00000493468 CHIC2Q9UKJ5 165 aa22.35■■□□□ 1.17
PRPF40A-211ENST00000493468 CDK12Q9NYV4 1490 aaPredicted RBP22.34■■□□□ 1.17
PRPF40A-211ENST00000493468 ADAMTS13Q76LX8 1427 aa22.34■■□□□ 1.17
PRPF40A-211ENST00000493468 PPP1R15AO75807 674 aaPredicted RBP22.34■■□□□ 1.17
PRPF40A-211ENST00000493468 CADPS2Q86UW7 1296 aa22.34■■□□□ 1.17
PRPF40A-211ENST00000493468 MEX3CQ5U5Q3 659 aaKnown RBP22.33■■□□□ 1.17
PRPF40A-211ENST00000493468 ANKRD50Q9ULJ7 1429 aa22.32■■□□□ 1.16
PRPF40A-211ENST00000493468 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.32■■□□□ 1.16
PRPF40A-211ENST00000493468 UNC13BO14795 1591 aa22.31■■□□□ 1.16
PRPF40A-211ENST00000493468 C19orf44Q9H6X5 657 aa22.31■■□□□ 1.16
PRPF40A-211ENST00000493468 TRPM2O94759 1503 aa22.3■■□□□ 1.16
PRPF40A-211ENST00000493468 DCCP43146 1447 aa22.29■■□□□ 1.16
PRPF40A-211ENST00000493468 E9PCH4 1651 aa22.28■■□□□ 1.16
PRPF40A-211ENST00000493468 ATF3P18847 181 aa22.28■■□□□ 1.16
PRPF40A-211ENST00000493468 APLP2Q06481 763 aa22.28■■□□□ 1.16
PRPF40A-211ENST00000493468 C14orf37Q86TY3 774 aa22.28■■□□□ 1.16
PRPF40A-211ENST00000493468 LOC105371045A0A1W2PR82 267 aa22.27■■□□□ 1.16
PRPF40A-211ENST00000493468 TRIM52Q96A61 297 aa22.27■■□□□ 1.16
PRPF40A-211ENST00000493468 RXRBP28702 533 aa22.26■■□□□ 1.15
PRPF40A-211ENST00000493468 NHSL1Q5SYE7 1610 aa22.26■■□□□ 1.15
PRPF40A-211ENST00000493468 XRN1Q8IZH2 1706 aaKnown RBP22.24■■□□□ 1.15
PRPF40A-211ENST00000493468 ASXL1Q8IXJ9 1541 aa22.24■■□□□ 1.15
PRPF40A-211ENST00000493468 SETD5Q9C0A6 1442 aa22.23■■□□□ 1.15
PRPF40A-211ENST00000493468 BRINP3Q76B58 766 aa22.23■■□□□ 1.15
PRPF40A-211ENST00000493468 IQGAP3Q86VI3 1631 aa22.22■■□□□ 1.15
PRPF40A-211ENST00000493468 PTPRUQ92729 1446 aa22.21■■□□□ 1.15
PRPF40A-211ENST00000493468 NRXN3Q9Y4C0 1643 aa22.2■■□□□ 1.14
PRPF40A-211ENST00000493468 SETBP1Q9Y6X0 1596 aa22.18■■□□□ 1.14
PRPF40A-211ENST00000493468 AFF2P51816 1311 aa22.18■■□□□ 1.14
PRPF40A-211ENST00000493468 AMOTL2Q9Y2J4 779 aa22.18■■□□□ 1.14
PRPF40A-211ENST00000493468 MST1RQ04912 1400 aa22.17■■□□□ 1.14
PRPF40A-211ENST00000493468 CHGAP10645 457 aaKnown RBP22.17■■□□□ 1.14
PRPF40A-211ENST00000493468 RGS12O14924 1447 aa22.15■■□□□ 1.14
PRPF40A-211ENST00000493468 NUTM2DQ5VT03 806 aaPredicted RBP22.15■■□□□ 1.14
PRPF40A-211ENST00000493468 NUTM2BA6NNL0 878 aaPredicted RBP22.14■■□□□ 1.13
PRPF40A-211ENST00000493468 NUTM2EB1AL46 878 aaPredicted RBP22.14■■□□□ 1.13
PRPF40A-211ENST00000493468 NUTM2AQ8IVF1 878 aaPredicted RBP22.14■■□□□ 1.13
PRPF40A-211ENST00000493468 FAM50AQ14320 339 aaKnown RBP22.12■■□□□ 1.13
PRPF40A-211ENST00000493468 LRRC59Q96AG4 307 aaKnown RBP22.12■■□□□ 1.13
PRPF40A-211ENST00000493468 LAMC1P11047 1609 aa22.11■■□□□ 1.13
PRPF40A-211ENST00000493468 ROCK1Q13464 1354 aa22.11■■□□□ 1.13
PRPF40A-211ENST00000493468 RBM6P78332 1123 aaKnown RBP22.1■■□□□ 1.13
PRPF40A-211ENST00000493468 ADGRL3Q9HAR2 1447 aa22.1■■□□□ 1.13
PRPF40A-211ENST00000493468 PNPLA6Q8IY17 1366 aa22.1■■□□□ 1.13
PRPF40A-211ENST00000493468 SPHKAPQ2M3C7 1700 aa22.09■■□□□ 1.13
PRPF40A-211ENST00000493468 NALCNQ8IZF0 1738 aa22.09■■□□□ 1.13
PRPF40A-211ENST00000493468 SRCAPQ6ZRS2 3230 aa22.07■■□□□ 1.12
PRPF40A-211ENST00000493468 C8orf37Q96NL8 207 aa22.05■■□□□ 1.12
PRPF40A-211ENST00000493468 QTRT2Q9H974 415 aaKnown RBP22.05■■□□□ 1.12
PRPF40A-211ENST00000493468 METP08581 1390 aa22.03■■□□□ 1.12
PRPF40A-211ENST00000493468 NUP155O75694 1391 aa22.02■■□□□ 1.12
PRPF40A-211ENST00000493468 ATAD2Q6PL18 1390 aa22.01■■□□□ 1.11
PRPF40A-211ENST00000493468 NGLY1Q96IV0 654 aa22.01■■□□□ 1.11
PRPF40A-211ENST00000493468 NEXMIFQ5QGS0 1516 aa22■■□□□ 1.11
PRPF40A-211ENST00000493468 C1orf167Q5SNV9 1468 aa21.99■■□□□ 1.11
PRPF40A-211ENST00000493468 COL22A1Q8NFW1 1626 aaPredicted RBP21.98■■□□□ 1.11
PRPF40A-211ENST00000493468 PTCH1Q13635 1447 aa21.97■■□□□ 1.11
PRPF40A-211ENST00000493468 DDX17Q92841 729 aaKnown RBP21.97■■□□□ 1.11
PRPF40A-211ENST00000493468 PRAG1Q86YV5 1406 aa21.96■■□□□ 1.11
PRPF40A-211ENST00000493468 SOS2Q07890 1332 aaPredicted RBP21.95■■□□□ 1.1
PRPF40A-211ENST00000493468 CLTCL1P53675 1640 aa21.95■■□□□ 1.1
PRPF40A-211ENST00000493468 EP400Q96L91 3159 aa21.94■■□□□ 1.1
PRPF40A-211ENST00000493468 KIF1BO60333 1816 aa21.94■■□□□ 1.1
PRPF40A-211ENST00000493468 ADAMTS2O95450 1211 aa21.93■■□□□ 1.1
PRPF40A-211ENST00000493468 FOXD1Q16676 465 aa21.93■■□□□ 1.1
PRPF40A-211ENST00000493468 ZNF326Q5BKZ1 582 aaKnown RBP21.93■■□□□ 1.1
PRPF40A-211ENST00000493468 ATRNO75882 1429 aa21.92■■□□□ 1.1
PRPF40A-211ENST00000493468 TRPC5Q9UL62 973 aaPredicted RBP21.92■■□□□ 1.1
PRPF40A-211ENST00000493468 MARF1Q9Y4F3 1742 aaKnown RBP21.92■■□□□ 1.1
PRPF40A-211ENST00000493468 FNBP4Q8N3X1 1017 aaPredicted RBP21.91■■□□□ 1.1
PRPF40A-211ENST00000493468 USP21Q9UK80 565 aa21.91■■□□□ 1.1
PRPF40A-211ENST00000493468 MYOM2P54296 1465 aa21.88■■□□□ 1.09
PRPF40A-211ENST00000493468 ZRANB1Q9UGI0 708 aa21.87■■□□□ 1.09
PRPF40A-211ENST00000493468 ROBO2Q9HCK4 1378 aa21.86■■□□□ 1.09
PRPF40A-211ENST00000493468 CCDC125Q86Z20 511 aa21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms