RNA–Protein interactions for RNA: ENST00000493177.1

MSH6-208, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 813 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-208ENST00000493177 UBAP1LF5GYI3 381 aa19.78■□□□□ 0.76
MSH6-208ENST00000493177 PPP1R15AO75807 674 aaPredicted RBP19.78■□□□□ 0.76
MSH6-208ENST00000493177 TMEM131LA2VDJ0 1609 aa19.77■□□□□ 0.76
MSH6-208ENST00000493177 STRCP1A6NGW2 1772 aa19.76■□□□□ 0.75
MSH6-208ENST00000493177 HDGFP51858 240 aaKnown RBP19.76■□□□□ 0.75
MSH6-208ENST00000493177 SCAF1Q9H7N4 1312 aaKnown RBP19.75■□□□□ 0.75
MSH6-208ENST00000493177 SENP3Q9H4L4 574 aaPredicted RBP19.74■□□□□ 0.75
MSH6-208ENST00000493177 RIMS2Q9UQ26 1411 aa19.73■□□□□ 0.75
MSH6-208ENST00000493177 SLC4A1APQ9BWU0 796 aaKnown RBP19.71■□□□□ 0.75
MSH6-208ENST00000493177 KIF1BO60333 1816 aa19.71■□□□□ 0.75
MSH6-208ENST00000493177 TOM1O60784 492 aa19.7■□□□□ 0.74
MSH6-208ENST00000493177 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.7■□□□□ 0.74
MSH6-208ENST00000493177 SLC26A8Q96RN1 970 aa19.7■□□□□ 0.74
MSH6-208ENST00000493177 MPHOSPH9Q99550 1183 aa19.69■□□□□ 0.74
MSH6-208ENST00000493177 PIP4K2BP78356 416 aa19.68■□□□□ 0.74
MSH6-208ENST00000493177 ZNF326Q5BKZ1 582 aaKnown RBP19.68■□□□□ 0.74
MSH6-208ENST00000493177 ZFYVE9O95405 1425 aa19.68■□□□□ 0.74
MSH6-208ENST00000493177 LRRC7Q96NW7 1537 aa19.67■□□□□ 0.74
MSH6-208ENST00000493177 NUTM2DQ5VT03 806 aaPredicted RBP19.67■□□□□ 0.74
MSH6-208ENST00000493177 CCER1Q8TC90 406 aaPredicted RBP19.67■□□□□ 0.74
MSH6-208ENST00000493177 DHX57Q6P158 1386 aaKnown RBP19.67■□□□□ 0.74
MSH6-208ENST00000493177 PLEKHG1Q9ULL1 1385 aa19.66■□□□□ 0.74
MSH6-208ENST00000493177 TRPM2O94759 1503 aa19.66■□□□□ 0.74
MSH6-208ENST00000493177 CLTCL1P53675 1640 aa19.65■□□□□ 0.74
MSH6-208ENST00000493177 XIRP1Q702N8 1843 aaKnown RBP19.63■□□□□ 0.73
MSH6-208ENST00000493177 CHD2O14647 1828 aaKnown RBP19.61■□□□□ 0.73
MSH6-208ENST00000493177 KCNA6P17658 529 aa19.61■□□□□ 0.73
MSH6-208ENST00000493177 FOXD1Q16676 465 aa19.61■□□□□ 0.73
MSH6-208ENST00000493177 PROSER2Q86WR7 435 aaPredicted RBP19.6■□□□□ 0.73
MSH6-208ENST00000493177 DIP2AQ14689 1571 aa19.6■□□□□ 0.73
MSH6-208ENST00000493177 NWD1Q149M9 1564 aa19.6■□□□□ 0.73
MSH6-208ENST00000493177 NKTRP30414 1462 aaKnown RBP19.58■□□□□ 0.72
MSH6-208ENST00000493177 TMEM94Q12767 1356 aa19.56■□□□□ 0.72
MSH6-208ENST00000493177 TBX22Q9Y458 520 aa19.55■□□□□ 0.72
MSH6-208ENST00000493177 NEXMIFQ5QGS0 1516 aa19.53■□□□□ 0.72
MSH6-208ENST00000493177 C14orf37Q86TY3 774 aa19.53■□□□□ 0.72
MSH6-208ENST00000493177 RBM33Q96EV2 1170 aaKnown RBP19.53■□□□□ 0.72
MSH6-208ENST00000493177 ADAMTS13Q76LX8 1427 aa19.52■□□□□ 0.72
MSH6-208ENST00000493177 CCDC144AA2RUR9 1427 aa19.51■□□□□ 0.71
MSH6-208ENST00000493177 ALKQ9UM73 1620 aa19.51■□□□□ 0.71
MSH6-208ENST00000493177 MSH6P52701 1360 aa19.51■□□□□ 0.71
MSH6-208ENST00000493177 SETBP1Q9Y6X0 1596 aa19.5■□□□□ 0.71
MSH6-208ENST00000493177 HSPA1LP34931 641 aa19.5■□□□□ 0.71
MSH6-208ENST00000493177 NRXN3Q9Y4C0 1643 aa19.5■□□□□ 0.71
MSH6-208ENST00000493177 PPLO60437 1756 aa19.49■□□□□ 0.71
MSH6-208ENST00000493177 PIK3R4Q99570 1358 aa19.49■□□□□ 0.71
MSH6-208ENST00000493177 DISP3Q9P2K9 1392 aa19.49■□□□□ 0.71
MSH6-208ENST00000493177 ANKRD30BQ9BXX2 1392 aa19.48■□□□□ 0.71
MSH6-208ENST00000493177 CLSPNQ9HAW4 1339 aa19.48■□□□□ 0.71
MSH6-208ENST00000493177 NEUROD1Q13562 356 aa19.47■□□□□ 0.71
MSH6-208ENST00000493177 VGFO15240 615 aaPredicted RBP19.46■□□□□ 0.71
MSH6-208ENST00000493177 SIN3AQ96ST3 1273 aa19.46■□□□□ 0.71
MSH6-208ENST00000493177 AMOTL2Q9Y2J4 779 aa19.45■□□□□ 0.7
MSH6-208ENST00000493177 RPGRIP1LQ68CZ1 1315 aa19.45■□□□□ 0.7
MSH6-208ENST00000493177 ROBO1Q9Y6N7 1651 aa19.43■□□□□ 0.7
MSH6-208ENST00000493177 RGL3Q3MIN7 710 aa19.43■□□□□ 0.7
MSH6-208ENST00000493177 XRN1Q8IZH2 1706 aaKnown RBP19.42■□□□□ 0.7
MSH6-208ENST00000493177 PTPRUQ92729 1446 aa19.42■□□□□ 0.7
MSH6-208ENST00000493177 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.41■□□□□ 0.7
MSH6-208ENST00000493177 IFT172Q9UG01 1749 aa19.4■□□□□ 0.7
MSH6-208ENST00000493177 NCOA3Q9Y6Q9 1424 aa19.4■□□□□ 0.7
MSH6-208ENST00000493177 ATF3P18847 181 aa19.39■□□□□ 0.69
MSH6-208ENST00000493177 METP08581 1390 aa19.39■□□□□ 0.69
MSH6-208ENST00000493177 SETD1AO15047 1707 aaKnown RBP19.38■□□□□ 0.69
MSH6-208ENST00000493177 FAM135BQ49AJ0 1406 aa19.37■□□□□ 0.69
MSH6-208ENST00000493177 CADPS2Q86UW7 1296 aa19.36■□□□□ 0.69
MSH6-208ENST00000493177 C19orf44Q9H6X5 657 aa19.36■□□□□ 0.69
MSH6-208ENST00000493177 SLAIN2Q9P270 581 aa19.36■□□□□ 0.69
MSH6-208ENST00000493177 PHLPP1O60346 1717 aa19.36■□□□□ 0.69
MSH6-208ENST00000493177 MED1Q15648 1581 aaPredicted RBP19.36■□□□□ 0.69
MSH6-208ENST00000493177 SPATA31E1Q6ZUB1 1445 aa19.34■□□□□ 0.69
MSH6-208ENST00000493177 TONSLQ96HA7 1378 aa19.33■□□□□ 0.69
MSH6-208ENST00000493177 NALCNQ8IZF0 1738 aa19.32■□□□□ 0.68
MSH6-208ENST00000493177 PHF23Q9BUL5 403 aaPredicted RBP19.32■□□□□ 0.68
MSH6-208ENST00000493177 ADGRF5Q8IZF2 1346 aa19.3■□□□□ 0.68
MSH6-208ENST00000493177 DCCP43146 1447 aa19.29■□□□□ 0.68
MSH6-208ENST00000493177 PTCH1Q13635 1447 aa19.28■□□□□ 0.68
MSH6-208ENST00000493177 ADGRL3Q9HAR2 1447 aa19.28■□□□□ 0.68
MSH6-208ENST00000493177 ZEB1P37275 1124 aaPredicted RBP19.27■□□□□ 0.68
MSH6-208ENST00000493177 LAMC1P11047 1609 aa19.26■□□□□ 0.67
MSH6-208ENST00000493177 L3MBTL2Q969R5 705 aa19.25■□□□□ 0.67
MSH6-208ENST00000493177 STK26Q9P289 416 aa19.25■□□□□ 0.67
MSH6-208ENST00000493177 PIK3C2GO75747 1445 aa19.25■□□□□ 0.67
MSH6-208ENST00000493177 TIMELESSQ9UNS1 1208 aa19.24■□□□□ 0.67
MSH6-208ENST00000493177 KNDC1Q76NI1 1749 aa19.24■□□□□ 0.67
MSH6-208ENST00000493177 MYOM2P54296 1465 aa19.23■□□□□ 0.67
MSH6-208ENST00000493177 ROBO2Q9HCK4 1378 aa19.23■□□□□ 0.67
MSH6-208ENST00000493177 DCAF11Q8TEB1 546 aa19.22■□□□□ 0.67
MSH6-208ENST00000493177 KDM2AQ9Y2K7 1162 aa19.22■□□□□ 0.67
MSH6-208ENST00000493177 COL16A1Q07092 1604 aaPredicted RBP19.22■□□□□ 0.67
MSH6-208ENST00000493177 MST1RQ04912 1400 aa19.21■□□□□ 0.67
MSH6-208ENST00000493177 TMEM132EQ6IEE7 984 aa19.21■□□□□ 0.67
MSH6-208ENST00000493177 ILDR2Q71H61 639 aa19.21■□□□□ 0.67
MSH6-208ENST00000493177 AHDC1Q5TGY3 1603 aaPredicted RBP19.21■□□□□ 0.67
MSH6-208ENST00000493177 ASXL1Q8IXJ9 1541 aa19.2■□□□□ 0.66
MSH6-208ENST00000493177 BRINP3Q76B58 766 aa19.2■□□□□ 0.66
MSH6-208ENST00000493177 PRAG1Q86YV5 1406 aa19.19■□□□□ 0.66
MSH6-208ENST00000493177 LRPPRCP42704 1394 aaKnown RBP19.19■□□□□ 0.66
MSH6-208ENST00000493177 JCADQ9P266 1359 aa19.19■□□□□ 0.66
MSH6-208ENST00000493177 NHSL1Q5SYE7 1610 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms