RNA–Protein interactions for RNA: ENST00000493075.1

LRTM1-202, Transcript of leucine rich repeats and transmembrane domains 1, humanhuman

TSL 1 (best) BASIC

Gene LRTM1, Length 1,318 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRTM1-202ENST00000493075 PIP4K2BP78356 416 aa17.34■□□□□ 0.37
LRTM1-202ENST00000493075 RIMS2Q9UQ26 1411 aa17.34■□□□□ 0.37
LRTM1-202ENST00000493075 PLEKHG1Q9ULL1 1385 aa17.34■□□□□ 0.37
LRTM1-202ENST00000493075 PPP1R15AO75807 674 aaPredicted RBP17.33■□□□□ 0.36
LRTM1-202ENST00000493075 BCANQ96GW7 911 aa17.33■□□□□ 0.36
LRTM1-202ENST00000493075 E9PCH4 1651 aa17.33■□□□□ 0.36
LRTM1-202ENST00000493075 HFM1A2PYH4 1435 aa17.32■□□□□ 0.36
LRTM1-202ENST00000493075 TBX22Q9Y458 520 aa17.32■□□□□ 0.36
LRTM1-202ENST00000493075 TMEM131LA2VDJ0 1609 aa17.32■□□□□ 0.36
LRTM1-202ENST00000493075 SCAF1Q9H7N4 1312 aaKnown RBP17.31■□□□□ 0.36
LRTM1-202ENST00000493075 STRCP1A6NGW2 1772 aa17.29■□□□□ 0.36
LRTM1-202ENST00000493075 HSPA1LP34931 641 aa17.29■□□□□ 0.36
LRTM1-202ENST00000493075 PROSER2Q86WR7 435 aaPredicted RBP17.28■□□□□ 0.36
LRTM1-202ENST00000493075 TRIM52Q96A61 297 aa17.28■□□□□ 0.36
LRTM1-202ENST00000493075 TMEM94Q12767 1356 aa17.27■□□□□ 0.35
LRTM1-202ENST00000493075 ALKQ9UM73 1620 aa17.26■□□□□ 0.35
LRTM1-202ENST00000493075 DISP3Q9P2K9 1392 aa17.26■□□□□ 0.35
LRTM1-202ENST00000493075 NUTM2DQ5VT03 806 aaPredicted RBP17.24■□□□□ 0.35
LRTM1-202ENST00000493075 SLC4A1APQ9BWU0 796 aaKnown RBP17.24■□□□□ 0.35
LRTM1-202ENST00000493075 PIK3R4Q99570 1358 aa17.24■□□□□ 0.35
LRTM1-202ENST00000493075 NKTRP30414 1462 aaKnown RBP17.23■□□□□ 0.35
LRTM1-202ENST00000493075 ADAMTS13Q76LX8 1427 aa17.23■□□□□ 0.35
LRTM1-202ENST00000493075 ACIN1Q9UKV3 1341 aaKnown RBP17.22■□□□□ 0.35
LRTM1-202ENST00000493075 ZNF326Q5BKZ1 582 aaKnown RBP17.21■□□□□ 0.35
LRTM1-202ENST00000493075 NCOA3Q9Y6Q9 1424 aa17.21■□□□□ 0.35
LRTM1-202ENST00000493075 NWD1Q149M9 1564 aa17.21■□□□□ 0.35
LRTM1-202ENST00000493075 FAM135BQ49AJ0 1406 aa17.2■□□□□ 0.34
LRTM1-202ENST00000493075 TRPM2O94759 1503 aa17.19■□□□□ 0.34
LRTM1-202ENST00000493075 RBM33Q96EV2 1170 aaKnown RBP17.19■□□□□ 0.34
LRTM1-202ENST00000493075 MSH6P52701 1360 aa17.18■□□□□ 0.34
LRTM1-202ENST00000493075 DIP2AQ14689 1571 aa17.18■□□□□ 0.34
LRTM1-202ENST00000493075 SPHKAPQ2M3C7 1700 aa17.18■□□□□ 0.34
LRTM1-202ENST00000493075 MYO5BQ9ULV0 1848 aa17.18■□□□□ 0.34
LRTM1-202ENST00000493075 RPGRIP1LQ68CZ1 1315 aa17.17■□□□□ 0.34
LRTM1-202ENST00000493075 AMOTL2Q9Y2J4 779 aa17.17■□□□□ 0.34
LRTM1-202ENST00000493075 VGFO15240 615 aaPredicted RBP17.16■□□□□ 0.34
LRTM1-202ENST00000493075 MPHOSPH9Q99550 1183 aa17.15■□□□□ 0.34
LRTM1-202ENST00000493075 SLAIN2Q9P270 581 aa17.15■□□□□ 0.34
LRTM1-202ENST00000493075 ILDR2Q71H61 639 aa17.14■□□□□ 0.33
LRTM1-202ENST00000493075 C19orf44Q9H6X5 657 aa17.14■□□□□ 0.33
LRTM1-202ENST00000493075 XIRP1Q702N8 1843 aaKnown RBP17.14■□□□□ 0.33
LRTM1-202ENST00000493075 CLTCL1P53675 1640 aa17.13■□□□□ 0.33
LRTM1-202ENST00000493075 CHD2O14647 1828 aaKnown RBP17.13■□□□□ 0.33
LRTM1-202ENST00000493075 SETBP1Q9Y6X0 1596 aa17.12■□□□□ 0.33
LRTM1-202ENST00000493075 PTPRUQ92729 1446 aa17.12■□□□□ 0.33
LRTM1-202ENST00000493075 SETD5Q9C0A6 1442 aa17.12■□□□□ 0.33
LRTM1-202ENST00000493075 CADPS2Q86UW7 1296 aa17.11■□□□□ 0.33
LRTM1-202ENST00000493075 C14orf37Q86TY3 774 aa17.1■□□□□ 0.33
LRTM1-202ENST00000493075 METP08581 1390 aa17.1■□□□□ 0.33
LRTM1-202ENST00000493075 NEXMIFQ5QGS0 1516 aa17.1■□□□□ 0.33
LRTM1-202ENST00000493075 ATF3P18847 181 aa17.08■□□□□ 0.32
LRTM1-202ENST00000493075 CCDC144AA2RUR9 1427 aa17.06■□□□□ 0.32
LRTM1-202ENST00000493075 NRXN3Q9Y4C0 1643 aa17.06■□□□□ 0.32
LRTM1-202ENST00000493075 SOCS7O14512 581 aa17.04■□□□□ 0.32
LRTM1-202ENST00000493075 HRCP23327 699 aa17.04■□□□□ 0.32
LRTM1-202ENST00000493075 MED1Q15648 1581 aaPredicted RBP17.04■□□□□ 0.32
LRTM1-202ENST00000493075 KIF1BO60333 1816 aa17.04■□□□□ 0.32
LRTM1-202ENST00000493075 DCCP43146 1447 aa17.03■□□□□ 0.32
LRTM1-202ENST00000493075 SPATA31E1Q6ZUB1 1445 aa17.02■□□□□ 0.32
LRTM1-202ENST00000493075 RAB3GAP2Q9H2M9 1393 aa17.02■□□□□ 0.31
LRTM1-202ENST00000493075 RGL3Q3MIN7 710 aa17.01■□□□□ 0.31
LRTM1-202ENST00000493075 ROBO1Q9Y6N7 1651 aa17.01■□□□□ 0.31
LRTM1-202ENST00000493075 ANKRD30BQ9BXX2 1392 aa17.01■□□□□ 0.31
LRTM1-202ENST00000493075 XRN1Q8IZH2 1706 aaKnown RBP17■□□□□ 0.31
LRTM1-202ENST00000493075 ADGRF5Q8IZF2 1346 aa16.99■□□□□ 0.31
LRTM1-202ENST00000493075 PRAG1Q86YV5 1406 aa16.99■□□□□ 0.31
LRTM1-202ENST00000493075 BRINP3Q76B58 766 aa16.97■□□□□ 0.31
LRTM1-202ENST00000493075 JCADQ9P266 1359 aa16.97■□□□□ 0.31
LRTM1-202ENST00000493075 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.97■□□□□ 0.31
LRTM1-202ENST00000493075 PTCH1Q13635 1447 aa16.97■□□□□ 0.31
LRTM1-202ENST00000493075 ADGRL3Q9HAR2 1447 aa16.96■□□□□ 0.31
LRTM1-202ENST00000493075 ROBO2Q9HCK4 1378 aa16.95■□□□□ 0.3
LRTM1-202ENST00000493075 MST1RQ04912 1400 aa16.94■□□□□ 0.3
LRTM1-202ENST00000493075 RGS17Q9UGC6 210 aaPredicted RBP16.93■□□□□ 0.3
LRTM1-202ENST00000493075 PPLO60437 1756 aa16.92■□□□□ 0.3
LRTM1-202ENST00000493075 C14orf93Q9H972 538 aaKnown RBP16.92■□□□□ 0.3
LRTM1-202ENST00000493075 ABCC11Q96J66 1382 aa16.91■□□□□ 0.3
LRTM1-202ENST00000493075 SPATA31A6Q5VVP1 1343 aa16.91■□□□□ 0.3
LRTM1-202ENST00000493075 AHDC1Q5TGY3 1603 aaPredicted RBP16.9■□□□□ 0.3
LRTM1-202ENST00000493075 PIK3C2GO75747 1445 aa16.9■□□□□ 0.3
LRTM1-202ENST00000493075 LRPPRCP42704 1394 aaKnown RBP16.9■□□□□ 0.3
LRTM1-202ENST00000493075 SETD1AO15047 1707 aaKnown RBP16.9■□□□□ 0.3
LRTM1-202ENST00000493075 SIRT1Q96EB6 747 aa16.9■□□□□ 0.3
LRTM1-202ENST00000493075 PHLPP1O60346 1717 aa16.89■□□□□ 0.29
LRTM1-202ENST00000493075 STAC3Q96MF2 364 aa16.89■□□□□ 0.29
LRTM1-202ENST00000493075 TECPR2O15040 1411 aa16.88■□□□□ 0.29
LRTM1-202ENST00000493075 COL16A1Q07092 1604 aaPredicted RBP16.88■□□□□ 0.29
LRTM1-202ENST00000493075 TMEM132EQ6IEE7 984 aa16.88■□□□□ 0.29
LRTM1-202ENST00000493075 LRRC59Q96AG4 307 aaKnown RBP16.88■□□□□ 0.29
LRTM1-202ENST00000493075 STK26Q9P289 416 aa16.88■□□□□ 0.29
LRTM1-202ENST00000493075 C1orf167Q5SNV9 1468 aa16.88■□□□□ 0.29
LRTM1-202ENST00000493075 ASXL1Q8IXJ9 1541 aa16.87■□□□□ 0.29
LRTM1-202ENST00000493075 NRXN1Q9ULB1 1477 aa16.87■□□□□ 0.29
LRTM1-202ENST00000493075 MYOM2P54296 1465 aa16.85■□□□□ 0.29
LRTM1-202ENST00000493075 CFAP70Q5T0N1 1121 aa16.85■□□□□ 0.29
LRTM1-202ENST00000493075 WAPLQ7Z5K2 1190 aa16.85■□□□□ 0.29
LRTM1-202ENST00000493075 YTHDC2Q9H6S0 1430 aaKnown RBP16.84■□□□□ 0.29
LRTM1-202ENST00000493075 ORAI2Q96SN7 254 aa16.84■□□□□ 0.29
LRTM1-202ENST00000493075 DHX57Q6P158 1386 aaKnown RBP16.84■□□□□ 0.29
LRTM1-202ENST00000493075 POTEAQ6S8J7 498 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms