RNA–Protein interactions for RNA: ENST00000492973.1

TPR-208, Transcript of translocated promoter region, nuclear basket protein, humanhuman

TSL 2

Gene TPR, Length 453 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPR-208ENST00000492973 METTL3Q86U44 580 aaKnown RBP12.08□□□□□ -0.48
TPR-208ENST00000492973 RBM46Q8TBY0 533 aaKnown RBP12.08□□□□□ -0.48
TPR-208ENST00000492973 PXYLP1Q8TE99 480 aa12.08□□□□□ -0.48
TPR-208ENST00000492973 STAC3Q96MF2 364 aa12.08□□□□□ -0.48
TPR-208ENST00000492973 CCDC102AQ96A19 550 aa12.07□□□□□ -0.48
TPR-208ENST00000492973 NESP48681 1621 aa12.07□□□□□ -0.48
TPR-208ENST00000492973 CADPSQ9ULU8 1353 aa12.06□□□□□ -0.48
TPR-208ENST00000492973 MYT1LQ9UL68 1186 aa12.06□□□□□ -0.48
TPR-208ENST00000492973 TPRNQ4KMQ1 711 aa12.05□□□□□ -0.48
TPR-208ENST00000492973 KRI1Q8N9T8 703 aaKnown RBP12.05□□□□□ -0.48
TPR-208ENST00000492973 ZFRQ96KR1 1074 aaKnown RBP12.05□□□□□ -0.48
TPR-208ENST00000492973 PHOX2BQ99453 314 aa12.04□□□□□ -0.48
TPR-208ENST00000492973 RCCD1A6NED2 376 aa12.02□□□□□ -0.49
TPR-208ENST00000492973 MMRN1Q13201 1228 aa12.02□□□□□ -0.49
TPR-208ENST00000492973 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.01□□□□□ -0.49
TPR-208ENST00000492973 GOLGA8CPA6NN73 597 aa12.01□□□□□ -0.49
TPR-208ENST00000492973 DNAJB2P25686 324 aa12.01□□□□□ -0.49
TPR-208ENST00000492973 SLC24A3Q9HC58 644 aa12.01□□□□□ -0.49
TPR-208ENST00000492973 CFTRP13569 1480 aa12.01□□□□□ -0.49
TPR-208ENST00000492973 WNT2BQ93097 391 aa12□□□□□ -0.49
TPR-208ENST00000492973 TMEM134Q9H6X4 195 aa12□□□□□ -0.49
TPR-208ENST00000492973 ANKK1Q8NFD2 765 aa11.99□□□□□ -0.49
TPR-208ENST00000492973 AK7Q96M32 723 aa11.99□□□□□ -0.49
TPR-208ENST00000492973 LAMC3Q9Y6N6 1575 aa11.99□□□□□ -0.49
TPR-208ENST00000492973 SAMD7Q7Z3H4 446 aa11.98□□□□□ -0.49
TPR-208ENST00000492973 RNF166Q96A37 237 aaPredicted RBP11.98□□□□□ -0.49
TPR-208ENST00000492973 KCTD12Q96CX2 325 aaKnown RBP11.98□□□□□ -0.49
TPR-208ENST00000492973 SOWAHBA6NEL2 793 aa11.96□□□□□ -0.49
TPR-208ENST00000492973 SWT1Q5T5J6 900 aaKnown RBP11.96□□□□□ -0.49
TPR-208ENST00000492973 THSD4Q6ZMP0 1018 aa11.96□□□□□ -0.49
TPR-208ENST00000492973 NLRP7Q8WX94 980 aa11.96□□□□□ -0.49
TPR-208ENST00000492973 PDS5BQ9NTI5 1447 aa11.95□□□□□ -0.5
TPR-208ENST00000492973 TRIM66O15016 1216 aa11.95□□□□□ -0.5
TPR-208ENST00000492973 LRCH3Q96II8 777 aa11.95□□□□□ -0.5
TPR-208ENST00000492973 PRKCSHP14314 528 aaPredicted RBP11.94□□□□□ -0.5
TPR-208ENST00000492973 BCAMP50895 628 aa11.94□□□□□ -0.5
TPR-208ENST00000492973 AMHR2Q16671 573 aa11.94□□□□□ -0.5
TPR-208ENST00000492973 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.94□□□□□ -0.5
TPR-208ENST00000492973 ERCC6Q03468 1493 aa11.92□□□□□ -0.5
TPR-208ENST00000492973 HDGFP51858 240 aaKnown RBP11.92□□□□□ -0.5
TPR-208ENST00000492973 DAXXQ9UER7 740 aaPredicted RBP11.92□□□□□ -0.5
TPR-208ENST00000492973 TMUB1Q9BVT8 246 aa11.91□□□□□ -0.5
TPR-208ENST00000492973 FANCD2Q9BXW9 1451 aa11.9□□□□□ -0.5
TPR-208ENST00000492973 MDM2Q00987 491 aaPredicted RBP11.9□□□□□ -0.5
TPR-208ENST00000492973 SLF2Q8IX21 1173 aa11.89□□□□□ -0.51
TPR-208ENST00000492973 CLCN1P35523 988 aa11.88□□□□□ -0.51
TPR-208ENST00000492973 REPIN1Q9BWE0 567 aaKnown RBP11.88□□□□□ -0.51
TPR-208ENST00000492973 HPS5Q9UPZ3 1129 aa11.88□□□□□ -0.51
TPR-208ENST00000492973 GPCPD1Q9NPB8 672 aa11.87□□□□□ -0.51
TPR-208ENST00000492973 TSR3Q9UJK0 312 aaKnown RBP11.87□□□□□ -0.51
TPR-208ENST00000492973 PDE4DQ08499 809 aa11.86□□□□□ -0.51
TPR-208ENST00000492973 CEP164Q9UPV0 1460 aa11.85□□□□□ -0.51
TPR-208ENST00000492973 SLC4A3P48751 1232 aa11.85□□□□□ -0.51
TPR-208ENST00000492973 PARP9Q8IXQ6 854 aa11.85□□□□□ -0.51
TPR-208ENST00000492973 WBP1LQ9NX94 342 aa11.85□□□□□ -0.51
TPR-208ENST00000492973 RNF40O75150 1001 aa11.84□□□□□ -0.51
TPR-208ENST00000492973 SLC10A3P09131 477 aa11.84□□□□□ -0.51
TPR-208ENST00000492973 PTPN5P54829 565 aa11.84□□□□□ -0.51
TPR-208ENST00000492973 HCSTQ9UBK5 93 aa11.84□□□□□ -0.51
TPR-208ENST00000492973 PPP4CP60510 307 aa11.83□□□□□ -0.52
TPR-208ENST00000492973 TTLL12Q14166 644 aaPredicted RBP11.83□□□□□ -0.52
TPR-208ENST00000492973 PLSCR2Q9NRY7 297 aa11.83□□□□□ -0.52
TPR-208ENST00000492973 FAM217BQ9NTX9 383 aaPredicted RBP11.83□□□□□ -0.52
TPR-208ENST00000492973 KIF21AQ7Z4S6 1674 aa11.82□□□□□ -0.52
TPR-208ENST00000492973 SULF1Q8IWU6 871 aa11.82□□□□□ -0.52
TPR-208ENST00000492973 NECTIN2Q92692 538 aa11.82□□□□□ -0.52
TPR-208ENST00000492973 MRC2Q9UBG0 1479 aa11.82□□□□□ -0.52
TPR-208ENST00000492973 DDX11L8A8MPP1 907 aa11.81□□□□□ -0.52
TPR-208ENST00000492973 GIGYF2Q6Y7W6 1299 aaKnown RBP11.81□□□□□ -0.52
TPR-208ENST00000492973 NYAP1Q6ZVC0 841 aa11.8□□□□□ -0.52
TPR-208ENST00000492973 THOC2Q8NI27 1593 aaKnown RBP11.79□□□□□ -0.52
TPR-208ENST00000492973 CD46P15529 392 aa11.79□□□□□ -0.52
TPR-208ENST00000492973 URB2Q14146 1524 aaKnown RBP11.79□□□□□ -0.52
TPR-208ENST00000492973 RSPH4AQ5TD94 716 aa11.78□□□□□ -0.52
TPR-208ENST00000492973 SSTR3P32745 418 aaPredicted RBP11.77□□□□□ -0.53
TPR-208ENST00000492973 APLP1P51693 650 aa11.77□□□□□ -0.53
TPR-208ENST00000492973 RDH13Q8NBN7 331 aa11.77□□□□□ -0.53
TPR-208ENST00000492973 CFHP08603 1231 aa11.76□□□□□ -0.53
TPR-208ENST00000492973 PRDM2Q13029 1718 aa11.76□□□□□ -0.53
TPR-208ENST00000492973 WDR62O43379 1518 aa11.76□□□□□ -0.53
TPR-208ENST00000492973 CUX2O14529 1486 aa11.75□□□□□ -0.53
TPR-208ENST00000492973 MS4A1P11836 297 aa11.74□□□□□ -0.53
TPR-208ENST00000492973 GCGRP47871 477 aa11.74□□□□□ -0.53
TPR-208ENST00000492973 GPBP1L1Q9HC44 474 aaPredicted RBP11.74□□□□□ -0.53
TPR-208ENST00000492973 KMT5BQ4FZB7 885 aa11.73□□□□□ -0.53
TPR-208ENST00000492973 TOPBP1Q92547 1522 aa11.73□□□□□ -0.53
TPR-208ENST00000492973 PRR14Q9BWN1 585 aa11.73□□□□□ -0.53
TPR-208ENST00000492973 KDM4CQ9H3R0 1056 aa11.72□□□□□ -0.53
TPR-208ENST00000492973 ACTN4O43707 911 aaKnown RBP11.71□□□□□ -0.53
TPR-208ENST00000492973 BRPF1P55201 1214 aaPredicted RBP11.71□□□□□ -0.53
TPR-208ENST00000492973 ABCC8Q09428 1581 aa11.7□□□□□ -0.54
TPR-208ENST00000492973 DNMBPQ6XZF7 1577 aa11.7□□□□□ -0.54
TPR-208ENST00000492973 CUX1P39880 1505 aa11.7□□□□□ -0.54
TPR-208ENST00000492973 NEUROD2Q15784 382 aa11.68□□□□□ -0.54
TPR-208ENST00000492973 BEGAINQ9BUH8 593 aa11.68□□□□□ -0.54
TPR-208ENST00000492973 WRNQ14191 1432 aaPredicted RBP eCLIP11.68□□□□□ -0.54
TPR-208ENST00000492973 FUT2Q10981 343 aa11.66□□□□□ -0.54
TPR-208ENST00000492973 KDM4AO75164 1064 aa11.65□□□□□ -0.54
TPR-208ENST00000492973 PCDHB3Q9Y5E6 796 aa11.65□□□□□ -0.54
TPR-208ENST00000492973 POLA1P09884 1462 aaPredicted RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 124.1 ms