RNA–Protein interactions for RNA: ENST00000492883.5

CCM2-217, Transcript of CCM2 scaffold protein, humanhuman

TSL 2

Gene CCM2, Length 1,061 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-217ENST00000492883 KDM5AP29375 1690 aaKnown RBP20.48■□□□□ 0.87
CCM2-217ENST00000492883 RGL3Q3MIN7 710 aa20.47■□□□□ 0.87
CCM2-217ENST00000492883 PCGF6Q9BYE7 350 aa20.47■□□□□ 0.87
CCM2-217ENST00000492883 CLTCL1P53675 1640 aa20.46■□□□□ 0.87
CCM2-217ENST00000492883 ZFYVE9O95405 1425 aa20.45■□□□□ 0.86
CCM2-217ENST00000492883 NEURL4Q96JN8 1562 aa20.45■□□□□ 0.86
CCM2-217ENST00000492883 ANKRD30BQ9BXX2 1392 aa20.45■□□□□ 0.86
CCM2-217ENST00000492883 SLC26A8Q96RN1 970 aa20.44■□□□□ 0.86
CCM2-217ENST00000492883 ZNF335Q9H4Z2 1342 aaPredicted RBP20.44■□□□□ 0.86
CCM2-217ENST00000492883 RPGRIP1LQ68CZ1 1315 aa20.43■□□□□ 0.86
CCM2-217ENST00000492883 VGFO15240 615 aaPredicted RBP20.41■□□□□ 0.86
CCM2-217ENST00000492883 PLEKHG1Q9ULL1 1385 aa20.41■□□□□ 0.86
CCM2-217ENST00000492883 POLR1AO95602 1720 aaPredicted RBP20.4■□□□□ 0.86
CCM2-217ENST00000492883 CERKQ8TCT0 537 aa20.38■□□□□ 0.85
CCM2-217ENST00000492883 TBX22Q9Y458 520 aa20.37■□□□□ 0.85
CCM2-217ENST00000492883 IQGAP1P46940 1657 aa20.37■□□□□ 0.85
CCM2-217ENST00000492883 SPATA31E1Q6ZUB1 1445 aa20.36■□□□□ 0.85
CCM2-217ENST00000492883 MYO5BQ9ULV0 1848 aa20.34■□□□□ 0.85
CCM2-217ENST00000492883 KIF1BO60333 1816 aa20.33■□□□□ 0.85
CCM2-217ENST00000492883 DHX57Q6P158 1386 aaKnown RBP20.33■□□□□ 0.84
CCM2-217ENST00000492883 KCNA6P17658 529 aa20.32■□□□□ 0.84
CCM2-217ENST00000492883 NEXMIFQ5QGS0 1516 aa20.32■□□□□ 0.84
CCM2-217ENST00000492883 LTBP4Q8N2S1 1624 aa20.3■□□□□ 0.84
CCM2-217ENST00000492883 ADGRF5Q8IZF2 1346 aa20.29■□□□□ 0.84
CCM2-217ENST00000492883 ADAMTS13Q76LX8 1427 aa20.29■□□□□ 0.84
CCM2-217ENST00000492883 SIN3AQ96ST3 1273 aa20.29■□□□□ 0.84
CCM2-217ENST00000492883 NEUROD1Q13562 356 aa20.28■□□□□ 0.84
CCM2-217ENST00000492883 KDM2AQ9Y2K7 1162 aa20.28■□□□□ 0.84
CCM2-217ENST00000492883 DCAF11Q8TEB1 546 aa20.27■□□□□ 0.84
CCM2-217ENST00000492883 CPS1P31327 1500 aa20.26■□□□□ 0.83
CCM2-217ENST00000492883 PROSER2Q86WR7 435 aaPredicted RBP20.25■□□□□ 0.83
CCM2-217ENST00000492883 PIK3R4Q99570 1358 aa20.24■□□□□ 0.83
CCM2-217ENST00000492883 AMOTL2Q9Y2J4 779 aa20.24■□□□□ 0.83
CCM2-217ENST00000492883 STAC3Q96MF2 364 aa20.23■□□□□ 0.83
CCM2-217ENST00000492883 SETBP1Q9Y6X0 1596 aa20.23■□□□□ 0.83
CCM2-217ENST00000492883 METP08581 1390 aa20.22■□□□□ 0.83
CCM2-217ENST00000492883 DIP2AQ14689 1571 aa20.21■□□□□ 0.83
CCM2-217ENST00000492883 RBM33Q96EV2 1170 aaKnown RBP20.2■□□□□ 0.82
CCM2-217ENST00000492883 FBXO41Q8TF61 875 aa20.19■□□□□ 0.82
CCM2-217ENST00000492883 C14orf93Q9H972 538 aaKnown RBP20.19■□□□□ 0.82
CCM2-217ENST00000492883 LRRC7Q96NW7 1537 aa20.18■□□□□ 0.82
CCM2-217ENST00000492883 CFAP70Q5T0N1 1121 aa20.18■□□□□ 0.82
CCM2-217ENST00000492883 PPLO60437 1756 aa20.17■□□□□ 0.82
CCM2-217ENST00000492883 UBAP1LF5GYI3 381 aa20.17■□□□□ 0.82
CCM2-217ENST00000492883 TMEM132EQ6IEE7 984 aa20.17■□□□□ 0.82
CCM2-217ENST00000492883 L3MBTL2Q969R5 705 aa20.17■□□□□ 0.82
CCM2-217ENST00000492883 TMEM94Q12767 1356 aa20.17■□□□□ 0.82
CCM2-217ENST00000492883 PIK3C2GO75747 1445 aa20.17■□□□□ 0.82
CCM2-217ENST00000492883 PTPRUQ92729 1446 aa20.17■□□□□ 0.82
CCM2-217ENST00000492883 MYOM2P54296 1465 aa20.17■□□□□ 0.82
CCM2-217ENST00000492883 IQSEC2Q5JU85 1478 aa20.17■□□□□ 0.82
CCM2-217ENST00000492883 C14orf37Q86TY3 774 aa20.16■□□□□ 0.82
CCM2-217ENST00000492883 ALKQ9UM73 1620 aa20.16■□□□□ 0.82
CCM2-217ENST00000492883 NRXN3Q9Y4C0 1643 aa20.16■□□□□ 0.82
CCM2-217ENST00000492883 NKTRP30414 1462 aaKnown RBP20.14■□□□□ 0.81
CCM2-217ENST00000492883 TOM1O60784 492 aa20.14■□□□□ 0.81
CCM2-217ENST00000492883 STK26Q9P289 416 aa20.14■□□□□ 0.81
CCM2-217ENST00000492883 STRCP1A6NGW2 1772 aa20.13■□□□□ 0.81
CCM2-217ENST00000492883 NRXN1Q9ULB1 1477 aa20.12■□□□□ 0.81
CCM2-217ENST00000492883 ILDR1Q86SU0 546 aaPredicted RBP20.12■□□□□ 0.81
CCM2-217ENST00000492883 NWD1Q149M9 1564 aa20.12■□□□□ 0.81
CCM2-217ENST00000492883 CCER1Q8TC90 406 aaPredicted RBP20.11■□□□□ 0.81
CCM2-217ENST00000492883 IFT172Q9UG01 1749 aa20.09■□□□□ 0.81
CCM2-217ENST00000492883 TONSLQ96HA7 1378 aa20.08■□□□□ 0.81
CCM2-217ENST00000492883 SCAF1Q9H7N4 1312 aaKnown RBP20.08■□□□□ 0.81
CCM2-217ENST00000492883 PIP4K2BP78356 416 aa20.08■□□□□ 0.81
CCM2-217ENST00000492883 C19orf44Q9H6X5 657 aa20.08■□□□□ 0.81
CCM2-217ENST00000492883 LRPPRCP42704 1394 aaKnown RBP20.08■□□□□ 0.8
CCM2-217ENST00000492883 MSH6P52701 1360 aa20.08■□□□□ 0.8
CCM2-217ENST00000492883 CHD2O14647 1828 aaKnown RBP20.07■□□□□ 0.8
CCM2-217ENST00000492883 NCOA3Q9Y6Q9 1424 aa20.07■□□□□ 0.8
CCM2-217ENST00000492883 ABCC11Q96J66 1382 aa20.06■□□□□ 0.8
CCM2-217ENST00000492883 ROBO2Q9HCK4 1378 aa20.06■□□□□ 0.8
CCM2-217ENST00000492883 CLSPNQ9HAW4 1339 aa20.05■□□□□ 0.8
CCM2-217ENST00000492883 YTHDC2Q9H6S0 1430 aaKnown RBP20.04■□□□□ 0.8
CCM2-217ENST00000492883 ATF3P18847 181 aa20.04■□□□□ 0.8
CCM2-217ENST00000492883 WAPLQ7Z5K2 1190 aa20.03■□□□□ 0.8
CCM2-217ENST00000492883 TRAK1Q9UPV9 953 aa20.03■□□□□ 0.8
CCM2-217ENST00000492883 PRAG1Q86YV5 1406 aa20.02■□□□□ 0.8
CCM2-217ENST00000492883 CADPS2Q86UW7 1296 aa20.02■□□□□ 0.8
CCM2-217ENST00000492883 SIRT1Q96EB6 747 aa20.02■□□□□ 0.8
CCM2-217ENST00000492883 XRN1Q8IZH2 1706 aaKnown RBP20.02■□□□□ 0.79
CCM2-217ENST00000492883 PTCH1Q13635 1447 aa20.02■□□□□ 0.79
CCM2-217ENST00000492883 NBPF1Q3BBV0 1214 aa20.01■□□□□ 0.79
CCM2-217ENST00000492883 SETD1AO15047 1707 aaKnown RBP20.01■□□□□ 0.79
CCM2-217ENST00000492883 POGKQ9P215 609 aa20■□□□□ 0.79
CCM2-217ENST00000492883 ASXL1Q8IXJ9 1541 aa20■□□□□ 0.79
CCM2-217ENST00000492883 SLAIN2Q9P270 581 aa19.99■□□□□ 0.79
CCM2-217ENST00000492883 PRAM1Q96QH2 718 aa19.98■□□□□ 0.79
CCM2-217ENST00000492883 TECPR2O15040 1411 aa19.98■□□□□ 0.79
CCM2-217ENST00000492883 LAMC1P11047 1609 aa19.98■□□□□ 0.79
CCM2-217ENST00000492883 SAFB2Q14151 953 aaKnown RBP eCLIP19.97■□□□□ 0.795e-8■■■□□ 18
CCM2-217ENST00000492883 NBPF8Q3BBV2 869 aa19.97■□□□□ 0.79
CCM2-217ENST00000492883 PLEKHH1Q9ULM0 1364 aa19.96■□□□□ 0.79
CCM2-217ENST00000492883 FAM135BQ49AJ0 1406 aa19.95■□□□□ 0.78
CCM2-217ENST00000492883 ADGRL3Q9HAR2 1447 aa19.95■□□□□ 0.78
CCM2-217ENST00000492883 TIMELESSQ9UNS1 1208 aa19.95■□□□□ 0.78
CCM2-217ENST00000492883 ADGRB1O14514 1584 aa19.95■□□□□ 0.78
CCM2-217ENST00000492883 XIRP1Q702N8 1843 aaKnown RBP19.92■□□□□ 0.78
CCM2-217ENST00000492883 ROCK2O75116 1388 aaKnown RBP19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms