RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 ANKRD30AQ9BXX3 1397 aa20.58■□□□□ 0.88
HDAC3-213ENST00000492506 ZFYVE9O95405 1425 aa20.56■□□□□ 0.88
HDAC3-213ENST00000492506 CHIC2Q9UKJ5 165 aa20.56■□□□□ 0.88
HDAC3-213ENST00000492506 GCC2Q8IWJ2 1684 aa20.55■□□□□ 0.88
HDAC3-213ENST00000492506 SLC52A1Q9NWF4 448 aa20.55■□□□□ 0.88
HDAC3-213ENST00000492506 COL16A1Q07092 1604 aaPredicted RBP20.54■□□□□ 0.88
HDAC3-213ENST00000492506 PELP1Q8IZL8 1130 aaKnown RBP20.54■□□□□ 0.88
HDAC3-213ENST00000492506 SLAIN2Q9P270 581 aa20.54■□□□□ 0.88
HDAC3-213ENST00000492506 MSH6P52701 1360 aa20.54■□□□□ 0.88
HDAC3-213ENST00000492506 TMEM131LA2VDJ0 1609 aa20.53■□□□□ 0.88
HDAC3-213ENST00000492506 ADGRL2O95490 1459 aa20.53■□□□□ 0.88
HDAC3-213ENST00000492506 RPRD2Q5VT52 1461 aaKnown RBP20.53■□□□□ 0.88
HDAC3-213ENST00000492506 JCADQ9P266 1359 aa20.51■□□□□ 0.87
HDAC3-213ENST00000492506 PLEKHG1Q9ULL1 1385 aa20.51■□□□□ 0.87
HDAC3-213ENST00000492506 RIMS2Q9UQ26 1411 aa20.48■□□□□ 0.87
HDAC3-213ENST00000492506 LRP6O75581 1613 aa20.47■□□□□ 0.87
HDAC3-213ENST00000492506 BCANQ96GW7 911 aa20.47■□□□□ 0.87
HDAC3-213ENST00000492506 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.47■□□□□ 0.87
HDAC3-213ENST00000492506 ANKRD50Q9ULJ7 1429 aa20.45■□□□□ 0.86
HDAC3-213ENST00000492506 NCOA3Q9Y6Q9 1424 aa20.45■□□□□ 0.86
HDAC3-213ENST00000492506 SHPRHQ149N8 1683 aa20.45■□□□□ 0.86
HDAC3-213ENST00000492506 APLP2Q06481 763 aa20.44■□□□□ 0.86
HDAC3-213ENST00000492506 TBX22Q9Y458 520 aa20.44■□□□□ 0.86
HDAC3-213ENST00000492506 AHDC1Q5TGY3 1603 aaPredicted RBP20.44■□□□□ 0.86
HDAC3-213ENST00000492506 ADAMTS13Q76LX8 1427 aa20.44■□□□□ 0.86
HDAC3-213ENST00000492506 E9PCH4 1651 aa20.43■□□□□ 0.86
HDAC3-213ENST00000492506 UNC13BO14795 1591 aa20.42■□□□□ 0.86
HDAC3-213ENST00000492506 DIP2AQ14689 1571 aa20.41■□□□□ 0.86
HDAC3-213ENST00000492506 PPP1R15AO75807 674 aaPredicted RBP20.4■□□□□ 0.86
HDAC3-213ENST00000492506 HDGFP51858 240 aaKnown RBP20.4■□□□□ 0.86
HDAC3-213ENST00000492506 SPATA31A6Q5VVP1 1343 aa20.4■□□□□ 0.86
HDAC3-213ENST00000492506 PIK3R4Q99570 1358 aa20.37■□□□□ 0.85
HDAC3-213ENST00000492506 C19orf44Q9H6X5 657 aa20.37■□□□□ 0.85
HDAC3-213ENST00000492506 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.36■□□□□ 0.85
HDAC3-213ENST00000492506 NUTM2DQ5VT03 806 aaPredicted RBP20.35■□□□□ 0.85
HDAC3-213ENST00000492506 CADPS2Q86UW7 1296 aa20.35■□□□□ 0.85
HDAC3-213ENST00000492506 UPF1Q92900 1129 aaKnown RBP eCLIP20.35■□□□□ 0.85
HDAC3-213ENST00000492506 IQGAP3Q86VI3 1631 aa20.35■□□□□ 0.85
HDAC3-213ENST00000492506 FAM50AQ14320 339 aaKnown RBP20.34■□□□□ 0.85
HDAC3-213ENST00000492506 ZNF772Q68DY9 489 aaPredicted RBP20.34■□□□□ 0.85
HDAC3-213ENST00000492506 PTPRUQ92729 1446 aa20.34■□□□□ 0.85
HDAC3-213ENST00000492506 TRPM2O94759 1503 aa20.33■□□□□ 0.85
HDAC3-213ENST00000492506 C14orf37Q86TY3 774 aa20.33■□□□□ 0.85
HDAC3-213ENST00000492506 NRXN3Q9Y4C0 1643 aa20.32■□□□□ 0.84
HDAC3-213ENST00000492506 CHGAP10645 457 aaKnown RBP20.32■□□□□ 0.84
HDAC3-213ENST00000492506 XRN1Q8IZH2 1706 aaKnown RBP20.32■□□□□ 0.84
HDAC3-213ENST00000492506 ATF3P18847 181 aa20.31■□□□□ 0.84
HDAC3-213ENST00000492506 MEX3CQ5U5Q3 659 aaKnown RBP20.31■□□□□ 0.84
HDAC3-213ENST00000492506 BRINP3Q76B58 766 aa20.31■□□□□ 0.84
HDAC3-213ENST00000492506 TRIM52Q96A61 297 aa20.3■□□□□ 0.84
HDAC3-213ENST00000492506 NHSL1Q5SYE7 1610 aa20.3■□□□□ 0.84
HDAC3-213ENST00000492506 AMOTL2Q9Y2J4 779 aa20.29■□□□□ 0.84
HDAC3-213ENST00000492506 DCCP43146 1447 aa20.27■□□□□ 0.84
HDAC3-213ENST00000492506 ASXL1Q8IXJ9 1541 aa20.27■□□□□ 0.84
HDAC3-213ENST00000492506 CDK12Q9NYV4 1490 aaPredicted RBP20.27■□□□□ 0.84
HDAC3-213ENST00000492506 SETBP1Q9Y6X0 1596 aa20.26■□□□□ 0.83
HDAC3-213ENST00000492506 SETD5Q9C0A6 1442 aa20.26■□□□□ 0.83
HDAC3-213ENST00000492506 ROCK1Q13464 1354 aa20.25■□□□□ 0.83
HDAC3-213ENST00000492506 RXRBP28702 533 aa20.25■□□□□ 0.83
HDAC3-213ENST00000492506 MST1RQ04912 1400 aa20.25■□□□□ 0.83
HDAC3-213ENST00000492506 SPHKAPQ2M3C7 1700 aa20.23■□□□□ 0.83
HDAC3-213ENST00000492506 NUTM2BA6NNL0 878 aaPredicted RBP20.22■□□□□ 0.83
HDAC3-213ENST00000492506 NUTM2EB1AL46 878 aaPredicted RBP20.22■□□□□ 0.83
HDAC3-213ENST00000492506 NUTM2AQ8IVF1 878 aaPredicted RBP20.22■□□□□ 0.83
HDAC3-213ENST00000492506 AFF2P51816 1311 aa20.21■□□□□ 0.83
HDAC3-213ENST00000492506 NALCNQ8IZF0 1738 aa20.2■□□□□ 0.82
HDAC3-213ENST00000492506 NUP155O75694 1391 aa20.2■□□□□ 0.82
HDAC3-213ENST00000492506 METP08581 1390 aa20.19■□□□□ 0.82
HDAC3-213ENST00000492506 RGS12O14924 1447 aa20.17■□□□□ 0.82
HDAC3-213ENST00000492506 SRCAPQ6ZRS2 3230 aa20.17■□□□□ 0.82
HDAC3-213ENST00000492506 LRRC59Q96AG4 307 aaKnown RBP20.16■□□□□ 0.82
HDAC3-213ENST00000492506 PNPLA6Q8IY17 1366 aa20.16■□□□□ 0.82
HDAC3-213ENST00000492506 ADGRL3Q9HAR2 1447 aa20.16■□□□□ 0.82
HDAC3-213ENST00000492506 LAMC1P11047 1609 aa20.16■□□□□ 0.82
HDAC3-213ENST00000492506 DDX17Q92841 729 aaKnown RBP20.15■□□□□ 0.82
HDAC3-213ENST00000492506 NEXMIFQ5QGS0 1516 aa20.14■□□□□ 0.81
HDAC3-213ENST00000492506 MYT1Q01538 1121 aa20.14■□□□□ 0.81
HDAC3-213ENST00000492506 CLTCL1P53675 1640 aa20.13■□□□□ 0.81
HDAC3-213ENST00000492506 C8orf37Q96NL8 207 aa20.12■□□□□ 0.81
HDAC3-213ENST00000492506 RBM6P78332 1123 aaKnown RBP20.11■□□□□ 0.81
HDAC3-213ENST00000492506 QTRT2Q9H974 415 aaKnown RBP20.11■□□□□ 0.81
HDAC3-213ENST00000492506 KIF1BO60333 1816 aa20.09■□□□□ 0.81
HDAC3-213ENST00000492506 C1orf167Q5SNV9 1468 aa20.09■□□□□ 0.81
HDAC3-213ENST00000492506 ZNF326Q5BKZ1 582 aaKnown RBP20.08■□□□□ 0.81
HDAC3-213ENST00000492506 EP400Q96L91 3159 aa20.06■□□□□ 0.8
HDAC3-213ENST00000492506 ITGAEP38570 1179 aa20.05■□□□□ 0.8
HDAC3-213ENST00000492506 PTCH1Q13635 1447 aa20.04■□□□□ 0.8
HDAC3-213ENST00000492506 SOS2Q07890 1332 aaPredicted RBP20.03■□□□□ 0.8
HDAC3-213ENST00000492506 COL22A1Q8NFW1 1626 aaPredicted RBP20.03■□□□□ 0.8
HDAC3-213ENST00000492506 ADAMTS2O95450 1211 aa20.03■□□□□ 0.8
HDAC3-213ENST00000492506 NGLY1Q96IV0 654 aa20.03■□□□□ 0.8
HDAC3-213ENST00000492506 ROBO2Q9HCK4 1378 aa20.02■□□□□ 0.8
HDAC3-213ENST00000492506 PRAG1Q86YV5 1406 aa20.02■□□□□ 0.79
HDAC3-213ENST00000492506 ORAI2Q96SN7 254 aa20.01■□□□□ 0.79
HDAC3-213ENST00000492506 MARF1Q9Y4F3 1742 aaKnown RBP20■□□□□ 0.79
HDAC3-213ENST00000492506 ATAD2Q6PL18 1390 aa19.98■□□□□ 0.79
HDAC3-213ENST00000492506 FNBP4Q8N3X1 1017 aaPredicted RBP19.98■□□□□ 0.79
HDAC3-213ENST00000492506 USP21Q9UK80 565 aa19.98■□□□□ 0.79
HDAC3-213ENST00000492506 PPLO60437 1756 aa19.98■□□□□ 0.79
HDAC3-213ENST00000492506 ATRNO75882 1429 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 92.4 ms