RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 SLC26A8Q96RN1 970 aa14.02□□□□□ -0.17
HDAC3-212ENST00000492407 PHF23Q9BUL5 403 aaPredicted RBP14.02□□□□□ -0.17
HDAC3-212ENST00000492407 TBX22Q9Y458 520 aa14.02□□□□□ -0.17
HDAC3-212ENST00000492407 ZFYVE9O95405 1425 aa14.01□□□□□ -0.17
HDAC3-212ENST00000492407 NCOA3Q9Y6Q9 1424 aa14.01□□□□□ -0.17
HDAC3-212ENST00000492407 UNC13BO14795 1591 aa14□□□□□ -0.17
HDAC3-212ENST00000492407 BCANQ96GW7 911 aa13.99□□□□□ -0.17
HDAC3-212ENST00000492407 NWD1Q149M9 1564 aa13.99□□□□□ -0.17
HDAC3-212ENST00000492407 RIMS2Q9UQ26 1411 aa13.98□□□□□ -0.17
HDAC3-212ENST00000492407 PIK3R4Q99570 1358 aa13.98□□□□□ -0.17
HDAC3-212ENST00000492407 SLC24A1O60721 1099 aa13.98□□□□□ -0.17
HDAC3-212ENST00000492407 PPP1R15AO75807 674 aaPredicted RBP13.98□□□□□ -0.17
HDAC3-212ENST00000492407 MSH6P52701 1360 aa13.97□□□□□ -0.17
HDAC3-212ENST00000492407 GCC2Q8IWJ2 1684 aa13.97□□□□□ -0.17
HDAC3-212ENST00000492407 SLAIN2Q9P270 581 aa13.96□□□□□ -0.17
HDAC3-212ENST00000492407 XIRP1Q702N8 1843 aaKnown RBP13.96□□□□□ -0.17
HDAC3-212ENST00000492407 TMEM131LA2VDJ0 1609 aa13.96□□□□□ -0.17
HDAC3-212ENST00000492407 NUP155O75694 1391 aa13.96□□□□□ -0.18
HDAC3-212ENST00000492407 IQGAP3Q86VI3 1631 aa13.94□□□□□ -0.18
HDAC3-212ENST00000492407 DIP2AQ14689 1571 aa13.92□□□□□ -0.18
HDAC3-212ENST00000492407 CHGAP10645 457 aaKnown RBP13.92□□□□□ -0.18
HDAC3-212ENST00000492407 ADAMTS13Q76LX8 1427 aa13.91□□□□□ -0.18
HDAC3-212ENST00000492407 CADPS2Q86UW7 1296 aa13.91□□□□□ -0.18
HDAC3-212ENST00000492407 C19orf44Q9H6X5 657 aa13.91□□□□□ -0.18
HDAC3-212ENST00000492407 E9PCH4 1651 aa13.91□□□□□ -0.18
HDAC3-212ENST00000492407 SENP3Q9H4L4 574 aaPredicted RBP13.9□□□□□ -0.18
HDAC3-212ENST00000492407 RGS17Q9UGC6 210 aaPredicted RBP13.9□□□□□ -0.18
HDAC3-212ENST00000492407 CHD2O14647 1828 aaKnown RBP13.9□□□□□ -0.18
HDAC3-212ENST00000492407 PELP1Q8IZL8 1130 aaKnown RBP13.89□□□□□ -0.19
HDAC3-212ENST00000492407 RBM33Q96EV2 1170 aaKnown RBP13.89□□□□□ -0.19
HDAC3-212ENST00000492407 ROBO1Q9Y6N7 1651 aa13.88□□□□□ -0.19
HDAC3-212ENST00000492407 JCADQ9P266 1359 aa13.88□□□□□ -0.19
HDAC3-212ENST00000492407 ITGAEP38570 1179 aa13.87□□□□□ -0.19
HDAC3-212ENST00000492407 TRPM2O94759 1503 aa13.86□□□□□ -0.19
HDAC3-212ENST00000492407 ATF3P18847 181 aa13.86□□□□□ -0.19
HDAC3-212ENST00000492407 C14orf37Q86TY3 774 aa13.86□□□□□ -0.19
HDAC3-212ENST00000492407 AMOTL2Q9Y2J4 779 aa13.86□□□□□ -0.19
HDAC3-212ENST00000492407 RRBP1Q9P2E9 1410 aaKnown RBP13.85□□□□□ -0.19
HDAC3-212ENST00000492407 DCCP43146 1447 aa13.84□□□□□ -0.19
HDAC3-212ENST00000492407 NUTM2DQ5VT03 806 aaPredicted RBP13.84□□□□□ -0.19
HDAC3-212ENST00000492407 MYO5BQ9ULV0 1848 aa13.84□□□□□ -0.19
HDAC3-212ENST00000492407 SPATA31A6Q5VVP1 1343 aa13.84□□□□□ -0.19
HDAC3-212ENST00000492407 SETBP1Q9Y6X0 1596 aa13.83□□□□□ -0.2
HDAC3-212ENST00000492407 PTPRUQ92729 1446 aa13.81□□□□□ -0.2
HDAC3-212ENST00000492407 ZNF326Q5BKZ1 582 aaKnown RBP13.81□□□□□ -0.2
HDAC3-212ENST00000492407 POTEAQ6S8J7 498 aa13.81□□□□□ -0.2
HDAC3-212ENST00000492407 NAIPQ13075 1403 aa13.81□□□□□ -0.2
HDAC3-212ENST00000492407 RPGRIP1LQ68CZ1 1315 aa13.8□□□□□ -0.2
HDAC3-212ENST00000492407 AHDC1Q5TGY3 1603 aaPredicted RBP13.79□□□□□ -0.2
HDAC3-212ENST00000492407 PHLPP1O60346 1717 aa13.79□□□□□ -0.2
HDAC3-212ENST00000492407 VGFO15240 615 aaPredicted RBP13.79□□□□□ -0.2
HDAC3-212ENST00000492407 PPARGC1BQ86YN6 1023 aaKnown RBP13.79□□□□□ -0.2
HDAC3-212ENST00000492407 SPHKAPQ2M3C7 1700 aa13.78□□□□□ -0.2
HDAC3-212ENST00000492407 BRINP3Q76B58 766 aa13.78□□□□□ -0.2
HDAC3-212ENST00000492407 COL16A1Q07092 1604 aaPredicted RBP13.78□□□□□ -0.2
HDAC3-212ENST00000492407 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.78□□□□□ -0.2
HDAC3-212ENST00000492407 HFM1A2PYH4 1435 aa13.77□□□□□ -0.21
HDAC3-212ENST00000492407 METP08581 1390 aa13.77□□□□□ -0.21
HDAC3-212ENST00000492407 ZNF772Q68DY9 489 aaPredicted RBP13.77□□□□□ -0.21
HDAC3-212ENST00000492407 NRXN3Q9Y4C0 1643 aa13.76□□□□□ -0.21
HDAC3-212ENST00000492407 XRN1Q8IZH2 1706 aaKnown RBP13.76□□□□□ -0.21
HDAC3-212ENST00000492407 ACIN1Q9UKV3 1341 aaKnown RBP13.75□□□□□ -0.21
HDAC3-212ENST00000492407 NEXMIFQ5QGS0 1516 aa13.74□□□□□ -0.21
HDAC3-212ENST00000492407 PRAG1Q86YV5 1406 aa13.74□□□□□ -0.21
HDAC3-212ENST00000492407 SETD5Q9C0A6 1442 aa13.74□□□□□ -0.21
HDAC3-212ENST00000492407 LRRC59Q96AG4 307 aaKnown RBP13.74□□□□□ -0.21
HDAC3-212ENST00000492407 MST1RQ04912 1400 aa13.73□□□□□ -0.21
HDAC3-212ENST00000492407 ADGRL3Q9HAR2 1447 aa13.73□□□□□ -0.21
HDAC3-212ENST00000492407 MEX3CQ5U5Q3 659 aaKnown RBP13.73□□□□□ -0.21
HDAC3-212ENST00000492407 TRIM52Q96A61 297 aa13.73□□□□□ -0.21
HDAC3-212ENST00000492407 SLC4A1APQ9BWU0 796 aaKnown RBP13.73□□□□□ -0.21
HDAC3-212ENST00000492407 PTCH1Q13635 1447 aa13.73□□□□□ -0.21
HDAC3-212ENST00000492407 CLTCL1P53675 1640 aa13.72□□□□□ -0.21
HDAC3-212ENST00000492407 ASXL1Q8IXJ9 1541 aa13.72□□□□□ -0.21
HDAC3-212ENST00000492407 SHPRHQ149N8 1683 aa13.72□□□□□ -0.21
HDAC3-212ENST00000492407 LRP6O75581 1613 aa13.71□□□□□ -0.22
HDAC3-212ENST00000492407 KIF1BO60333 1816 aa13.68□□□□□ -0.22
HDAC3-212ENST00000492407 RXRBP28702 533 aa13.67□□□□□ -0.22
HDAC3-212ENST00000492407 C1orf167Q5SNV9 1468 aa13.67□□□□□ -0.22
HDAC3-212ENST00000492407 ROBO2Q9HCK4 1378 aa13.66□□□□□ -0.22
HDAC3-212ENST00000492407 CDK12Q9NYV4 1490 aaPredicted RBP13.66□□□□□ -0.22
HDAC3-212ENST00000492407 NHSL1Q5SYE7 1610 aa13.65□□□□□ -0.22
HDAC3-212ENST00000492407 SOS2Q07890 1332 aaPredicted RBP13.64□□□□□ -0.23
HDAC3-212ENST00000492407 PNPLA6Q8IY17 1366 aa13.64□□□□□ -0.23
HDAC3-212ENST00000492407 ANKRD30BQ9BXX2 1392 aa13.64□□□□□ -0.23
HDAC3-212ENST00000492407 NUTM2BA6NNL0 878 aaPredicted RBP13.64□□□□□ -0.23
HDAC3-212ENST00000492407 NUTM2EB1AL46 878 aaPredicted RBP13.64□□□□□ -0.23
HDAC3-212ENST00000492407 NUTM2AQ8IVF1 878 aaPredicted RBP13.64□□□□□ -0.23
HDAC3-212ENST00000492407 CCDC144AA2RUR9 1427 aa13.64□□□□□ -0.23
HDAC3-212ENST00000492407 MPHOSPH9Q99550 1183 aa13.63□□□□□ -0.23
HDAC3-212ENST00000492407 LAMC1P11047 1609 aa13.63□□□□□ -0.23
HDAC3-212ENST00000492407 AFF2P51816 1311 aa13.63□□□□□ -0.23
HDAC3-212ENST00000492407 SIRT1Q96EB6 747 aa13.61□□□□□ -0.23
HDAC3-212ENST00000492407 TECPR2O15040 1411 aa13.61□□□□□ -0.23
HDAC3-212ENST00000492407 SPATA31E1Q6ZUB1 1445 aa13.61□□□□□ -0.23
HDAC3-212ENST00000492407 SETD1AO15047 1707 aaKnown RBP13.61□□□□□ -0.23
HDAC3-212ENST00000492407 NALCNQ8IZF0 1738 aa13.61□□□□□ -0.23
HDAC3-212ENST00000492407 ABCC11Q96J66 1382 aa13.6□□□□□ -0.23
HDAC3-212ENST00000492407 RBM6P78332 1123 aaKnown RBP13.6□□□□□ -0.23
HDAC3-212ENST00000492407 UPF1Q92900 1129 aaKnown RBP eCLIP13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms