RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 PRKD2Q9BZL6 878 aa8.87□□□□□ -0.99
VPS41-214ENST00000490924 GOLGA3Q08378 1498 aa8.87□□□□□ -0.99
VPS41-214ENST00000490924 BAZ1BQ9UIG0 1483 aaKnown RBP8.86□□□□□ -0.99
VPS41-214ENST00000490924 CEP164Q9UPV0 1460 aa8.85□□□□□ -0.99
VPS41-214ENST00000490924 KIF21BO75037 1637 aa8.85□□□□□ -0.99
VPS41-214ENST00000490924 TJAP1Q5JTD0 557 aa8.85□□□□□ -0.99
VPS41-214ENST00000490924 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.84□□□□□ -0.99
VPS41-214ENST00000490924 UNC13AQ9UPW8 1703 aa8.84□□□□□ -0.99
VPS41-214ENST00000490924 V9GY48 417 aaPredicted RBP8.84□□□□□ -0.99
VPS41-214ENST00000490924 BICRAQ9NZM4 1560 aa8.83□□□□□ -1
VPS41-214ENST00000490924 TRAF7Q6Q0C0 670 aa8.83□□□□□ -1
VPS41-214ENST00000490924 FAM9AQ8IZU1 332 aaPredicted RBP8.83□□□□□ -1
VPS41-214ENST00000490924 OSBPP22059 807 aa8.82□□□□□ -1
VPS41-214ENST00000490924 PPP1R18Q6NYC8 613 aa8.82□□□□□ -1
VPS41-214ENST00000490924 NRG2O14511 850 aaPredicted RBP8.81□□□□□ -1
VPS41-214ENST00000490924 SWT1Q5T5J6 900 aaKnown RBP8.8□□□□□ -1
VPS41-214ENST00000490924 FAM198AQ9UFP1 575 aa8.8□□□□□ -1
VPS41-214ENST00000490924 ABCC8Q09428 1581 aa8.8□□□□□ -1
VPS41-214ENST00000490924 PADI6Q6TGC4 694 aa8.79□□□□□ -1
VPS41-214ENST00000490924 CDHR5Q9HBB8 845 aa8.79□□□□□ -1
VPS41-214ENST00000490924 ATAD2BQ9ULI0 1458 aa8.78□□□□□ -1
VPS41-214ENST00000490924 COPS2P61201 443 aa8.78□□□□□ -1
VPS41-214ENST00000490924 TMUB1Q9BVT8 246 aa8.78□□□□□ -1
VPS41-214ENST00000490924 SOGA1O94964 1423 aa8.78□□□□□ -1
VPS41-214ENST00000490924 APLP1P51693 650 aa8.77□□□□□ -1.01
VPS41-214ENST00000490924 KMT5BQ4FZB7 885 aa8.77□□□□□ -1.01
VPS41-214ENST00000490924 RBM46Q8TBY0 533 aaKnown RBP8.77□□□□□ -1.01
VPS41-214ENST00000490924 PCDHB3Q9Y5E6 796 aa8.77□□□□□ -1.01
VPS41-214ENST00000490924 CLSPNQ9HAW4 1339 aa8.77□□□□□ -1.01
VPS41-214ENST00000490924 ZNF516Q92618 1163 aa8.76□□□□□ -1.01
VPS41-214ENST00000490924 PDZRN3Q9UPQ7 1066 aa8.76□□□□□ -1.01
VPS41-214ENST00000490924 VPS8Q8N3P4 1428 aa8.75□□□□□ -1.01
VPS41-214ENST00000490924 RSPH4AQ5TD94 716 aa8.75□□□□□ -1.01
VPS41-214ENST00000490924 CCER1Q8TC90 406 aaPredicted RBP8.75□□□□□ -1.01
VPS41-214ENST00000490924 ARHGEF1Q92888 912 aaKnown RBP8.75□□□□□ -1.01
VPS41-214ENST00000490924 ERICH3Q5RHP9 1530 aa8.75□□□□□ -1.01
VPS41-214ENST00000490924 DNAJB2P25686 324 aa8.74□□□□□ -1.01
VPS41-214ENST00000490924 ZPR1O75312 459 aa8.73□□□□□ -1.01
VPS41-214ENST00000490924 PRIM1P49642 420 aaKnown RBP8.73□□□□□ -1.01
VPS41-214ENST00000490924 HMGXB3Q12766 1538 aa8.73□□□□□ -1.01
VPS41-214ENST00000490924 TOP2BQ02880 1626 aa8.72□□□□□ -1.01
VPS41-214ENST00000490924 NUTM2FA1L443 756 aa8.72□□□□□ -1.01
VPS41-214ENST00000490924 SYNJ1O43426 1573 aa8.71□□□□□ -1.02
VPS41-214ENST00000490924 CENPBP07199 599 aaPredicted RBP8.71□□□□□ -1.02
VPS41-214ENST00000490924 P3H3Q8IVL6 736 aa8.71□□□□□ -1.02
VPS41-214ENST00000490924 TTC13Q8NBP0 860 aa8.71□□□□□ -1.02
VPS41-214ENST00000490924 CC2D2AQ9P2K1 1620 aa8.71□□□□□ -1.02
VPS41-214ENST00000490924 CLIP1P30622 1438 aa8.71□□□□□ -1.02
VPS41-214ENST00000490924 BIVM-ERCC5R4GMW8 1640 aa8.7□□□□□ -1.02
VPS41-214ENST00000490924 C3orf80F5H4A9 247 aa8.7□□□□□ -1.02
VPS41-214ENST00000490924 NKX2-3Q8TAU0 364 aa8.69□□□□□ -1.02
VPS41-214ENST00000490924 NCAPD3P42695 1498 aa8.69□□□□□ -1.02
VPS41-214ENST00000490924 SLC19A1P41440 591 aa8.68□□□□□ -1.02
VPS41-214ENST00000490924 ZNF787Q6DD87 383 aa8.68□□□□□ -1.02
VPS41-214ENST00000490924 EYA1Q99502 592 aa8.68□□□□□ -1.02
VPS41-214ENST00000490924 NPDC1Q9NQX5 325 aaPredicted RBP8.68□□□□□ -1.02
VPS41-214ENST00000490924 ACIN1Q9UKV3 1341 aaKnown RBP8.68□□□□□ -1.02
VPS41-214ENST00000490924 PRXQ9BXM0 1461 aa8.68□□□□□ -1.02
VPS41-214ENST00000490924 NR1I2O75469 434 aa8.67□□□□□ -1.02
VPS41-214ENST00000490924 PKDCCQ504Y2 493 aa8.67□□□□□ -1.02
VPS41-214ENST00000490924 RTN4Q9NQC3 1192 aaKnown RBP8.67□□□□□ -1.02
VPS41-214ENST00000490924 RUSC2Q8N2Y8 1516 aa8.66□□□□□ -1.02
VPS41-214ENST00000490924 UBTFP17480 764 aaKnown RBP8.66□□□□□ -1.02
VPS41-214ENST00000490924 DIEXFQ68CQ4 756 aaKnown RBP8.66□□□□□ -1.02
VPS41-214ENST00000490924 FCHSD2O94868 740 aa8.65□□□□□ -1.02
VPS41-214ENST00000490924 BLOC1S3Q6QNY0 202 aa8.65□□□□□ -1.02
VPS41-214ENST00000490924 OATP04181 439 aa8.64□□□□□ -1.03
VPS41-214ENST00000490924 MYT1Q01538 1121 aa8.64□□□□□ -1.03
VPS41-214ENST00000490924 SMYD5Q6GMV2 418 aa8.64□□□□□ -1.03
VPS41-214ENST00000490924 TMEM134Q9H6X4 195 aa8.64□□□□□ -1.03
VPS41-214ENST00000490924 CUX2O14529 1486 aa8.64□□□□□ -1.03
VPS41-214ENST00000490924 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.63□□□□□ -1.03
VPS41-214ENST00000490924 ACTN4O43707 911 aaKnown RBP8.63□□□□□ -1.03
VPS41-214ENST00000490924 CFHP08603 1231 aa8.63□□□□□ -1.03
VPS41-214ENST00000490924 MLLT3P42568 568 aaPredicted RBP8.63□□□□□ -1.03
VPS41-214ENST00000490924 PTGDRQ13258 359 aa8.63□□□□□ -1.03
VPS41-214ENST00000490924 ANKLE1Q8NAG6 615 aa8.63□□□□□ -1.03
VPS41-214ENST00000490924 MAP3K1Q13233 1512 aa8.63□□□□□ -1.03
VPS41-214ENST00000490924 RCCD1A6NED2 376 aa8.62□□□□□ -1.03
VPS41-214ENST00000490924 RNF223E7ERA6 249 aa8.61□□□□□ -1.03
VPS41-214ENST00000490924 ADGRG1Q9Y653 693 aa8.61□□□□□ -1.03
VPS41-214ENST00000490924 CFTRP13569 1480 aa8.61□□□□□ -1.03
VPS41-214ENST00000490924 RAPGEF2Q9Y4G8 1499 aa8.61□□□□□ -1.03
VPS41-214ENST00000490924 DGAT1O75907 488 aa8.6□□□□□ -1.03
VPS41-214ENST00000490924 ZNF598Q86UK7 904 aaKnown RBP8.6□□□□□ -1.03
VPS41-214ENST00000490924 KCNV2Q8TDN2 545 aa8.6□□□□□ -1.03
VPS41-214ENST00000490924 TSHZ2Q9NRE2 1034 aa8.6□□□□□ -1.03
VPS41-214ENST00000490924 KIF27Q86VH2 1401 aa8.6□□□□□ -1.03
VPS41-214ENST00000490924 RRBP1Q9P2E9 1410 aaKnown RBP8.6□□□□□ -1.03
VPS41-214ENST00000490924 ADH1BP00325 375 aa8.59□□□□□ -1.03
VPS41-214ENST00000490924 SLC6A16Q9GZN6 736 aa8.59□□□□□ -1.03
VPS41-214ENST00000490924 ZNF697Q5TEC3 545 aa8.58□□□□□ -1.04
VPS41-214ENST00000490924 SPRYD7Q5W111 196 aa8.58□□□□□ -1.04
VPS41-214ENST00000490924 TLL1O43897 1013 aa8.57□□□□□ -1.04
VPS41-214ENST00000490924 S1PR4O95977 384 aa8.57□□□□□ -1.04
VPS41-214ENST00000490924 FAM187AA6NFU0 413 aa8.56□□□□□ -1.04
VPS41-214ENST00000490924 HIC1Q14526 733 aa8.55□□□□□ -1.04
VPS41-214ENST00000490924 RDH13Q8NBN7 331 aa8.55□□□□□ -1.04
VPS41-214ENST00000490924 ARAP1Q96P48 1450 aa8.55□□□□□ -1.04
VPS41-214ENST00000490924 PRR20EP86478 221 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms