RNA–Protein interactions for RNA: ENST00000490035.6

LSAMP-205, Transcript of limbic system associated membrane protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSAMP, Length 9,446 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSAMP-205ENST00000490035 JPH4Q96JJ6 628 aa10.8□□□□□ -0.68
LSAMP-205ENST00000490035 ACBD3Q9H3P7 528 aa10.8□□□□□ -0.68
LSAMP-205ENST00000490035 TDRD9Q8NDG6 1382 aaKnown RBP10.8□□□□□ -0.68
LSAMP-205ENST00000490035 LETM1O95202 739 aaPredicted RBP10.8□□□□□ -0.68
LSAMP-205ENST00000490035 DDX49Q9Y6V7 483 aaKnown RBP10.8□□□□□ -0.68
LSAMP-205ENST00000490035 FRAT2O75474 233 aaPredicted RBP10.79□□□□□ -0.68
LSAMP-205ENST00000490035 NINLQ9Y2I6 1382 aa10.79□□□□□ -0.68
LSAMP-205ENST00000490035 DHX57Q6P158 1386 aaKnown RBP10.79□□□□□ -0.68
LSAMP-205ENST00000490035 TRDNQ13061 729 aa10.79□□□□□ -0.68
LSAMP-205ENST00000490035 HSP90AA2PQ14568 343 aaPredicted RBP10.79□□□□□ -0.68
LSAMP-205ENST00000490035 INTS3Q68E01 1043 aaKnown RBP10.79□□□□□ -0.68
LSAMP-205ENST00000490035 PDIA4P13667 645 aaKnown RBP10.79□□□□□ -0.68
LSAMP-205ENST00000490035 TEFQ10587 303 aa10.79□□□□□ -0.68
LSAMP-205ENST00000490035 ERC2O15083 957 aa10.78□□□□□ -0.68
LSAMP-205ENST00000490035 GTF2E1P29083 439 aaPredicted RBP10.78□□□□□ -0.68
LSAMP-205ENST00000490035 MCM2P49736 904 aa10.78□□□□□ -0.68
LSAMP-205ENST00000490035 GAPVD1Q14C86 1478 aa10.78□□□□□ -0.68
LSAMP-205ENST00000490035 HNRNPMP52272 730 aaKnown RBP eCLIP10.78□□□□□ -0.68
LSAMP-205ENST00000490035 NAT10Q9H0A0 1025 aaKnown RBP10.78□□□□□ -0.68
LSAMP-205ENST00000490035 PRKRIP1Q9H875 184 aaPredicted RBP10.78□□□□□ -0.68
LSAMP-205ENST00000490035 CHMP5Q9NZZ3 219 aa10.78□□□□□ -0.68
LSAMP-205ENST00000490035 ANKRD45Q5TZF3 282 aa10.77□□□□□ -0.68
LSAMP-205ENST00000490035 KIF7Q2M1P5 1343 aa10.77□□□□□ -0.68
LSAMP-205ENST00000490035 MAP7D2Q96T17 732 aa10.77□□□□□ -0.68
LSAMP-205ENST00000490035 PLEKHH2Q8IVE3 1493 aa10.77□□□□□ -0.69
LSAMP-205ENST00000490035 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.77□□□□□ -0.69
LSAMP-205ENST00000490035 HMGB2P26583 209 aaKnown RBP10.77□□□□□ -0.69
LSAMP-205ENST00000490035 PANK3Q9H999 370 aa10.77□□□□□ -0.69
LSAMP-205ENST00000490035 FOXD1Q16676 465 aa10.77□□□□□ -0.69
LSAMP-205ENST00000490035 RUNDC1Q96C34 613 aa10.77□□□□□ -0.69
LSAMP-205ENST00000490035 PTPRGP23470 1445 aa10.77□□□□□ -0.69
LSAMP-205ENST00000490035 PDE4AP27815 886 aa10.76□□□□□ -0.69
LSAMP-205ENST00000490035 TTC5Q8N0Z6 440 aa10.76□□□□□ -0.69
LSAMP-205ENST00000490035 C9orf78Q9NZ63 289 aaPredicted RBP10.76□□□□□ -0.69
LSAMP-205ENST00000490035 BRD4O60885 1362 aaPredicted RBP10.76□□□□□ -0.69
LSAMP-205ENST00000490035 ERICH2A1L162 156 aa10.76□□□□□ -0.69
LSAMP-205ENST00000490035 GNAI1P63096 354 aa10.76□□□□□ -0.69
LSAMP-205ENST00000490035 ST20-MTHFSA0A0A6YYL1 179 aa10.76□□□□□ -0.69
LSAMP-205ENST00000490035 ARGLU1Q9NWB6 273 aaPredicted RBP10.76□□□□□ -0.69
LSAMP-205ENST00000490035 HIP1O00291 1037 aa10.75□□□□□ -0.69
LSAMP-205ENST00000490035 CCDC7Q96M83 1385 aa10.75□□□□□ -0.69
LSAMP-205ENST00000490035 TCEAL9Q9UHQ7 104 aa10.75□□□□□ -0.69
LSAMP-205ENST00000490035 HECW1Q76N89 1606 aa10.75□□□□□ -0.69
LSAMP-205ENST00000490035 SENP3-EIF4A1A0A087X0R7 540 aa10.75□□□□□ -0.69
LSAMP-205ENST00000490035 SAFBQ15424 915 aaKnown RBP eCLIP10.75□□□□□ -0.69
LSAMP-205ENST00000490035 TSHZ2Q9NRE2 1034 aa10.75□□□□□ -0.69
LSAMP-205ENST00000490035 MYO6Q9UM54 1294 aa10.75□□□□□ -0.69
LSAMP-205ENST00000490035 RDXP35241 583 aaKnown RBP10.75□□□□□ -0.69
LSAMP-205ENST00000490035 RILPL2Q969X0 211 aa10.75□□□□□ -0.69
LSAMP-205ENST00000490035 CCP110O43303 1012 aa10.74□□□□□ -0.69
LSAMP-205ENST00000490035 XBP1P17861 261 aa10.74□□□□□ -0.69
LSAMP-205ENST00000490035 ZNF330Q9Y3S2 320 aaPredicted RBP10.74□□□□□ -0.69
LSAMP-205ENST00000490035 DIAPH1O60610 1272 aaKnown RBP10.74□□□□□ -0.69
LSAMP-205ENST00000490035 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.74□□□□□ -0.69
LSAMP-205ENST00000490035 NOM1Q5C9Z4 860 aaKnown RBP10.74□□□□□ -0.69
LSAMP-205ENST00000490035 TRIM34Q9BYJ4 488 aa10.74□□□□□ -0.69
LSAMP-205ENST00000490035 PSMA5P28066 241 aa10.74□□□□□ -0.69
LSAMP-205ENST00000490035 EHBP1L1Q8N3D4 1523 aa10.74□□□□□ -0.69
LSAMP-205ENST00000490035 DZIP1LQ8IYY4 767 aaKnown RBP10.74□□□□□ -0.69
LSAMP-205ENST00000490035 FGD6Q6ZV73 1430 aa10.74□□□□□ -0.69
LSAMP-205ENST00000490035 CPLX1O14810 134 aa10.73□□□□□ -0.69
LSAMP-205ENST00000490035 IFIT2P09913 472 aaKnown RBP10.73□□□□□ -0.69
LSAMP-205ENST00000490035 CT47B1P0C2W7 299 aaPredicted RBP10.73□□□□□ -0.69
LSAMP-205ENST00000490035 AK7Q96M32 723 aa10.73□□□□□ -0.69
LSAMP-205ENST00000490035 PDCP20941 246 aa10.73□□□□□ -0.69
LSAMP-205ENST00000490035 BRMS1Q9HCU9 246 aa10.73□□□□□ -0.69
LSAMP-205ENST00000490035 SASS6Q6UVJ0 657 aa10.73□□□□□ -0.69
LSAMP-205ENST00000490035 TOMM22Q9NS69 142 aa10.72□□□□□ -0.69
LSAMP-205ENST00000490035 CASKIN1Q8WXD9 1431 aa10.72□□□□□ -0.69
LSAMP-205ENST00000490035 LRRC9Q6ZRR7 1453 aa10.72□□□□□ -0.69
LSAMP-205ENST00000490035 HFM1A2PYH4 1435 aa10.72□□□□□ -0.69
LSAMP-205ENST00000490035 CCDC146Q8IYE0 955 aa10.72□□□□□ -0.69
LSAMP-205ENST00000490035 G3BP1Q13283 466 aaKnown RBP eCLIP10.72□□□□□ -0.69
LSAMP-205ENST00000490035 PES1O00541 588 aaKnown RBP10.71□□□□□ -0.69
LSAMP-205ENST00000490035 ERCC4Q92889 916 aaPredicted RBP10.71□□□□□ -0.69
LSAMP-205ENST00000490035 CLUAP1Q96AJ1 413 aa10.71□□□□□ -0.69
LSAMP-205ENST00000490035 TRAK1Q9UPV9 953 aa10.71□□□□□ -0.69
LSAMP-205ENST00000490035 EVA1CP58658 441 aa10.71□□□□□ -0.69
LSAMP-205ENST00000490035 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.71□□□□□ -0.7
LSAMP-205ENST00000490035 CCDC173Q0VFZ6 552 aa10.7□□□□□ -0.7
LSAMP-205ENST00000490035 MBD3O95983 291 aa10.7□□□□□ -0.7
LSAMP-205ENST00000490035 TXLNBQ8N3L3 684 aa10.7□□□□□ -0.7
LSAMP-205ENST00000490035 FGD5Q6ZNL6 1462 aa10.7□□□□□ -0.7
LSAMP-205ENST00000490035 PIP4K2AP48426 406 aaPredicted RBP10.7□□□□□ -0.7
LSAMP-205ENST00000490035 VPS53Q5VIR6 699 aa10.7□□□□□ -0.7
LSAMP-205ENST00000490035 SMC3Q9UQE7 1217 aa10.7□□□□□ -0.7
LSAMP-205ENST00000490035 RUFY1Q96T51 708 aa10.69□□□□□ -0.7
LSAMP-205ENST00000490035 CCDC73Q6ZRK6 1079 aa10.69□□□□□ -0.7
LSAMP-205ENST00000490035 CREBRFQ8IUR6 639 aa10.69□□□□□ -0.7
LSAMP-205ENST00000490035 DHX16O60231 1041 aaKnown RBP10.69□□□□□ -0.7
LSAMP-205ENST00000490035 CTDP1Q9Y5B0 961 aaPredicted RBP10.69□□□□□ -0.7
LSAMP-205ENST00000490035 CCDC9Q9Y3X0 531 aaKnown RBP10.69□□□□□ -0.7
LSAMP-205ENST00000490035 SYNJ2O15056 1496 aa10.69□□□□□ -0.7
LSAMP-205ENST00000490035 VPS37DQ86XT2 251 aa10.68□□□□□ -0.7
LSAMP-205ENST00000490035 SMG6Q86US8 1419 aaKnown RBP10.68□□□□□ -0.7
LSAMP-205ENST00000490035 OLFM4Q6UX06 510 aa10.68□□□□□ -0.7
LSAMP-205ENST00000490035 ERC1Q8IUD2 1116 aa10.68□□□□□ -0.7
LSAMP-205ENST00000490035 DCTN1Q14203 1278 aa10.68□□□□□ -0.7
LSAMP-205ENST00000490035 PRM3Q9NNZ6 103 aa10.68□□□□□ -0.7
LSAMP-205ENST00000490035 MCTP1Q6DN14 999 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms