RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 SLC52A1Q9NWF4 448 aa21.85■■□□□ 1.09
VARS-227ENST00000489979 MSH6P52701 1360 aa21.83■■□□□ 1.08
VARS-227ENST00000489979 MYO5BQ9ULV0 1848 aa21.8■■□□□ 1.08
VARS-227ENST00000489979 ADGRL2O95490 1459 aa21.79■■□□□ 1.08
VARS-227ENST00000489979 SLAIN2Q9P270 581 aa21.79■■□□□ 1.08
VARS-227ENST00000489979 PHLPP1O60346 1717 aa21.79■■□□□ 1.08
VARS-227ENST00000489979 CHD2O14647 1828 aaKnown RBP21.78■■□□□ 1.08
VARS-227ENST00000489979 ZFYVE9O95405 1425 aa21.78■■□□□ 1.08
VARS-227ENST00000489979 RPRD2Q5VT52 1461 aaKnown RBP21.77■■□□□ 1.08
VARS-227ENST00000489979 PLEKHG1Q9ULL1 1385 aa21.76■■□□□ 1.07
VARS-227ENST00000489979 PPP1R15AO75807 674 aaPredicted RBP21.76■■□□□ 1.07
VARS-227ENST00000489979 RIMS2Q9UQ26 1411 aa21.76■■□□□ 1.07
VARS-227ENST00000489979 GCC2Q8IWJ2 1684 aa21.75■■□□□ 1.07
VARS-227ENST00000489979 JCADQ9P266 1359 aa21.75■■□□□ 1.07
VARS-227ENST00000489979 ANKRD50Q9ULJ7 1429 aa21.75■■□□□ 1.07
VARS-227ENST00000489979 FAM50AQ14320 339 aaKnown RBP21.74■■□□□ 1.07
VARS-227ENST00000489979 SETD1AO15047 1707 aaKnown RBP21.73■■□□□ 1.07
VARS-227ENST00000489979 HDGFP51858 240 aaKnown RBP21.73■■□□□ 1.07
VARS-227ENST00000489979 TMEM131LA2VDJ0 1609 aa21.73■■□□□ 1.07
VARS-227ENST00000489979 TBX22Q9Y458 520 aa21.71■■□□□ 1.07
VARS-227ENST00000489979 COL16A1Q07092 1604 aaPredicted RBP21.7■■□□□ 1.06
VARS-227ENST00000489979 CHGAP10645 457 aaKnown RBP21.69■■□□□ 1.06
VARS-227ENST00000489979 C14orf37Q86TY3 774 aa21.68■■□□□ 1.06
VARS-227ENST00000489979 NCOA3Q9Y6Q9 1424 aa21.68■■□□□ 1.06
VARS-227ENST00000489979 NUTM2DQ5VT03 806 aaPredicted RBP21.67■■□□□ 1.06
VARS-227ENST00000489979 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.67■■□□□ 1.06
VARS-227ENST00000489979 ADAMTS13Q76LX8 1427 aa21.65■■□□□ 1.06
VARS-227ENST00000489979 LRP6O75581 1613 aa21.65■■□□□ 1.06
VARS-227ENST00000489979 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.64■■□□□ 1.06
VARS-227ENST00000489979 UNC13BO14795 1591 aa21.64■■□□□ 1.05
VARS-227ENST00000489979 E9PCH4 1651 aa21.63■■□□□ 1.05
VARS-227ENST00000489979 SPATA31A6Q5VVP1 1343 aa21.63■■□□□ 1.05
VARS-227ENST00000489979 CADPS2Q86UW7 1296 aa21.63■■□□□ 1.05
VARS-227ENST00000489979 DIP2AQ14689 1571 aa21.62■■□□□ 1.05
VARS-227ENST00000489979 ATF3P18847 181 aa21.62■■□□□ 1.05
VARS-227ENST00000489979 MEX3CQ5U5Q3 659 aaKnown RBP21.62■■□□□ 1.05
VARS-227ENST00000489979 C19orf44Q9H6X5 657 aa21.62■■□□□ 1.05
VARS-227ENST00000489979 AHDC1Q5TGY3 1603 aaPredicted RBP21.61■■□□□ 1.05
VARS-227ENST00000489979 PIK3R4Q99570 1358 aa21.61■■□□□ 1.05
VARS-227ENST00000489979 ZNF772Q68DY9 489 aaPredicted RBP21.59■■□□□ 1.05
VARS-227ENST00000489979 SHPRHQ149N8 1683 aa21.59■■□□□ 1.05
VARS-227ENST00000489979 TRIM52Q96A61 297 aa21.57■■□□□ 1.04
VARS-227ENST00000489979 AMOTL2Q9Y2J4 779 aa21.57■■□□□ 1.04
VARS-227ENST00000489979 TRPM2O94759 1503 aa21.56■■□□□ 1.04
VARS-227ENST00000489979 IQGAP3Q86VI3 1631 aa21.56■■□□□ 1.04
VARS-227ENST00000489979 PTPRUQ92729 1446 aa21.55■■□□□ 1.04
VARS-227ENST00000489979 BRINP3Q76B58 766 aa21.55■■□□□ 1.04
VARS-227ENST00000489979 UPF1Q92900 1129 aaKnown RBP eCLIP21.54■■□□□ 1.04
VARS-227ENST00000489979 ROCK1Q13464 1354 aa21.53■■□□□ 1.04
VARS-227ENST00000489979 NUTM2BA6NNL0 878 aaPredicted RBP21.52■■□□□ 1.04
VARS-227ENST00000489979 NUTM2EB1AL46 878 aaPredicted RBP21.52■■□□□ 1.04
VARS-227ENST00000489979 NUTM2AQ8IVF1 878 aaPredicted RBP21.52■■□□□ 1.04
VARS-227ENST00000489979 NUP155O75694 1391 aa21.51■■□□□ 1.03
VARS-227ENST00000489979 RXRBP28702 533 aa21.5■■□□□ 1.03
VARS-227ENST00000489979 NRXN3Q9Y4C0 1643 aa21.48■■□□□ 1.03
VARS-227ENST00000489979 DCCP43146 1447 aa21.48■■□□□ 1.03
VARS-227ENST00000489979 XRN1Q8IZH2 1706 aaKnown RBP21.48■■□□□ 1.03
VARS-227ENST00000489979 ASXL1Q8IXJ9 1541 aa21.48■■□□□ 1.03
VARS-227ENST00000489979 SETBP1Q9Y6X0 1596 aa21.46■■□□□ 1.03
VARS-227ENST00000489979 MST1RQ04912 1400 aa21.46■■□□□ 1.03
VARS-227ENST00000489979 AFF2P51816 1311 aa21.45■■□□□ 1.02
VARS-227ENST00000489979 SETD5Q9C0A6 1442 aa21.45■■□□□ 1.02
VARS-227ENST00000489979 NHSL1Q5SYE7 1610 aa21.44■■□□□ 1.02
VARS-227ENST00000489979 ITGAEP38570 1179 aa21.44■■□□□ 1.02
VARS-227ENST00000489979 ZNF326Q5BKZ1 582 aaKnown RBP21.44■■□□□ 1.02
VARS-227ENST00000489979 SPHKAPQ2M3C7 1700 aa21.43■■□□□ 1.02
VARS-227ENST00000489979 METP08581 1390 aa21.43■■□□□ 1.02
VARS-227ENST00000489979 CDK12Q9NYV4 1490 aaPredicted RBP21.43■■□□□ 1.02
VARS-227ENST00000489979 LRRC59Q96AG4 307 aaKnown RBP21.41■■□□□ 1.02
VARS-227ENST00000489979 DDX17Q92841 729 aaKnown RBP21.4■■□□□ 1.02
VARS-227ENST00000489979 ADGRL3Q9HAR2 1447 aa21.38■■□□□ 1.01
VARS-227ENST00000489979 C8orf37Q96NL8 207 aa21.38■■□□□ 1.01
VARS-227ENST00000489979 PNPLA6Q8IY17 1366 aa21.36■■□□□ 1.01
VARS-227ENST00000489979 NALCNQ8IZF0 1738 aa21.36■■□□□ 1.01
VARS-227ENST00000489979 QTRT2Q9H974 415 aaKnown RBP21.36■■□□□ 1.01
VARS-227ENST00000489979 NEXMIFQ5QGS0 1516 aa21.34■■□□□ 1.01
VARS-227ENST00000489979 RGS12O14924 1447 aa21.34■■□□□ 1.01
VARS-227ENST00000489979 CLTCL1P53675 1640 aa21.33■■□□□ 1.01
VARS-227ENST00000489979 RBM6P78332 1123 aaKnown RBP21.33■■□□□ 1.01
VARS-227ENST00000489979 C1orf167Q5SNV9 1468 aa21.31■■□□□ 1
VARS-227ENST00000489979 ADAMTS2O95450 1211 aa21.3■■□□□ 1
VARS-227ENST00000489979 KIF1BO60333 1816 aa21.29■■□□□ 1
VARS-227ENST00000489979 PPARGC1BQ86YN6 1023 aaKnown RBP21.29■■□□□ 1
VARS-227ENST00000489979 NGLY1Q96IV0 654 aa21.29■■□□□ 1
VARS-227ENST00000489979 LAMC1P11047 1609 aa21.26■□□□□ 0.99
VARS-227ENST00000489979 PTCH1Q13635 1447 aa21.26■□□□□ 0.99
VARS-227ENST00000489979 ROBO2Q9HCK4 1378 aa21.25■□□□□ 0.99
VARS-227ENST00000489979 ORAI2Q96SN7 254 aa21.25■□□□□ 0.99
VARS-227ENST00000489979 SOS2Q07890 1332 aaPredicted RBP21.25■□□□□ 0.99
VARS-227ENST00000489979 VGFO15240 615 aaPredicted RBP21.22■□□□□ 0.99
VARS-227ENST00000489979 USP21Q9UK80 565 aa21.22■□□□□ 0.99
VARS-227ENST00000489979 ATAD2Q6PL18 1390 aa21.2■□□□□ 0.98
VARS-227ENST00000489979 TRPC5Q9UL62 973 aaPredicted RBP21.19■□□□□ 0.98
VARS-227ENST00000489979 FNBP4Q8N3X1 1017 aaPredicted RBP21.18■□□□□ 0.98
VARS-227ENST00000489979 NAIPQ13075 1403 aa21.18■□□□□ 0.98
VARS-227ENST00000489979 PRAG1Q86YV5 1406 aa21.17■□□□□ 0.98
VARS-227ENST00000489979 SRCAPQ6ZRS2 3230 aa21.17■□□□□ 0.98
VARS-227ENST00000489979 COL22A1Q8NFW1 1626 aaPredicted RBP21.16■□□□□ 0.98
VARS-227ENST00000489979 HFM1A2PYH4 1435 aa21.16■□□□□ 0.98
VARS-227ENST00000489979 RPGRIP1LQ68CZ1 1315 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms