RNA–Protein interactions for RNA: ENST00000488833.1

ATG9A-222, Transcript of autophagy related 9A, human

TSL 2

Gene ATG9A, Length 487 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATG9A-222	ENST00000488833	NUP155	O75694	1391 aa		27.96	■■■□□ 2.07
ATG9A-222	ENST00000488833	RIMS2	Q9UQ26	1411 aa		27.95	■■■□□ 2.07
ATG9A-222	ENST00000488833	BCAN	Q96GW7	911 aa		27.95	■■■□□ 2.06
ATG9A-222	ENST00000488833	MED1	Q15648	1581 aa	Predicted RBP	27.94	■■■□□ 2.06
ATG9A-222	ENST00000488833	KCNA6	P17658	529 aa		27.93	■■■□□ 2.06
ATG9A-222	ENST00000488833	NWD1	Q149M9	1564 aa		27.92	■■■□□ 2.06
ATG9A-222	ENST00000488833	PPP1R15A	O75807	674 aa	Predicted RBP	27.92	■■■□□ 2.06
ATG9A-222	ENST00000488833	CHGA	P10645	457 aa	Known RBP	27.92	■■■□□ 2.06
ATG9A-222	ENST00000488833	SENP3	Q9H4L4	574 aa	Predicted RBP	27.92	■■■□□ 2.06
ATG9A-222	ENST00000488833	TMEM94	Q12767	1356 aa		27.91	■■■□□ 2.06
ATG9A-222	ENST00000488833	PLEKHG1	Q9ULL1	1385 aa		27.91	■■■□□ 2.06
ATG9A-222	ENST00000488833	NKTR	P30414	1462 aa	Known RBP	27.89	■■■□□ 2.06
ATG9A-222	ENST00000488833	HDGF	P51858	240 aa	Known RBP	27.88	■■■□□ 2.05
ATG9A-222	ENST00000488833	RRBP1	Q9P2E9	1410 aa	Known RBP	27.88	■■■□□ 2.05
ATG9A-222	ENST00000488833	PROSER2	Q86WR7	435 aa	Predicted RBP	27.87	■■■□□ 2.05
ATG9A-222	ENST00000488833	SOCS7	O14512	581 aa		27.86	■■■□□ 2.05
ATG9A-222	ENST00000488833	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	27.84	■■■□□ 2.05
ATG9A-222	ENST00000488833	SPHKAP	Q2M3C7	1700 aa		27.82	■■■□□ 2.04
ATG9A-222	ENST00000488833	RBM33	Q96EV2	1170 aa	Known RBP	27.82	■■■□□ 2.04
ATG9A-222	ENST00000488833	CHD2	O14647	1828 aa	Known RBP	27.82	■■■□□ 2.04
ATG9A-222	ENST00000488833	NUTM2D	Q5VT03	806 aa	Predicted RBP	27.8	■■■□□ 2.04
ATG9A-222	ENST00000488833	DIP2A	Q14689	1571 aa		27.77	■■■□□ 2.04
ATG9A-222	ENST00000488833	NAIP	Q13075	1403 aa		27.76	■■■□□ 2.04
ATG9A-222	ENST00000488833	FAM135B	Q49AJ0	1406 aa		27.76	■■■□□ 2.04
ATG9A-222	ENST00000488833	ADAMTS13	Q76LX8	1427 aa		27.76	■■■□□ 2.04
ATG9A-222	ENST00000488833	TBX22	Q9Y458	520 aa		27.76	■■■□□ 2.03
ATG9A-222	ENST00000488833	MSH6	P52701	1360 aa		27.75	■■■□□ 2.03
ATG9A-222	ENST00000488833	ROBO1	Q9Y6N7	1651 aa		27.75	■■■□□ 2.03
ATG9A-222	ENST00000488833	PHF23	Q9BUL5	403 aa	Predicted RBP	27.73	■■■□□ 2.03
ATG9A-222	ENST00000488833	TRPM2	O94759	1503 aa		27.7	■■■□□ 2.02
ATG9A-222	ENST00000488833	CLTCL1	P53675	1640 aa		27.68	■■■□□ 2.02
ATG9A-222	ENST00000488833	PIK3R4	Q99570	1358 aa		27.68	■■■□□ 2.02
ATG9A-222	ENST00000488833	HFM1	A2PYH4	1435 aa		27.67	■■■□□ 2.02
ATG9A-222	ENST00000488833	ZNF326	Q5BKZ1	582 aa	Known RBP	27.66	■■■□□ 2.02
ATG9A-222	ENST00000488833	NRXN3	Q9Y4C0	1643 aa		27.65	■■■□□ 2.02
ATG9A-222	ENST00000488833	C14orf37	Q86TY3	774 aa		27.64	■■■□□ 2.02
ATG9A-222	ENST00000488833	NCOA3	Q9Y6Q9	1424 aa		27.64	■■■□□ 2.02
ATG9A-222	ENST00000488833	SETBP1	Q9Y6X0	1596 aa		27.63	■■■□□ 2.01
ATG9A-222	ENST00000488833	TRIM52	Q96A61	297 aa		27.62	■■■□□ 2.01
ATG9A-222	ENST00000488833	SLAIN2	Q9P270	581 aa		27.62	■■■□□ 2.01
ATG9A-222	ENST00000488833	KIF1B	O60333	1816 aa		27.61	■■■□□ 2.01
ATG9A-222	ENST00000488833	PTPRU	Q92729	1446 aa		27.6	■■■□□ 2.01
ATG9A-222	ENST00000488833	NEXMIF	Q5QGS0	1516 aa		27.59	■■■□□ 2.01
ATG9A-222	ENST00000488833	PHLPP1	O60346	1717 aa		27.58	■■■□□ 2.01
ATG9A-222	ENST00000488833	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	27.58	■■■□□ 2.01
ATG9A-222	ENST00000488833	AMOTL2	Q9Y2J4	779 aa		27.58	■■■□□ 2.01
ATG9A-222	ENST00000488833	XRN1	Q8IZH2	1706 aa	Known RBP	27.58	■■■□□ 2.01
ATG9A-222	ENST00000488833	SLC4A1AP	Q9BWU0	796 aa	Known RBP	27.53	■■■□□ 2
ATG9A-222	ENST00000488833	C19orf44	Q9H6X5	657 aa		27.53	■■■□□ 2
ATG9A-222	ENST00000488833	ATF3	P18847	181 aa		27.52	■■■□□ 2
ATG9A-222	ENST00000488833	CADPS2	Q86UW7	1296 aa		27.52	■■■□□ 2
ATG9A-222	ENST00000488833	MET	P08581	1390 aa		27.5	■■□□□ 1.99
ATG9A-222	ENST00000488833	COL16A1	Q07092	1604 aa	Predicted RBP	27.49	■■□□□ 1.99
ATG9A-222	ENST00000488833	JCAD	Q9P266	1359 aa		27.47	■■□□□ 1.99
ATG9A-222	ENST00000488833	RGS17	Q9UGC6	210 aa	Predicted RBP	27.46	■■□□□ 1.99
ATG9A-222	ENST00000488833	DCC	P43146	1447 aa		27.46	■■□□□ 1.99
ATG9A-222	ENST00000488833	AHDC1	Q5TGY3	1603 aa	Predicted RBP	27.45	■■□□□ 1.98
ATG9A-222	ENST00000488833	PPL	O60437	1756 aa		27.41	■■□□□ 1.98
ATG9A-222	ENST00000488833	SETD1A	O15047	1707 aa	Known RBP	27.41	■■□□□ 1.98
ATG9A-222	ENST00000488833	VGF	O15240	615 aa	Predicted RBP	27.4	■■□□□ 1.98
ATG9A-222	ENST00000488833	FOXD1	Q16676	465 aa		27.4	■■□□□ 1.98
ATG9A-222	ENST00000488833	ADGRL3	Q9HAR2	1447 aa		27.4	■■□□□ 1.98
ATG9A-222	ENST00000488833	RPGRIP1L	Q68CZ1	1315 aa		27.4	■■□□□ 1.98
ATG9A-222	ENST00000488833	NALCN	Q8IZF0	1738 aa		27.38	■■□□□ 1.97
ATG9A-222	ENST00000488833	BRINP3	Q76B58	766 aa		27.38	■■□□□ 1.97
ATG9A-222	ENST00000488833	MST1R	Q04912	1400 aa		27.37	■■□□□ 1.97
ATG9A-222	ENST00000488833	ASXL1	Q8IXJ9	1541 aa		27.36	■■□□□ 1.97
ATG9A-222	ENST00000488833	CCDC144A	A2RUR9	1427 aa		27.34	■■□□□ 1.97
ATG9A-222	ENST00000488833	PTCH1	Q13635	1447 aa		27.34	■■□□□ 1.97
ATG9A-222	ENST00000488833	SHPRH	Q149N8	1683 aa		27.34	■■□□□ 1.97
ATG9A-222	ENST00000488833	POTEA	Q6S8J7	498 aa		27.33	■■□□□ 1.97
ATG9A-222	ENST00000488833	LRP6	O75581	1613 aa		27.31	■■□□□ 1.96
ATG9A-222	ENST00000488833	SPATA31A6	Q5VVP1	1343 aa		27.31	■■□□□ 1.96
ATG9A-222	ENST00000488833	NHSL1	Q5SYE7	1610 aa		27.3	■■□□□ 1.96
ATG9A-222	ENST00000488833	MPHOSPH9	Q99550	1183 aa		27.3	■■□□□ 1.96
ATG9A-222	ENST00000488833	ROBO2	Q9HCK4	1378 aa		27.29	■■□□□ 1.96
ATG9A-222	ENST00000488833	PRAG1	Q86YV5	1406 aa		27.28	■■□□□ 1.96
ATG9A-222	ENST00000488833	SPATA31E1	Q6ZUB1	1445 aa		27.26	■■□□□ 1.95
ATG9A-222	ENST00000488833	MEX3C	Q5U5Q3	659 aa	Known RBP	27.26	■■□□□ 1.95
ATG9A-222	ENST00000488833	IFT172	Q9UG01	1749 aa		27.25	■■□□□ 1.95
ATG9A-222	ENST00000488833	RGL3	Q3MIN7	710 aa		27.24	■■□□□ 1.95
ATG9A-222	ENST00000488833	SETD5	Q9C0A6	1442 aa		27.24	■■□□□ 1.95
ATG9A-222	ENST00000488833	ADGRF5	Q8IZF2	1346 aa		27.23	■■□□□ 1.95
ATG9A-222	ENST00000488833	C1orf167	Q5SNV9	1468 aa		27.23	■■□□□ 1.95
ATG9A-222	ENST00000488833	ANKRD30B	Q9BXX2	1392 aa		27.22	■■□□□ 1.95
ATG9A-222	ENST00000488833	DDX17	Q92841	729 aa	Known RBP	27.2	■■□□□ 1.94
ATG9A-222	ENST00000488833	ACIN1	Q9UKV3	1341 aa	Known RBP	27.19	■■□□□ 1.94
ATG9A-222	ENST00000488833	NUTM2B	A6NNL0	878 aa	Predicted RBP	27.18	■■□□□ 1.94
ATG9A-222	ENST00000488833	NUTM2E	B1AL46	878 aa	Predicted RBP	27.18	■■□□□ 1.94
ATG9A-222	ENST00000488833	NUTM2A	Q8IVF1	878 aa	Predicted RBP	27.18	■■□□□ 1.94
ATG9A-222	ENST00000488833	LRRC59	Q96AG4	307 aa	Known RBP	27.16	■■□□□ 1.94
ATG9A-222	ENST00000488833	CDC42BPG	Q6DT37	1551 aa		27.14	■■□□□ 1.94
ATG9A-222	ENST00000488833	RAB3GAP2	Q9H2M9	1393 aa		27.14	■■□□□ 1.94
ATG9A-222	ENST00000488833	ZNF772	Q68DY9	489 aa	Predicted RBP	27.14	■■□□□ 1.94
ATG9A-222	ENST00000488833	LAMC1	P11047	1609 aa		27.14	■■□□□ 1.94
ATG9A-222	ENST00000488833	PIK3C2G	O75747	1445 aa		27.14	■■□□□ 1.93
ATG9A-222	ENST00000488833	PNPLA6	Q8IY17	1366 aa		27.13	■■□□□ 1.93
ATG9A-222	ENST00000488833	ORAI2	Q96SN7	254 aa		27.12	■■□□□ 1.93
ATG9A-222	ENST00000488833	STK26	Q9P289	416 aa		27.12	■■□□□ 1.93
ATG9A-222	ENST00000488833	TECPR2	O15040	1411 aa		27.12	■■□□□ 1.93

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