RNA–Protein interactions for RNA: ENST00000488186.5

C9orf3-219, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,211 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-219ENST00000488186 ZFYVE9O95405 1425 aa22.98■■□□□ 1.27
C9orf3-219ENST00000488186 PPP1R15AO75807 674 aaPredicted RBP22.96■■□□□ 1.27
C9orf3-219ENST00000488186 KIF1BO60333 1816 aa22.95■■□□□ 1.26
C9orf3-219ENST00000488186 CLTCL1P53675 1640 aa22.95■■□□□ 1.26
C9orf3-219ENST00000488186 LTBP4Q8N2S1 1624 aa22.95■■□□□ 1.26
C9orf3-219ENST00000488186 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.95■■□□□ 1.26
C9orf3-219ENST00000488186 ANKRD30BQ9BXX2 1392 aa22.94■■□□□ 1.26
C9orf3-219ENST00000488186 BCANQ96GW7 911 aa22.94■■□□□ 1.26
C9orf3-219ENST00000488186 RGL3Q3MIN7 710 aa22.93■■□□□ 1.26
C9orf3-219ENST00000488186 RIMS2Q9UQ26 1411 aa22.91■■□□□ 1.26
C9orf3-219ENST00000488186 IQSEC2Q5JU85 1478 aa22.91■■□□□ 1.26
C9orf3-219ENST00000488186 DHX57Q6P158 1386 aaKnown RBP22.9■■□□□ 1.26
C9orf3-219ENST00000488186 NUTM2DQ5VT03 806 aaPredicted RBP22.9■■□□□ 1.26
C9orf3-219ENST00000488186 PLEKHG1Q9ULL1 1385 aa22.89■■□□□ 1.26
C9orf3-219ENST00000488186 CERKQ8TCT0 537 aa22.89■■□□□ 1.25
C9orf3-219ENST00000488186 RPGRIP1LQ68CZ1 1315 aa22.87■■□□□ 1.25
C9orf3-219ENST00000488186 CPS1P31327 1500 aa22.87■■□□□ 1.25
C9orf3-219ENST00000488186 SENP3Q9H4L4 574 aaPredicted RBP22.86■■□□□ 1.25
C9orf3-219ENST00000488186 ZNF335Q9H4Z2 1342 aaPredicted RBP22.85■■□□□ 1.25
C9orf3-219ENST00000488186 VGFO15240 615 aaPredicted RBP22.84■■□□□ 1.25
C9orf3-219ENST00000488186 NEUROD1Q13562 356 aa22.83■■□□□ 1.25
C9orf3-219ENST00000488186 TBX22Q9Y458 520 aa22.82■■□□□ 1.24
C9orf3-219ENST00000488186 NEXMIFQ5QGS0 1516 aa22.81■■□□□ 1.24
C9orf3-219ENST00000488186 DIP2AQ14689 1571 aa22.8■■□□□ 1.24
C9orf3-219ENST00000488186 SIN3AQ96ST3 1273 aa22.8■■□□□ 1.24
C9orf3-219ENST00000488186 SPATA31E1Q6ZUB1 1445 aa22.8■■□□□ 1.24
C9orf3-219ENST00000488186 PIK3R4Q99570 1358 aa22.78■■□□□ 1.24
C9orf3-219ENST00000488186 CCER1Q8TC90 406 aaPredicted RBP22.78■■□□□ 1.24
C9orf3-219ENST00000488186 FBXO41Q8TF61 875 aa22.78■■□□□ 1.24
C9orf3-219ENST00000488186 SLC26A8Q96RN1 970 aa22.78■■□□□ 1.24
C9orf3-219ENST00000488186 SETBP1Q9Y6X0 1596 aa22.78■■□□□ 1.24
C9orf3-219ENST00000488186 STRCP1A6NGW2 1772 aa22.76■■□□□ 1.23
C9orf3-219ENST00000488186 ADAMTS13Q76LX8 1427 aa22.76■■□□□ 1.23
C9orf3-219ENST00000488186 KDM2AQ9Y2K7 1162 aa22.76■■□□□ 1.23
C9orf3-219ENST00000488186 PPLO60437 1756 aa22.76■■□□□ 1.23
C9orf3-219ENST00000488186 KCNA6P17658 529 aa22.75■■□□□ 1.23
C9orf3-219ENST00000488186 DCAF11Q8TEB1 546 aa22.75■■□□□ 1.23
C9orf3-219ENST00000488186 CHD2O14647 1828 aaKnown RBP22.75■■□□□ 1.23
C9orf3-219ENST00000488186 NWD1Q149M9 1564 aa22.73■■□□□ 1.23
C9orf3-219ENST00000488186 NRXN3Q9Y4C0 1643 aa22.71■■□□□ 1.23
C9orf3-219ENST00000488186 IFT172Q9UG01 1749 aa22.71■■□□□ 1.23
C9orf3-219ENST00000488186 STAC3Q96MF2 364 aa22.71■■□□□ 1.23
C9orf3-219ENST00000488186 NKTRP30414 1462 aaKnown RBP22.71■■□□□ 1.23
C9orf3-219ENST00000488186 LRRC7Q96NW7 1537 aa22.7■■□□□ 1.22
C9orf3-219ENST00000488186 ADGRF5Q8IZF2 1346 aa22.69■■□□□ 1.22
C9orf3-219ENST00000488186 CLSPNQ9HAW4 1339 aa22.67■■□□□ 1.22
C9orf3-219ENST00000488186 NCOA3Q9Y6Q9 1424 aa22.65■■□□□ 1.22
C9orf3-219ENST00000488186 L3MBTL2Q969R5 705 aa22.65■■□□□ 1.22
C9orf3-219ENST00000488186 TONSLQ96HA7 1378 aa22.64■■□□□ 1.22
C9orf3-219ENST00000488186 ILDR1Q86SU0 546 aaPredicted RBP22.63■■□□□ 1.21
C9orf3-219ENST00000488186 SETD1AO15047 1707 aaKnown RBP22.62■■□□□ 1.21
C9orf3-219ENST00000488186 XIRP1Q702N8 1843 aaKnown RBP22.62■■□□□ 1.21
C9orf3-219ENST00000488186 MYOM2P54296 1465 aa22.62■■□□□ 1.21
C9orf3-219ENST00000488186 ALKQ9UM73 1620 aa22.6■■□□□ 1.21
C9orf3-219ENST00000488186 NRXN1Q9ULB1 1477 aa22.6■■□□□ 1.21
C9orf3-219ENST00000488186 PRAG1Q86YV5 1406 aa22.6■■□□□ 1.21
C9orf3-219ENST00000488186 XRN1Q8IZH2 1706 aaKnown RBP22.59■■□□□ 1.21
C9orf3-219ENST00000488186 PIK3C2GO75747 1445 aa22.58■■□□□ 1.21
C9orf3-219ENST00000488186 TOM1O60784 492 aa22.58■■□□□ 1.21
C9orf3-219ENST00000488186 PROSER2Q86WR7 435 aaPredicted RBP22.58■■□□□ 1.21
C9orf3-219ENST00000488186 AMOTL2Q9Y2J4 779 aa22.58■■□□□ 1.21
C9orf3-219ENST00000488186 METP08581 1390 aa22.58■■□□□ 1.21
C9orf3-219ENST00000488186 PTPRUQ92729 1446 aa22.57■■□□□ 1.2
C9orf3-219ENST00000488186 CFAP70Q5T0N1 1121 aa22.57■■□□□ 1.2
C9orf3-219ENST00000488186 C14orf93Q9H972 538 aaKnown RBP22.57■■□□□ 1.2
C9orf3-219ENST00000488186 TMEM94Q12767 1356 aa22.57■■□□□ 1.2
C9orf3-219ENST00000488186 LAMC1P11047 1609 aa22.53■■□□□ 1.2
C9orf3-219ENST00000488186 UBAP1LF5GYI3 381 aa22.53■■□□□ 1.2
C9orf3-219ENST00000488186 TMEM132EQ6IEE7 984 aa22.53■■□□□ 1.2
C9orf3-219ENST00000488186 STK26Q9P289 416 aa22.53■■□□□ 1.2
C9orf3-219ENST00000488186 TIMELESSQ9UNS1 1208 aa22.52■■□□□ 1.2
C9orf3-219ENST00000488186 PTCH1Q13635 1447 aa22.5■■□□□ 1.19
C9orf3-219ENST00000488186 C14orf37Q86TY3 774 aa22.5■■□□□ 1.19
C9orf3-219ENST00000488186 MSH6P52701 1360 aa22.48■■□□□ 1.19
C9orf3-219ENST00000488186 TECPR2O15040 1411 aa22.48■■□□□ 1.19
C9orf3-219ENST00000488186 RBM33Q96EV2 1170 aaKnown RBP22.47■■□□□ 1.19
C9orf3-219ENST00000488186 C19orf44Q9H6X5 657 aa22.47■■□□□ 1.19
C9orf3-219ENST00000488186 ABCC11Q96J66 1382 aa22.47■■□□□ 1.19
C9orf3-219ENST00000488186 DCCP43146 1447 aa22.46■■□□□ 1.19
C9orf3-219ENST00000488186 SIRT1Q96EB6 747 aa22.45■■□□□ 1.18
C9orf3-219ENST00000488186 LRPPRCP42704 1394 aaKnown RBP22.45■■□□□ 1.18
C9orf3-219ENST00000488186 KNDC1Q76NI1 1749 aa22.44■■□□□ 1.18
C9orf3-219ENST00000488186 YTHDC2Q9H6S0 1430 aaKnown RBP22.43■■□□□ 1.18
C9orf3-219ENST00000488186 ASXL1Q8IXJ9 1541 aa22.42■■□□□ 1.18
C9orf3-219ENST00000488186 TRAK1Q9UPV9 953 aa22.42■■□□□ 1.18
C9orf3-219ENST00000488186 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.42■■□□□ 1.18
C9orf3-219ENST00000488186 FAM135BQ49AJ0 1406 aa22.41■■□□□ 1.18
C9orf3-219ENST00000488186 KIAA1210Q9ULL0 1709 aa22.41■■□□□ 1.18
C9orf3-219ENST00000488186 NBPF1Q3BBV0 1214 aa22.41■■□□□ 1.18
C9orf3-219ENST00000488186 NBPF8Q3BBV2 869 aa22.41■■□□□ 1.18
C9orf3-219ENST00000488186 CADPS2Q86UW7 1296 aa22.41■■□□□ 1.18
C9orf3-219ENST00000488186 POGKQ9P215 609 aa22.4■■□□□ 1.18
C9orf3-219ENST00000488186 ADGRL3Q9HAR2 1447 aa22.4■■□□□ 1.18
C9orf3-219ENST00000488186 ROBO2Q9HCK4 1378 aa22.39■■□□□ 1.18
C9orf3-219ENST00000488186 ROCK2O75116 1388 aaKnown RBP22.38■■□□□ 1.17
C9orf3-219ENST00000488186 ADGRB1O14514 1584 aa22.38■■□□□ 1.17
C9orf3-219ENST00000488186 WAPLQ7Z5K2 1190 aa22.37■■□□□ 1.17
C9orf3-219ENST00000488186 ATF3P18847 181 aa22.36■■□□□ 1.17
C9orf3-219ENST00000488186 SLAIN2Q9P270 581 aa22.36■■□□□ 1.17
C9orf3-219ENST00000488186 DLC1Q96QB1 1528 aa22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 131.4 ms