RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 CHGAP10645 457 aaKnown RBP18.7■□□□□ 0.58
SDC3-204ENST00000487984 KCNA6P17658 529 aa18.7■□□□□ 0.58
SDC3-204ENST00000487984 ILDR2Q71H61 639 aa18.7■□□□□ 0.58
SDC3-204ENST00000487984 PLEKHG1Q9ULL1 1385 aa18.69■□□□□ 0.58
SDC3-204ENST00000487984 PPP1R15AO75807 674 aaPredicted RBP18.69■□□□□ 0.58
SDC3-204ENST00000487984 BCANQ96GW7 911 aa18.69■□□□□ 0.58
SDC3-204ENST00000487984 SENP3Q9H4L4 574 aaPredicted RBP18.69■□□□□ 0.58
SDC3-204ENST00000487984 TMEM94Q12767 1356 aa18.68■□□□□ 0.58
SDC3-204ENST00000487984 HDGFP51858 240 aaKnown RBP18.67■□□□□ 0.58
SDC3-204ENST00000487984 MYO5BQ9ULV0 1848 aa18.67■□□□□ 0.58
SDC3-204ENST00000487984 NAIPQ13075 1403 aa18.66■□□□□ 0.58
SDC3-204ENST00000487984 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.65■□□□□ 0.58
SDC3-204ENST00000487984 XIRP1Q702N8 1843 aaKnown RBP18.65■□□□□ 0.58
SDC3-204ENST00000487984 NWD1Q149M9 1564 aa18.64■□□□□ 0.58
SDC3-204ENST00000487984 NUTM2DQ5VT03 806 aaPredicted RBP18.64■□□□□ 0.57
SDC3-204ENST00000487984 PROSER2Q86WR7 435 aaPredicted RBP18.64■□□□□ 0.57
SDC3-204ENST00000487984 NKTRP30414 1462 aaKnown RBP18.64■□□□□ 0.57
SDC3-204ENST00000487984 RBM33Q96EV2 1170 aaKnown RBP18.63■□□□□ 0.57
SDC3-204ENST00000487984 TBX22Q9Y458 520 aa18.61■□□□□ 0.57
SDC3-204ENST00000487984 HFM1A2PYH4 1435 aa18.6■□□□□ 0.57
SDC3-204ENST00000487984 ADAMTS13Q76LX8 1427 aa18.6■□□□□ 0.57
SDC3-204ENST00000487984 MED1Q15648 1581 aaPredicted RBP18.59■□□□□ 0.57
SDC3-204ENST00000487984 SPHKAPQ2M3C7 1700 aa18.57■□□□□ 0.56
SDC3-204ENST00000487984 FAM135BQ49AJ0 1406 aa18.57■□□□□ 0.56
SDC3-204ENST00000487984 DIP2AQ14689 1571 aa18.55■□□□□ 0.56
SDC3-204ENST00000487984 MSH6P52701 1360 aa18.55■□□□□ 0.56
SDC3-204ENST00000487984 TRPM2O94759 1503 aa18.54■□□□□ 0.56
SDC3-204ENST00000487984 CHD2O14647 1828 aaKnown RBP18.54■□□□□ 0.56
SDC3-204ENST00000487984 SOCS7O14512 581 aa18.54■□□□□ 0.56
SDC3-204ENST00000487984 ZNF326Q5BKZ1 582 aaKnown RBP18.54■□□□□ 0.56
SDC3-204ENST00000487984 TRIM52Q96A61 297 aa18.54■□□□□ 0.56
SDC3-204ENST00000487984 PIK3R4Q99570 1358 aa18.54■□□□□ 0.56
SDC3-204ENST00000487984 CLTCL1P53675 1640 aa18.52■□□□□ 0.56
SDC3-204ENST00000487984 PTPRUQ92729 1446 aa18.5■□□□□ 0.55
SDC3-204ENST00000487984 NCOA3Q9Y6Q9 1424 aa18.5■□□□□ 0.55
SDC3-204ENST00000487984 SLC4A1APQ9BWU0 796 aaKnown RBP18.49■□□□□ 0.55
SDC3-204ENST00000487984 SLAIN2Q9P270 581 aa18.49■□□□□ 0.55
SDC3-204ENST00000487984 AMOTL2Q9Y2J4 779 aa18.49■□□□□ 0.55
SDC3-204ENST00000487984 SETBP1Q9Y6X0 1596 aa18.49■□□□□ 0.55
SDC3-204ENST00000487984 ROBO1Q9Y6N7 1651 aa18.49■□□□□ 0.55
SDC3-204ENST00000487984 NRXN3Q9Y4C0 1643 aa18.49■□□□□ 0.55
SDC3-204ENST00000487984 NEXMIFQ5QGS0 1516 aa18.48■□□□□ 0.55
SDC3-204ENST00000487984 C14orf37Q86TY3 774 aa18.47■□□□□ 0.55
SDC3-204ENST00000487984 PHF23Q9BUL5 403 aaPredicted RBP18.46■□□□□ 0.55
SDC3-204ENST00000487984 METP08581 1390 aa18.45■□□□□ 0.54
SDC3-204ENST00000487984 C19orf44Q9H6X5 657 aa18.44■□□□□ 0.54
SDC3-204ENST00000487984 FOXD1Q16676 465 aa18.42■□□□□ 0.54
SDC3-204ENST00000487984 CADPS2Q86UW7 1296 aa18.42■□□□□ 0.54
SDC3-204ENST00000487984 XRN1Q8IZH2 1706 aaKnown RBP18.42■□□□□ 0.54
SDC3-204ENST00000487984 ATF3P18847 181 aa18.41■□□□□ 0.54
SDC3-204ENST00000487984 KIF1BO60333 1816 aa18.41■□□□□ 0.54
SDC3-204ENST00000487984 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.4■□□□□ 0.54
SDC3-204ENST00000487984 VGFO15240 615 aaPredicted RBP18.39■□□□□ 0.53
SDC3-204ENST00000487984 RPGRIP1LQ68CZ1 1315 aa18.38■□□□□ 0.53
SDC3-204ENST00000487984 MPHOSPH9Q99550 1183 aa18.37■□□□□ 0.53
SDC3-204ENST00000487984 DCCP43146 1447 aa18.37■□□□□ 0.53
SDC3-204ENST00000487984 PHLPP1O60346 1717 aa18.36■□□□□ 0.53
SDC3-204ENST00000487984 RGS17Q9UGC6 210 aaPredicted RBP18.36■□□□□ 0.53
SDC3-204ENST00000487984 CCDC144AA2RUR9 1427 aa18.35■□□□□ 0.53
SDC3-204ENST00000487984 JCADQ9P266 1359 aa18.35■□□□□ 0.53
SDC3-204ENST00000487984 COL16A1Q07092 1604 aaPredicted RBP18.34■□□□□ 0.53
SDC3-204ENST00000487984 BRINP3Q76B58 766 aa18.33■□□□□ 0.52
SDC3-204ENST00000487984 SETD5Q9C0A6 1442 aa18.32■□□□□ 0.52
SDC3-204ENST00000487984 ADGRL3Q9HAR2 1447 aa18.32■□□□□ 0.52
SDC3-204ENST00000487984 AHDC1Q5TGY3 1603 aaPredicted RBP18.32■□□□□ 0.52
SDC3-204ENST00000487984 MST1RQ04912 1400 aa18.32■□□□□ 0.52
SDC3-204ENST00000487984 PTCH1Q13635 1447 aa18.32■□□□□ 0.52
SDC3-204ENST00000487984 SPATA31E1Q6ZUB1 1445 aa18.32■□□□□ 0.52
SDC3-204ENST00000487984 SETD1AO15047 1707 aaKnown RBP18.31■□□□□ 0.52
SDC3-204ENST00000487984 ROBO2Q9HCK4 1378 aa18.3■□□□□ 0.52
SDC3-204ENST00000487984 PPLO60437 1756 aa18.3■□□□□ 0.52
SDC3-204ENST00000487984 RGL3Q3MIN7 710 aa18.29■□□□□ 0.52
SDC3-204ENST00000487984 PRAG1Q86YV5 1406 aa18.29■□□□□ 0.52
SDC3-204ENST00000487984 ASXL1Q8IXJ9 1541 aa18.28■□□□□ 0.52
SDC3-204ENST00000487984 ADGRF5Q8IZF2 1346 aa18.28■□□□□ 0.52
SDC3-204ENST00000487984 ACIN1Q9UKV3 1341 aaKnown RBP18.28■□□□□ 0.52
SDC3-204ENST00000487984 NALCNQ8IZF0 1738 aa18.26■□□□□ 0.51
SDC3-204ENST00000487984 ANKRD30BQ9BXX2 1392 aa18.26■□□□□ 0.51
SDC3-204ENST00000487984 RAB3GAP2Q9H2M9 1393 aa18.26■□□□□ 0.51
SDC3-204ENST00000487984 SPATA31A6Q5VVP1 1343 aa18.25■□□□□ 0.51
SDC3-204ENST00000487984 POTEAQ6S8J7 498 aa18.25■□□□□ 0.51
SDC3-204ENST00000487984 LRP6O75581 1613 aa18.24■□□□□ 0.51
SDC3-204ENST00000487984 C1orf167Q5SNV9 1468 aa18.23■□□□□ 0.51
SDC3-204ENST00000487984 DDX17Q92841 729 aaKnown RBP18.22■□□□□ 0.51
SDC3-204ENST00000487984 PIK3C2GO75747 1445 aa18.21■□□□□ 0.51
SDC3-204ENST00000487984 SHPRHQ149N8 1683 aa18.21■□□□□ 0.51
SDC3-204ENST00000487984 IFT172Q9UG01 1749 aa18.2■□□□□ 0.5
SDC3-204ENST00000487984 NHSL1Q5SYE7 1610 aa18.2■□□□□ 0.5
SDC3-204ENST00000487984 MEX3CQ5U5Q3 659 aaKnown RBP18.19■□□□□ 0.5
SDC3-204ENST00000487984 LRPPRCP42704 1394 aaKnown RBP18.18■□□□□ 0.5
SDC3-204ENST00000487984 TECPR2O15040 1411 aa18.18■□□□□ 0.5
SDC3-204ENST00000487984 TMEM132EQ6IEE7 984 aa18.18■□□□□ 0.5
SDC3-204ENST00000487984 STK26Q9P289 416 aa18.18■□□□□ 0.5
SDC3-204ENST00000487984 LRRC59Q96AG4 307 aaKnown RBP18.17■□□□□ 0.5
SDC3-204ENST00000487984 ORAI2Q96SN7 254 aa18.17■□□□□ 0.5
SDC3-204ENST00000487984 ABCC11Q96J66 1382 aa18.17■□□□□ 0.5
SDC3-204ENST00000487984 NUTM2BA6NNL0 878 aaPredicted RBP18.16■□□□□ 0.5
SDC3-204ENST00000487984 NUTM2EB1AL46 878 aaPredicted RBP18.16■□□□□ 0.5
SDC3-204ENST00000487984 NUTM2AQ8IVF1 878 aaPredicted RBP18.16■□□□□ 0.5
SDC3-204ENST00000487984 NRXN1Q9ULB1 1477 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms