RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 SENP3Q9H4L4 574 aaPredicted RBP30.63■■■□□ 2.49
HDAC4-209ENST00000487617 MYO5BQ9ULV0 1848 aa30.63■■■□□ 2.49
HDAC4-209ENST00000487617 STRCP1A6NGW2 1772 aa30.61■■■□□ 2.49
HDAC4-209ENST00000487617 SLC4A1APQ9BWU0 796 aaKnown RBP30.61■■■□□ 2.49
HDAC4-209ENST00000487617 SPHKAPQ2M3C7 1700 aa30.61■■■□□ 2.49
HDAC4-209ENST00000487617 LRRC7Q96NW7 1537 aa30.6■■■□□ 2.49
HDAC4-209ENST00000487617 PLEKHG1Q9ULL1 1385 aa30.6■■■□□ 2.49
HDAC4-209ENST00000487617 NUTM2DQ5VT03 806 aaPredicted RBP30.59■■■□□ 2.49
HDAC4-209ENST00000487617 TOM1O60784 492 aa30.58■■■□□ 2.49
HDAC4-209ENST00000487617 KCNA6P17658 529 aa30.55■■■□□ 2.48
HDAC4-209ENST00000487617 TRPM2O94759 1503 aa30.54■■■□□ 2.48
HDAC4-209ENST00000487617 SCAF1Q9H7N4 1312 aaKnown RBP30.53■■■□□ 2.48
HDAC4-209ENST00000487617 ZNF326Q5BKZ1 582 aaKnown RBP30.53■■■□□ 2.48
HDAC4-209ENST00000487617 PIP4K2BP78356 416 aa30.52■■■□□ 2.48
HDAC4-209ENST00000487617 CLTCL1P53675 1640 aa30.5■■■□□ 2.47
HDAC4-209ENST00000487617 TBX22Q9Y458 520 aa30.48■■■□□ 2.47
HDAC4-209ENST00000487617 SETD5Q9C0A6 1442 aa30.47■■■□□ 2.47
HDAC4-209ENST00000487617 FOXD1Q16676 465 aa30.46■■■□□ 2.47
HDAC4-209ENST00000487617 PROSER2Q86WR7 435 aaPredicted RBP30.46■■■□□ 2.47
HDAC4-209ENST00000487617 MPHOSPH9Q99550 1183 aa30.44■■■□□ 2.46
HDAC4-209ENST00000487617 ADAMTS13Q76LX8 1427 aa30.44■■■□□ 2.46
HDAC4-209ENST00000487617 TMEM94Q12767 1356 aa30.43■■■□□ 2.46
HDAC4-209ENST00000487617 ACIN1Q9UKV3 1341 aaKnown RBP30.43■■■□□ 2.46
HDAC4-209ENST00000487617 NWD1Q149M9 1564 aa30.41■■■□□ 2.46
HDAC4-209ENST00000487617 NKTRP30414 1462 aaKnown RBP30.41■■■□□ 2.46
HDAC4-209ENST00000487617 ALKQ9UM73 1620 aa30.4■■■□□ 2.46
HDAC4-209ENST00000487617 RBM33Q96EV2 1170 aaKnown RBP30.4■■■□□ 2.46
HDAC4-209ENST00000487617 DIP2AQ14689 1571 aa30.38■■■□□ 2.45
HDAC4-209ENST00000487617 KIF1BO60333 1816 aa30.36■■■□□ 2.45
HDAC4-209ENST00000487617 RAB3GAP2Q9H2M9 1393 aa30.36■■■□□ 2.45
HDAC4-209ENST00000487617 HSPA1LP34931 641 aa30.35■■■□□ 2.45
HDAC4-209ENST00000487617 PIK3R4Q99570 1358 aa30.35■■■□□ 2.45
HDAC4-209ENST00000487617 XIRP1Q702N8 1843 aaKnown RBP30.35■■■□□ 2.45
HDAC4-209ENST00000487617 NEXMIFQ5QGS0 1516 aa30.34■■■□□ 2.45
HDAC4-209ENST00000487617 CHD2O14647 1828 aaKnown RBP30.33■■■□□ 2.45
HDAC4-209ENST00000487617 SETBP1Q9Y6X0 1596 aa30.32■■■□□ 2.44
HDAC4-209ENST00000487617 CCDC144AA2RUR9 1427 aa30.31■■■□□ 2.44
HDAC4-209ENST00000487617 RPGRIP1LQ68CZ1 1315 aa30.29■■■□□ 2.44
HDAC4-209ENST00000487617 VGFO15240 615 aaPredicted RBP30.29■■■□□ 2.44
HDAC4-209ENST00000487617 AMOTL2Q9Y2J4 779 aa30.29■■■□□ 2.44
HDAC4-209ENST00000487617 NRXN3Q9Y4C0 1643 aa30.28■■■□□ 2.44
HDAC4-209ENST00000487617 MSH6P52701 1360 aa30.28■■■□□ 2.44
HDAC4-209ENST00000487617 PTPRUQ92729 1446 aa30.26■■■□□ 2.43
HDAC4-209ENST00000487617 METP08581 1390 aa30.24■■■□□ 2.43
HDAC4-209ENST00000487617 C14orf37Q86TY3 774 aa30.23■■■□□ 2.43
HDAC4-209ENST00000487617 RGL3Q3MIN7 710 aa30.22■■■□□ 2.43
HDAC4-209ENST00000487617 NCOA3Q9Y6Q9 1424 aa30.22■■■□□ 2.43
HDAC4-209ENST00000487617 DISP3Q9P2K9 1392 aa30.19■■■□□ 2.42
HDAC4-209ENST00000487617 FAM135BQ49AJ0 1406 aa30.18■■■□□ 2.42
HDAC4-209ENST00000487617 SPATA31E1Q6ZUB1 1445 aa30.18■■■□□ 2.42
HDAC4-209ENST00000487617 HRCP23327 699 aa30.17■■■□□ 2.42
HDAC4-209ENST00000487617 PPLO60437 1756 aa30.14■■■□□ 2.42
HDAC4-209ENST00000487617 C19orf44Q9H6X5 657 aa30.14■■■□□ 2.42
HDAC4-209ENST00000487617 SLAIN2Q9P270 581 aa30.14■■■□□ 2.42
HDAC4-209ENST00000487617 XRN1Q8IZH2 1706 aaKnown RBP30.13■■■□□ 2.41
HDAC4-209ENST00000487617 ATF3P18847 181 aa30.11■■■□□ 2.41
HDAC4-209ENST00000487617 ADGRF5Q8IZF2 1346 aa30.11■■■□□ 2.41
HDAC4-209ENST00000487617 ANKRD30BQ9BXX2 1392 aa30.11■■■□□ 2.41
HDAC4-209ENST00000487617 CADPS2Q86UW7 1296 aa30.09■■■□□ 2.41
HDAC4-209ENST00000487617 ROBO1Q9Y6N7 1651 aa30.06■■■□□ 2.4
HDAC4-209ENST00000487617 SIPA1L2Q9P2F8 1722 aaPredicted RBP30.05■■■□□ 2.4
HDAC4-209ENST00000487617 SETD1AO15047 1707 aaKnown RBP30.03■■■□□ 2.4
HDAC4-209ENST00000487617 DCCP43146 1447 aa30■■■□□ 2.39
HDAC4-209ENST00000487617 PTCH1Q13635 1447 aa30■■■□□ 2.39
HDAC4-209ENST00000487617 IFT172Q9UG01 1749 aa29.99■■■□□ 2.39
HDAC4-209ENST00000487617 ROBO2Q9HCK4 1378 aa29.99■■■□□ 2.39
HDAC4-209ENST00000487617 ADGRL3Q9HAR2 1447 aa29.97■■■□□ 2.39
HDAC4-209ENST00000487617 MED1Q15648 1581 aaPredicted RBP29.97■■■□□ 2.39
HDAC4-209ENST00000487617 PIK3C2GO75747 1445 aa29.96■■■□□ 2.39
HDAC4-209ENST00000487617 PRAG1Q86YV5 1406 aa29.95■■■□□ 2.38
HDAC4-209ENST00000487617 STK26Q9P289 416 aa29.93■■■□□ 2.38
HDAC4-209ENST00000487617 TMEM132EQ6IEE7 984 aa29.92■■■□□ 2.38
HDAC4-209ENST00000487617 MYOM2P54296 1465 aa29.92■■■□□ 2.38
HDAC4-209ENST00000487617 ILDR2Q71H61 639 aa29.91■■■□□ 2.38
HDAC4-209ENST00000487617 MST1RQ04912 1400 aa29.9■■■□□ 2.38
HDAC4-209ENST00000487617 BRINP3Q76B58 766 aa29.9■■■□□ 2.38
HDAC4-209ENST00000487617 LRPPRCP42704 1394 aaKnown RBP29.9■■■□□ 2.38
HDAC4-209ENST00000487617 C14orf93Q9H972 538 aaKnown RBP29.89■■■□□ 2.38
HDAC4-209ENST00000487617 NALCNQ8IZF0 1738 aa29.88■■■□□ 2.37
HDAC4-209ENST00000487617 NRXN1Q9ULB1 1477 aa29.88■■■□□ 2.37
HDAC4-209ENST00000487617 PHLPP1O60346 1717 aa29.88■■■□□ 2.37
HDAC4-209ENST00000487617 CFAP70Q5T0N1 1121 aa29.87■■■□□ 2.37
HDAC4-209ENST00000487617 ASXL1Q8IXJ9 1541 aa29.86■■■□□ 2.37
HDAC4-209ENST00000487617 PHF23Q9BUL5 403 aaPredicted RBP29.86■■■□□ 2.37
HDAC4-209ENST00000487617 KDM2AQ9Y2K7 1162 aa29.85■■■□□ 2.37
HDAC4-209ENST00000487617 ABCC11Q96J66 1382 aa29.85■■■□□ 2.37
HDAC4-209ENST00000487617 DCAF11Q8TEB1 546 aa29.84■■■□□ 2.37
HDAC4-209ENST00000487617 TECPR2O15040 1411 aa29.84■■■□□ 2.37
HDAC4-209ENST00000487617 YTHDC2Q9H6S0 1430 aaKnown RBP29.83■■■□□ 2.37
HDAC4-209ENST00000487617 JCADQ9P266 1359 aa29.82■■■□□ 2.36
HDAC4-209ENST00000487617 WAPLQ7Z5K2 1190 aa29.82■■■□□ 2.36
HDAC4-209ENST00000487617 AHDC1Q5TGY3 1603 aaPredicted RBP29.82■■■□□ 2.36
HDAC4-209ENST00000487617 DHX57Q6P158 1386 aaKnown RBP29.8■■■□□ 2.36
HDAC4-209ENST00000487617 COL16A1Q07092 1604 aaPredicted RBP29.8■■■□□ 2.36
HDAC4-209ENST00000487617 C1orf167Q5SNV9 1468 aa29.79■■■□□ 2.36
HDAC4-209ENST00000487617 STAC3Q96MF2 364 aa29.78■■■□□ 2.36
HDAC4-209ENST00000487617 LAMC1P11047 1609 aa29.78■■■□□ 2.36
HDAC4-209ENST00000487617 PLEKHH1Q9ULM0 1364 aa29.77■■■□□ 2.36
HDAC4-209ENST00000487617 KNDC1Q76NI1 1749 aa29.75■■■□□ 2.35
HDAC4-209ENST00000487617 SIRT1Q96EB6 747 aa29.74■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms