RNA–Protein interactions for RNA: ENST00000487215.1

SMPDL3A-202, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2

Gene SMPDL3A, Length 903 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-202ENST00000487215 ROBO1Q9Y6N7 1651 aa30.29■■■□□ 2.44
SMPDL3A-202ENST00000487215 ANKRD50Q9ULJ7 1429 aa30.28■■■□□ 2.44
SMPDL3A-202ENST00000487215 FAM50AQ14320 339 aaKnown RBP30.26■■■□□ 2.43
SMPDL3A-202ENST00000487215 ZFYVE9O95405 1425 aa30.24■■■□□ 2.43
SMPDL3A-202ENST00000487215 BCANQ96GW7 911 aa30.24■■■□□ 2.43
SMPDL3A-202ENST00000487215 PLEKHG1Q9ULL1 1385 aa30.21■■■□□ 2.43
SMPDL3A-202ENST00000487215 MSH6P52701 1360 aa30.2■■■□□ 2.43
SMPDL3A-202ENST00000487215 GCC2Q8IWJ2 1684 aa30.2■■■□□ 2.42
SMPDL3A-202ENST00000487215 RIMS2Q9UQ26 1411 aa30.19■■■□□ 2.42
SMPDL3A-202ENST00000487215 MYO5BQ9ULV0 1848 aa30.18■■■□□ 2.42
SMPDL3A-202ENST00000487215 TMEM131LA2VDJ0 1609 aa30.18■■■□□ 2.42
SMPDL3A-202ENST00000487215 PPP1R15AO75807 674 aaPredicted RBP30.15■■■□□ 2.42
SMPDL3A-202ENST00000487215 UNC13BO14795 1591 aa30.15■■■□□ 2.42
SMPDL3A-202ENST00000487215 POTEAQ6S8J7 498 aa30.14■■■□□ 2.42
SMPDL3A-202ENST00000487215 CHD2O14647 1828 aaKnown RBP30.14■■■□□ 2.42
SMPDL3A-202ENST00000487215 SLAIN2Q9P270 581 aa30.13■■■□□ 2.41
SMPDL3A-202ENST00000487215 HDGFP51858 240 aaKnown RBP30.12■■■□□ 2.41
SMPDL3A-202ENST00000487215 PHLPP1O60346 1717 aa30.09■■■□□ 2.41
SMPDL3A-202ENST00000487215 TBX22Q9Y458 520 aa30.09■■■□□ 2.41
SMPDL3A-202ENST00000487215 E9PCH4 1651 aa30.07■■■□□ 2.41
SMPDL3A-202ENST00000487215 CHGAP10645 457 aaKnown RBP30.07■■■□□ 2.4
SMPDL3A-202ENST00000487215 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.06■■■□□ 2.4
SMPDL3A-202ENST00000487215 ADAMTS13Q76LX8 1427 aa30.05■■■□□ 2.4
SMPDL3A-202ENST00000487215 JCADQ9P266 1359 aa30.05■■■□□ 2.4
SMPDL3A-202ENST00000487215 NCOA3Q9Y6Q9 1424 aa30.05■■■□□ 2.4
SMPDL3A-202ENST00000487215 NUTM2DQ5VT03 806 aaPredicted RBP30.03■■■□□ 2.4
SMPDL3A-202ENST00000487215 ROCK1Q13464 1354 aa30.03■■■□□ 2.4
SMPDL3A-202ENST00000487215 COL16A1Q07092 1604 aaPredicted RBP30.02■■■□□ 2.4
SMPDL3A-202ENST00000487215 IQGAP3Q86VI3 1631 aa30.02■■■□□ 2.4
SMPDL3A-202ENST00000487215 DIP2AQ14689 1571 aa30.02■■■□□ 2.4
SMPDL3A-202ENST00000487215 C14orf37Q86TY3 774 aa29.99■■■□□ 2.39
SMPDL3A-202ENST00000487215 PIK3R4Q99570 1358 aa29.98■■■□□ 2.39
SMPDL3A-202ENST00000487215 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.95■■■□□ 2.38
SMPDL3A-202ENST00000487215 NUP155O75694 1391 aa29.93■■■□□ 2.38
SMPDL3A-202ENST00000487215 TRPM2O94759 1503 aa29.93■■■□□ 2.38
SMPDL3A-202ENST00000487215 CADPS2Q86UW7 1296 aa29.93■■■□□ 2.38
SMPDL3A-202ENST00000487215 C19orf44Q9H6X5 657 aa29.93■■■□□ 2.38
SMPDL3A-202ENST00000487215 LRP6O75581 1613 aa29.93■■■□□ 2.38
SMPDL3A-202ENST00000487215 AHDC1Q5TGY3 1603 aaPredicted RBP29.92■■■□□ 2.38
SMPDL3A-202ENST00000487215 SETD1AO15047 1707 aaKnown RBP29.91■■■□□ 2.38
SMPDL3A-202ENST00000487215 PTPRUQ92729 1446 aa29.91■■■□□ 2.38
SMPDL3A-202ENST00000487215 ATF3P18847 181 aa29.9■■■□□ 2.38
SMPDL3A-202ENST00000487215 SPATA31A6Q5VVP1 1343 aa29.9■■■□□ 2.38
SMPDL3A-202ENST00000487215 AMOTL2Q9Y2J4 779 aa29.88■■■□□ 2.37
SMPDL3A-202ENST00000487215 ITGAEP38570 1179 aa29.85■■■□□ 2.37
SMPDL3A-202ENST00000487215 NRXN3Q9Y4C0 1643 aa29.84■■■□□ 2.37
SMPDL3A-202ENST00000487215 SHPRHQ149N8 1683 aa29.84■■■□□ 2.37
SMPDL3A-202ENST00000487215 MEX3CQ5U5Q3 659 aaKnown RBP29.82■■■□□ 2.36
SMPDL3A-202ENST00000487215 BRINP3Q76B58 766 aa29.82■■■□□ 2.36
SMPDL3A-202ENST00000487215 XRN1Q8IZH2 1706 aaKnown RBP29.82■■■□□ 2.36
SMPDL3A-202ENST00000487215 SETBP1Q9Y6X0 1596 aa29.81■■■□□ 2.36
SMPDL3A-202ENST00000487215 DCCP43146 1447 aa29.8■■■□□ 2.36
SMPDL3A-202ENST00000487215 SPHKAPQ2M3C7 1700 aa29.79■■■□□ 2.36
SMPDL3A-202ENST00000487215 ZNF772Q68DY9 489 aaPredicted RBP29.78■■■□□ 2.36
SMPDL3A-202ENST00000487215 ASXL1Q8IXJ9 1541 aa29.76■■■□□ 2.35
SMPDL3A-202ENST00000487215 MST1RQ04912 1400 aa29.74■■■□□ 2.35
SMPDL3A-202ENST00000487215 ZNF326Q5BKZ1 582 aaKnown RBP29.74■■■□□ 2.35
SMPDL3A-202ENST00000487215 METP08581 1390 aa29.74■■■□□ 2.35
SMPDL3A-202ENST00000487215 PPARGC1BQ86YN6 1023 aaKnown RBP29.71■■■□□ 2.35
SMPDL3A-202ENST00000487215 TRIM52Q96A61 297 aa29.71■■■□□ 2.35
SMPDL3A-202ENST00000487215 SETD5Q9C0A6 1442 aa29.7■■■□□ 2.34
SMPDL3A-202ENST00000487215 NUTM2BA6NNL0 878 aaPredicted RBP29.69■■■□□ 2.34
SMPDL3A-202ENST00000487215 NUTM2EB1AL46 878 aaPredicted RBP29.69■■■□□ 2.34
SMPDL3A-202ENST00000487215 NUTM2AQ8IVF1 878 aaPredicted RBP29.69■■■□□ 2.34
SMPDL3A-202ENST00000487215 NHSL1Q5SYE7 1610 aa29.69■■■□□ 2.34
SMPDL3A-202ENST00000487215 CLTCL1P53675 1640 aa29.68■■■□□ 2.34
SMPDL3A-202ENST00000487215 NEXMIFQ5QGS0 1516 aa29.68■■■□□ 2.34
SMPDL3A-202ENST00000487215 ADGRL3Q9HAR2 1447 aa29.66■■■□□ 2.34
SMPDL3A-202ENST00000487215 UPF1Q92900 1129 aaKnown RBP eCLIP29.65■■■□□ 2.34
SMPDL3A-202ENST00000487215 RXRBP28702 533 aa29.63■■■□□ 2.33
SMPDL3A-202ENST00000487215 NALCNQ8IZF0 1738 aa29.62■■■□□ 2.33
SMPDL3A-202ENST00000487215 AFF2P51816 1311 aa29.61■■■□□ 2.33
SMPDL3A-202ENST00000487215 DDX17Q92841 729 aaKnown RBP29.6■■■□□ 2.33
SMPDL3A-202ENST00000487215 LRRC59Q96AG4 307 aaKnown RBP29.6■■■□□ 2.33
SMPDL3A-202ENST00000487215 CDK12Q9NYV4 1490 aaPredicted RBP29.59■■■□□ 2.33
SMPDL3A-202ENST00000487215 PNPLA6Q8IY17 1366 aa29.57■■■□□ 2.32
SMPDL3A-202ENST00000487215 NAIPQ13075 1403 aa29.56■■■□□ 2.32
SMPDL3A-202ENST00000487215 KIF1BO60333 1816 aa29.55■■■□□ 2.32
SMPDL3A-202ENST00000487215 C1orf167Q5SNV9 1468 aa29.54■■■□□ 2.32
SMPDL3A-202ENST00000487215 PTCH1Q13635 1447 aa29.53■■■□□ 2.32
SMPDL3A-202ENST00000487215 RRBP1Q9P2E9 1410 aaKnown RBP29.53■■■□□ 2.32
SMPDL3A-202ENST00000487215 C8orf37Q96NL8 207 aa29.52■■■□□ 2.32
SMPDL3A-202ENST00000487215 ROBO2Q9HCK4 1378 aa29.5■■■□□ 2.31
SMPDL3A-202ENST00000487215 LAMC1P11047 1609 aa29.48■■■□□ 2.31
SMPDL3A-202ENST00000487215 RGS12O14924 1447 aa29.47■■■□□ 2.31
SMPDL3A-202ENST00000487215 VGFO15240 615 aaPredicted RBP29.47■■■□□ 2.31
SMPDL3A-202ENST00000487215 PRAG1Q86YV5 1406 aa29.46■■■□□ 2.31
SMPDL3A-202ENST00000487215 QTRT2Q9H974 415 aaKnown RBP29.45■■■□□ 2.31
SMPDL3A-202ENST00000487215 RBM6P78332 1123 aaKnown RBP29.44■■■□□ 2.3
SMPDL3A-202ENST00000487215 ORAI2Q96SN7 254 aa29.44■■■□□ 2.3
SMPDL3A-202ENST00000487215 SOS2Q07890 1332 aaPredicted RBP29.43■■■□□ 2.3
SMPDL3A-202ENST00000487215 ADAMTS2O95450 1211 aa29.42■■■□□ 2.3
SMPDL3A-202ENST00000487215 RPGRIP1LQ68CZ1 1315 aa29.42■■■□□ 2.3
SMPDL3A-202ENST00000487215 HFM1A2PYH4 1435 aa29.4■■■□□ 2.3
SMPDL3A-202ENST00000487215 NGLY1Q96IV0 654 aa29.4■■■□□ 2.3
SMPDL3A-202ENST00000487215 PPLO60437 1756 aa29.37■■■□□ 2.29
SMPDL3A-202ENST00000487215 SLC4A1APQ9BWU0 796 aaKnown RBP29.37■■■□□ 2.29
SMPDL3A-202ENST00000487215 COL22A1Q8NFW1 1626 aaPredicted RBP29.31■■■□□ 2.28
SMPDL3A-202ENST00000487215 CDC42BPGQ6DT37 1551 aa29.31■■■□□ 2.28
SMPDL3A-202ENST00000487215 USP21Q9UK80 565 aa29.31■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms