RNA–Protein interactions for RNA: ENST00000486100.1

PRPF40A-209, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 4

Gene PRPF40A, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-209ENST00000486100 KCNA6P17658 529 aa27.73■■■□□ 2.03
PRPF40A-209ENST00000486100 TMEM131LA2VDJ0 1609 aa27.73■■■□□ 2.03
PRPF40A-209ENST00000486100 PIP4K2BP78356 416 aa27.72■■■□□ 2.03
PRPF40A-209ENST00000486100 STRCP1A6NGW2 1772 aa27.71■■■□□ 2.03
PRPF40A-209ENST00000486100 TRIM52Q96A61 297 aa27.71■■■□□ 2.03
PRPF40A-209ENST00000486100 PLEKHG1Q9ULL1 1385 aa27.7■■■□□ 2.02
PRPF40A-209ENST00000486100 SCAF1Q9H7N4 1312 aaKnown RBP27.69■■■□□ 2.02
PRPF40A-209ENST00000486100 SENP3Q9H4L4 574 aaPredicted RBP27.67■■■□□ 2.02
PRPF40A-209ENST00000486100 NUTM2DQ5VT03 806 aaPredicted RBP27.65■■■□□ 2.02
PRPF40A-209ENST00000486100 TBX22Q9Y458 520 aa27.65■■■□□ 2.02
PRPF40A-209ENST00000486100 PROSER2Q86WR7 435 aaPredicted RBP27.62■■■□□ 2.01
PRPF40A-209ENST00000486100 MYO5BQ9ULV0 1848 aa27.62■■■□□ 2.01
PRPF40A-209ENST00000486100 SLC4A1APQ9BWU0 796 aaKnown RBP27.61■■■□□ 2.01
PRPF40A-209ENST00000486100 HSPA1LP34931 641 aa27.6■■■□□ 2.01
PRPF40A-209ENST00000486100 TMEM94Q12767 1356 aa27.59■■■□□ 2.01
PRPF40A-209ENST00000486100 ZNF326Q5BKZ1 582 aaKnown RBP27.58■■■□□ 2.01
PRPF40A-209ENST00000486100 ALKQ9UM73 1620 aa27.58■■■□□ 2.01
PRPF40A-209ENST00000486100 SPHKAPQ2M3C7 1700 aa27.56■■■□□ 2
PRPF40A-209ENST00000486100 ADAMTS13Q76LX8 1427 aa27.55■■■□□ 2
PRPF40A-209ENST00000486100 RBM33Q96EV2 1170 aaKnown RBP27.54■■■□□ 2
PRPF40A-209ENST00000486100 TRPM2O94759 1503 aa27.53■■■□□ 2
PRPF40A-209ENST00000486100 NKTRP30414 1462 aaKnown RBP27.52■■■□□ 2
PRPF40A-209ENST00000486100 DISP3Q9P2K9 1392 aa27.52■■■□□ 2
PRPF40A-209ENST00000486100 NWD1Q149M9 1564 aa27.51■■□□□ 1.99
PRPF40A-209ENST00000486100 PIK3R4Q99570 1358 aa27.5■■□□□ 1.99
PRPF40A-209ENST00000486100 CLTCL1P53675 1640 aa27.48■■□□□ 1.99
PRPF40A-209ENST00000486100 ACIN1Q9UKV3 1341 aaKnown RBP27.47■■□□□ 1.99
PRPF40A-209ENST00000486100 XIRP1Q702N8 1843 aaKnown RBP27.47■■□□□ 1.99
PRPF40A-209ENST00000486100 MPHOSPH9Q99550 1183 aa27.47■■□□□ 1.99
PRPF40A-209ENST00000486100 FOXD1Q16676 465 aa27.46■■□□□ 1.99
PRPF40A-209ENST00000486100 DIP2AQ14689 1571 aa27.46■■□□□ 1.99
PRPF40A-209ENST00000486100 AMOTL2Q9Y2J4 779 aa27.44■■□□□ 1.98
PRPF40A-209ENST00000486100 CHD2O14647 1828 aaKnown RBP27.44■■□□□ 1.98
PRPF40A-209ENST00000486100 MSH6P52701 1360 aa27.43■■□□□ 1.98
PRPF40A-209ENST00000486100 FAM135BQ49AJ0 1406 aa27.42■■□□□ 1.98
PRPF40A-209ENST00000486100 SETD5Q9C0A6 1442 aa27.42■■□□□ 1.98
PRPF40A-209ENST00000486100 NCOA3Q9Y6Q9 1424 aa27.42■■□□□ 1.98
PRPF40A-209ENST00000486100 RPGRIP1LQ68CZ1 1315 aa27.41■■□□□ 1.98
PRPF40A-209ENST00000486100 VGFO15240 615 aaPredicted RBP27.41■■□□□ 1.98
PRPF40A-209ENST00000486100 NEXMIFQ5QGS0 1516 aa27.39■■□□□ 1.98
PRPF40A-209ENST00000486100 PTPRUQ92729 1446 aa27.39■■□□□ 1.97
PRPF40A-209ENST00000486100 SETBP1Q9Y6X0 1596 aa27.39■■□□□ 1.97
PRPF40A-209ENST00000486100 C14orf37Q86TY3 774 aa27.37■■□□□ 1.97
PRPF40A-209ENST00000486100 SLAIN2Q9P270 581 aa27.37■■□□□ 1.97
PRPF40A-209ENST00000486100 METP08581 1390 aa27.35■■□□□ 1.97
PRPF40A-209ENST00000486100 KIF1BO60333 1816 aa27.35■■□□□ 1.97
PRPF40A-209ENST00000486100 C19orf44Q9H6X5 657 aa27.35■■□□□ 1.97
PRPF40A-209ENST00000486100 NRXN3Q9Y4C0 1643 aa27.34■■□□□ 1.97
PRPF40A-209ENST00000486100 CCDC144AA2RUR9 1427 aa27.33■■□□□ 1.96
PRPF40A-209ENST00000486100 ILDR2Q71H61 639 aa27.32■■□□□ 1.96
PRPF40A-209ENST00000486100 RAB3GAP2Q9H2M9 1393 aa27.31■■□□□ 1.96
PRPF40A-209ENST00000486100 CADPS2Q86UW7 1296 aa27.3■■□□□ 1.96
PRPF40A-209ENST00000486100 ATF3P18847 181 aa27.29■■□□□ 1.96
PRPF40A-209ENST00000486100 RGL3Q3MIN7 710 aa27.28■■□□□ 1.96
PRPF40A-209ENST00000486100 SPATA31E1Q6ZUB1 1445 aa27.24■■□□□ 1.95
PRPF40A-209ENST00000486100 HRCP23327 699 aa27.23■■□□□ 1.95
PRPF40A-209ENST00000486100 ROBO1Q9Y6N7 1651 aa27.23■■□□□ 1.95
PRPF40A-209ENST00000486100 XRN1Q8IZH2 1706 aaKnown RBP27.22■■□□□ 1.95
PRPF40A-209ENST00000486100 MED1Q15648 1581 aaPredicted RBP27.22■■□□□ 1.95
PRPF40A-209ENST00000486100 ADGRF5Q8IZF2 1346 aa27.2■■□□□ 1.95
PRPF40A-209ENST00000486100 ANKRD30BQ9BXX2 1392 aa27.2■■□□□ 1.94
PRPF40A-209ENST00000486100 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.18■■□□□ 1.94
PRPF40A-209ENST00000486100 DCCP43146 1447 aa27.17■■□□□ 1.94
PRPF40A-209ENST00000486100 PPLO60437 1756 aa27.16■■□□□ 1.94
PRPF40A-209ENST00000486100 PHF23Q9BUL5 403 aaPredicted RBP27.15■■□□□ 1.94
PRPF40A-209ENST00000486100 ROBO2Q9HCK4 1378 aa27.12■■□□□ 1.93
PRPF40A-209ENST00000486100 BRINP3Q76B58 766 aa27.12■■□□□ 1.93
PRPF40A-209ENST00000486100 PTCH1Q13635 1447 aa27.12■■□□□ 1.93
PRPF40A-209ENST00000486100 ADGRL3Q9HAR2 1447 aa27.12■■□□□ 1.93
PRPF40A-209ENST00000486100 PRAG1Q86YV5 1406 aa27.1■■□□□ 1.93
PRPF40A-209ENST00000486100 SOCS7O14512 581 aa27.1■■□□□ 1.93
PRPF40A-209ENST00000486100 SETD1AO15047 1707 aaKnown RBP27.1■■□□□ 1.93
PRPF40A-209ENST00000486100 MST1RQ04912 1400 aa27.08■■□□□ 1.93
PRPF40A-209ENST00000486100 JCADQ9P266 1359 aa27.08■■□□□ 1.93
PRPF40A-209ENST00000486100 PIK3C2GO75747 1445 aa27.05■■□□□ 1.92
PRPF40A-209ENST00000486100 PHLPP1O60346 1717 aa27.04■■□□□ 1.92
PRPF40A-209ENST00000486100 TMEM132EQ6IEE7 984 aa27.04■■□□□ 1.92
PRPF40A-209ENST00000486100 C14orf93Q9H972 538 aaKnown RBP27.04■■□□□ 1.92
PRPF40A-209ENST00000486100 STK26Q9P289 416 aa27.04■■□□□ 1.92
PRPF40A-209ENST00000486100 LRPPRCP42704 1394 aaKnown RBP27.02■■□□□ 1.92
PRPF40A-209ENST00000486100 ABCC11Q96J66 1382 aa27.01■■□□□ 1.91
PRPF40A-209ENST00000486100 IFT172Q9UG01 1749 aa27.01■■□□□ 1.91
PRPF40A-209ENST00000486100 AHDC1Q5TGY3 1603 aaPredicted RBP27.01■■□□□ 1.91
PRPF40A-209ENST00000486100 RGS17Q9UGC6 210 aaPredicted RBP27■■□□□ 1.91
PRPF40A-209ENST00000486100 COL16A1Q07092 1604 aaPredicted RBP26.99■■□□□ 1.91
PRPF40A-209ENST00000486100 CFAP70Q5T0N1 1121 aa26.98■■□□□ 1.91
PRPF40A-209ENST00000486100 WAPLQ7Z5K2 1190 aa26.98■■□□□ 1.91
PRPF40A-209ENST00000486100 ASXL1Q8IXJ9 1541 aa26.98■■□□□ 1.91
PRPF40A-209ENST00000486100 C1orf167Q5SNV9 1468 aa26.98■■□□□ 1.91
PRPF40A-209ENST00000486100 NRXN1Q9ULB1 1477 aa26.98■■□□□ 1.91
PRPF40A-209ENST00000486100 TECPR2O15040 1411 aa26.98■■□□□ 1.91
PRPF40A-209ENST00000486100 NALCNQ8IZF0 1738 aa26.97■■□□□ 1.91
PRPF40A-209ENST00000486100 MYOM2P54296 1465 aa26.97■■□□□ 1.91
PRPF40A-209ENST00000486100 SPATA31A6Q5VVP1 1343 aa26.96■■□□□ 1.91
PRPF40A-209ENST00000486100 SIRT1Q96EB6 747 aa26.96■■□□□ 1.91
PRPF40A-209ENST00000486100 YTHDC2Q9H6S0 1430 aaKnown RBP26.94■■□□□ 1.9
PRPF40A-209ENST00000486100 LRRC59Q96AG4 307 aaKnown RBP26.94■■□□□ 1.9
PRPF40A-209ENST00000486100 DDX17Q92841 729 aaKnown RBP26.93■■□□□ 1.9
PRPF40A-209ENST00000486100 STAC3Q96MF2 364 aa26.93■■□□□ 1.9
PRPF40A-209ENST00000486100 ORAI2Q96SN7 254 aa26.93■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms