RNA–Protein interactions for RNA: ENST00000485985.1

LMBR1-217, Transcript of limb development membrane protein 1, humanhuman

TSL 2

Gene LMBR1, Length 644 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMBR1-217ENST00000485985 SLC26A8Q96RN1 970 aa32.07■■■□□ 2.72
LMBR1-217ENST00000485985 SLC52A1Q9NWF4 448 aa32.06■■■□□ 2.72
LMBR1-217ENST00000485985 TMEM94Q12767 1356 aa32.05■■■□□ 2.72
LMBR1-217ENST00000485985 FAM135BQ49AJ0 1406 aa32.03■■■□□ 2.72
LMBR1-217ENST00000485985 ITGAEP38570 1179 aa32■■■□□ 2.71
LMBR1-217ENST00000485985 PROSER2Q86WR7 435 aaPredicted RBP32■■■□□ 2.71
LMBR1-217ENST00000485985 TMEM131LA2VDJ0 1609 aa31.99■■■□□ 2.71
LMBR1-217ENST00000485985 RBM33Q96EV2 1170 aaKnown RBP31.96■■■□□ 2.71
LMBR1-217ENST00000485985 RRBP1Q9P2E9 1410 aaKnown RBP31.96■■■□□ 2.71
LMBR1-217ENST00000485985 BCANQ96GW7 911 aa31.95■■■□□ 2.71
LMBR1-217ENST00000485985 NWD1Q149M9 1564 aa31.94■■■□□ 2.7
LMBR1-217ENST00000485985 NKTRP30414 1462 aaKnown RBP31.93■■■□□ 2.7
LMBR1-217ENST00000485985 RGS17Q9UGC6 210 aaPredicted RBP31.93■■■□□ 2.7
LMBR1-217ENST00000485985 ZFYVE9O95405 1425 aa31.92■■■□□ 2.7
LMBR1-217ENST00000485985 ROBO1Q9Y6N7 1651 aa31.9■■■□□ 2.7
LMBR1-217ENST00000485985 PLEKHG1Q9ULL1 1385 aa31.88■■■□□ 2.69
LMBR1-217ENST00000485985 SPHKAPQ2M3C7 1700 aa31.88■■■□□ 2.69
LMBR1-217ENST00000485985 RIMS2Q9UQ26 1411 aa31.87■■■□□ 2.69
LMBR1-217ENST00000485985 NUP155O75694 1391 aa31.87■■■□□ 2.69
LMBR1-217ENST00000485985 HDGFP51858 240 aaKnown RBP31.87■■■□□ 2.69
LMBR1-217ENST00000485985 MSH6P52701 1360 aa31.85■■■□□ 2.69
LMBR1-217ENST00000485985 PPP1R15AO75807 674 aaPredicted RBP31.85■■■□□ 2.69
LMBR1-217ENST00000485985 CHD2O14647 1828 aaKnown RBP31.84■■■□□ 2.69
LMBR1-217ENST00000485985 SLAIN2Q9P270 581 aa31.8■■■□□ 2.68
LMBR1-217ENST00000485985 TBX22Q9Y458 520 aa31.8■■■□□ 2.68
LMBR1-217ENST00000485985 CHGAP10645 457 aaKnown RBP31.78■■■□□ 2.68
LMBR1-217ENST00000485985 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.78■■■□□ 2.68
LMBR1-217ENST00000485985 NAIPQ13075 1403 aa31.77■■■□□ 2.68
LMBR1-217ENST00000485985 POTEAQ6S8J7 498 aa31.73■■■□□ 2.67
LMBR1-217ENST00000485985 NUTM2DQ5VT03 806 aaPredicted RBP31.71■■■□□ 2.67
LMBR1-217ENST00000485985 ADAMTS13Q76LX8 1427 aa31.71■■■□□ 2.67
LMBR1-217ENST00000485985 NCOA3Q9Y6Q9 1424 aa31.71■■■□□ 2.67
LMBR1-217ENST00000485985 PHLPP1O60346 1717 aa31.71■■■□□ 2.67
LMBR1-217ENST00000485985 CLTCL1P53675 1640 aa31.69■■■□□ 2.66
LMBR1-217ENST00000485985 DIP2AQ14689 1571 aa31.68■■■□□ 2.66
LMBR1-217ENST00000485985 HFM1A2PYH4 1435 aa31.67■■■□□ 2.66
LMBR1-217ENST00000485985 PIK3R4Q99570 1358 aa31.66■■■□□ 2.66
LMBR1-217ENST00000485985 JCADQ9P266 1359 aa31.66■■■□□ 2.66
LMBR1-217ENST00000485985 C14orf37Q86TY3 774 aa31.65■■■□□ 2.66
LMBR1-217ENST00000485985 TRPM2O94759 1503 aa31.65■■■□□ 2.66
LMBR1-217ENST00000485985 NRXN3Q9Y4C0 1643 aa31.64■■■□□ 2.66
LMBR1-217ENST00000485985 KIF1BO60333 1816 aa31.62■■■□□ 2.65
LMBR1-217ENST00000485985 C19orf44Q9H6X5 657 aa31.61■■■□□ 2.65
LMBR1-217ENST00000485985 SIPA1L2Q9P2F8 1722 aaPredicted RBP31.61■■■□□ 2.65
LMBR1-217ENST00000485985 COL16A1Q07092 1604 aaPredicted RBP31.6■■■□□ 2.65
LMBR1-217ENST00000485985 CADPS2Q86UW7 1296 aa31.6■■■□□ 2.65
LMBR1-217ENST00000485985 ATF3P18847 181 aa31.57■■■□□ 2.64
LMBR1-217ENST00000485985 AMOTL2Q9Y2J4 779 aa31.57■■■□□ 2.64
LMBR1-217ENST00000485985 SETBP1Q9Y6X0 1596 aa31.56■■■□□ 2.64
LMBR1-217ENST00000485985 PTPRUQ92729 1446 aa31.55■■■□□ 2.64
LMBR1-217ENST00000485985 NEXMIFQ5QGS0 1516 aa31.54■■■□□ 2.64
LMBR1-217ENST00000485985 XRN1Q8IZH2 1706 aaKnown RBP31.52■■■□□ 2.64
LMBR1-217ENST00000485985 AHDC1Q5TGY3 1603 aaPredicted RBP31.51■■■□□ 2.63
LMBR1-217ENST00000485985 SPATA31A6Q5VVP1 1343 aa31.5■■■□□ 2.63
LMBR1-217ENST00000485985 LRP6O75581 1613 aa31.47■■■□□ 2.63
LMBR1-217ENST00000485985 ZNF326Q5BKZ1 582 aaKnown RBP31.46■■■□□ 2.63
LMBR1-217ENST00000485985 BRINP3Q76B58 766 aa31.45■■■□□ 2.63
LMBR1-217ENST00000485985 TRIM52Q96A61 297 aa31.45■■■□□ 2.63
LMBR1-217ENST00000485985 SHPRHQ149N8 1683 aa31.44■■■□□ 2.62
LMBR1-217ENST00000485985 DCCP43146 1447 aa31.43■■■□□ 2.62
LMBR1-217ENST00000485985 SETD1AO15047 1707 aaKnown RBP31.43■■■□□ 2.62
LMBR1-217ENST00000485985 MEX3CQ5U5Q3 659 aaKnown RBP31.42■■■□□ 2.62
LMBR1-217ENST00000485985 PPLO60437 1756 aa31.41■■■□□ 2.62
LMBR1-217ENST00000485985 METP08581 1390 aa31.4■■■□□ 2.62
LMBR1-217ENST00000485985 ZNF772Q68DY9 489 aaPredicted RBP31.38■■■□□ 2.61
LMBR1-217ENST00000485985 SLC4A1APQ9BWU0 796 aaKnown RBP31.38■■■□□ 2.61
LMBR1-217ENST00000485985 ASXL1Q8IXJ9 1541 aa31.35■■■□□ 2.61
LMBR1-217ENST00000485985 MST1RQ04912 1400 aa31.35■■■□□ 2.61
LMBR1-217ENST00000485985 NALCNQ8IZF0 1738 aa31.32■■■□□ 2.6
LMBR1-217ENST00000485985 NUTM2BA6NNL0 878 aaPredicted RBP31.3■■■□□ 2.6
LMBR1-217ENST00000485985 NUTM2EB1AL46 878 aaPredicted RBP31.3■■■□□ 2.6
LMBR1-217ENST00000485985 FOXD1Q16676 465 aa31.3■■■□□ 2.6
LMBR1-217ENST00000485985 NUTM2AQ8IVF1 878 aaPredicted RBP31.3■■■□□ 2.6
LMBR1-217ENST00000485985 SETD5Q9C0A6 1442 aa31.3■■■□□ 2.6
LMBR1-217ENST00000485985 NHSL1Q5SYE7 1610 aa31.29■■■□□ 2.6
LMBR1-217ENST00000485985 ADGRL3Q9HAR2 1447 aa31.29■■■□□ 2.6
LMBR1-217ENST00000485985 IFT172Q9UG01 1749 aa31.29■■■□□ 2.6
LMBR1-217ENST00000485985 LRRC59Q96AG4 307 aaKnown RBP31.26■■■□□ 2.59
LMBR1-217ENST00000485985 RXRBP28702 533 aa31.23■■■□□ 2.59
LMBR1-217ENST00000485985 DDX17Q92841 729 aaKnown RBP31.21■■■□□ 2.59
LMBR1-217ENST00000485985 VGFO15240 615 aaPredicted RBP31.2■■■□□ 2.59
LMBR1-217ENST00000485985 UPF1Q92900 1129 aaKnown RBP eCLIP31.2■■■□□ 2.59
LMBR1-217ENST00000485985 CCDC144AA2RUR9 1427 aa31.2■■■□□ 2.59
LMBR1-217ENST00000485985 AFF2P51816 1311 aa31.2■■■□□ 2.58
LMBR1-217ENST00000485985 RPGRIP1LQ68CZ1 1315 aa31.19■■■□□ 2.58
LMBR1-217ENST00000485985 SPATA31E1Q6ZUB1 1445 aa31.18■■■□□ 2.58
LMBR1-217ENST00000485985 MPHOSPH9Q99550 1183 aa31.18■■■□□ 2.58
LMBR1-217ENST00000485985 PNPLA6Q8IY17 1366 aa31.17■■■□□ 2.58
LMBR1-217ENST00000485985 PTCH1Q13635 1447 aa31.16■■■□□ 2.58
LMBR1-217ENST00000485985 PRAG1Q86YV5 1406 aa31.15■■■□□ 2.58
LMBR1-217ENST00000485985 C1orf167Q5SNV9 1468 aa31.15■■■□□ 2.58
LMBR1-217ENST00000485985 CDK12Q9NYV4 1490 aaPredicted RBP31.14■■■□□ 2.58
LMBR1-217ENST00000485985 ROBO2Q9HCK4 1378 aa31.13■■■□□ 2.57
LMBR1-217ENST00000485985 C8orf37Q96NL8 207 aa31.11■■■□□ 2.57
LMBR1-217ENST00000485985 LAMC1P11047 1609 aa31.09■■■□□ 2.57
LMBR1-217ENST00000485985 ORAI2Q96SN7 254 aa31.08■■■□□ 2.57
LMBR1-217ENST00000485985 RAB3GAP2Q9H2M9 1393 aa31.07■■■□□ 2.56
LMBR1-217ENST00000485985 QTRT2Q9H974 415 aaKnown RBP31.07■■■□□ 2.56
LMBR1-217ENST00000485985 SOS2Q07890 1332 aaPredicted RBP31.05■■■□□ 2.56
LMBR1-217ENST00000485985 ADGRF5Q8IZF2 1346 aa31.05■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms