RNA–Protein interactions for RNA: ENST00000485610.5

SMARCD3-212, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best)

Gene SMARCD3, Length 1,480 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-212ENST00000485610 PPP1R15AO75807 674 aaPredicted RBP25.45■■□□□ 1.66
SMARCD3-212ENST00000485610 STAC3Q96MF2 364 aa25.44■■□□□ 1.66
SMARCD3-212ENST00000485610 SLIT1O75093 1534 aa25.42■■□□□ 1.66
SMARCD3-212ENST00000485610 ZFYVE9O95405 1425 aa25.41■■□□□ 1.66
SMARCD3-212ENST00000485610 PRAG1Q86YV5 1406 aa25.41■■□□□ 1.66
SMARCD3-212ENST00000485610 RIMS2Q9UQ26 1411 aa25.41■■□□□ 1.66
SMARCD3-212ENST00000485610 KDM2AQ9Y2K7 1162 aa25.41■■□□□ 1.66
SMARCD3-212ENST00000485610 NRXN1Q9ULB1 1477 aa25.4■■□□□ 1.66
SMARCD3-212ENST00000485610 TRPM1Q7Z4N2 1603 aa25.4■■□□□ 1.66
SMARCD3-212ENST00000485610 ARHGAP23Q9P227 1491 aa25.4■■□□□ 1.66
SMARCD3-212ENST00000485610 KIAA1210Q9ULL0 1709 aa25.4■■□□□ 1.66
SMARCD3-212ENST00000485610 TMEM2Q9UHN6 1383 aa25.39■■□□□ 1.66
SMARCD3-212ENST00000485610 THEMISQ8N1K5 641 aaPredicted RBP25.37■■□□□ 1.65
SMARCD3-212ENST00000485610 LAMC1P11047 1609 aa25.37■■□□□ 1.65
SMARCD3-212ENST00000485610 POLR1AO95602 1720 aaPredicted RBP25.35■■□□□ 1.65
SMARCD3-212ENST00000485610 RALGAPBQ86X10 1494 aa25.35■■□□□ 1.65
SMARCD3-212ENST00000485610 PIK3C2GO75747 1445 aa25.34■■□□□ 1.65
SMARCD3-212ENST00000485610 VGFO15240 615 aaPredicted RBP25.34■■□□□ 1.65
SMARCD3-212ENST00000485610 NBPF8Q3BBV2 869 aa25.33■■□□□ 1.65
SMARCD3-212ENST00000485610 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.33■■□□□ 1.65
SMARCD3-212ENST00000485610 ADGRF5Q8IZF2 1346 aa25.32■■□□□ 1.64
SMARCD3-212ENST00000485610 HDGFP51858 240 aaKnown RBP25.31■■□□□ 1.64
SMARCD3-212ENST00000485610 IQGAP1P46940 1657 aa25.31■■□□□ 1.64
SMARCD3-212ENST00000485610 SCAF11Q99590 1463 aaKnown RBP25.29■■□□□ 1.64
SMARCD3-212ENST00000485610 NUTM2DQ5VT03 806 aaPredicted RBP25.29■■□□□ 1.64
SMARCD3-212ENST00000485610 NRXN3Q9Y4C0 1643 aa25.29■■□□□ 1.64
SMARCD3-212ENST00000485610 LMTK3Q96Q04 1460 aa25.29■■□□□ 1.64
SMARCD3-212ENST00000485610 SETBP1Q9Y6X0 1596 aa25.28■■□□□ 1.64
SMARCD3-212ENST00000485610 SETD1AO15047 1707 aaKnown RBP25.27■■□□□ 1.64
SMARCD3-212ENST00000485610 EID1Q9Y6B2 187 aa25.27■■□□□ 1.64
SMARCD3-212ENST00000485610 PLEKHG1Q9ULL1 1385 aa25.24■■□□□ 1.63
SMARCD3-212ENST00000485610 TXNDC2Q86VQ3 553 aa25.23■■□□□ 1.63
SMARCD3-212ENST00000485610 ALKQ9UM73 1620 aa25.23■■□□□ 1.63
SMARCD3-212ENST00000485610 LTKP29376 864 aa25.22■■□□□ 1.63
SMARCD3-212ENST00000485610 ROCK2O75116 1388 aaKnown RBP25.22■■□□□ 1.63
SMARCD3-212ENST00000485610 GPRASP1Q5JY77 1395 aa25.21■■□□□ 1.63
SMARCD3-212ENST00000485610 DIP2AQ14689 1571 aa25.21■■□□□ 1.63
SMARCD3-212ENST00000485610 ANKLE2Q86XL3 938 aa25.19■■□□□ 1.62
SMARCD3-212ENST00000485610 ADGRB1O14514 1584 aa25.18■■□□□ 1.62
SMARCD3-212ENST00000485610 C14orf93Q9H972 538 aaKnown RBP25.18■■□□□ 1.62
SMARCD3-212ENST00000485610 ASXL1Q8IXJ9 1541 aa25.17■■□□□ 1.62
SMARCD3-212ENST00000485610 CFAP70Q5T0N1 1121 aa25.17■■□□□ 1.62
SMARCD3-212ENST00000485610 MED14O60244 1454 aa25.17■■□□□ 1.62
SMARCD3-212ENST00000485610 ADAMTS13Q76LX8 1427 aa25.15■■□□□ 1.62
SMARCD3-212ENST00000485610 NBPF1Q3BBV0 1214 aa25.15■■□□□ 1.62
SMARCD3-212ENST00000485610 STRCQ7RTU9 1775 aa25.13■■□□□ 1.61
SMARCD3-212ENST00000485610 CARD11Q9BXL7 1154 aa25.13■■□□□ 1.61
SMARCD3-212ENST00000485610 NPHP4O75161 1426 aaPredicted RBP25.12■■□□□ 1.61
SMARCD3-212ENST00000485610 SENP3Q9H4L4 574 aaPredicted RBP25.12■■□□□ 1.61
SMARCD3-212ENST00000485610 HSPA2P54652 639 aa25.11■■□□□ 1.61
SMARCD3-212ENST00000485610 BCANQ96GW7 911 aa25.11■■□□□ 1.61
SMARCD3-212ENST00000485610 KNDC1Q76NI1 1749 aa25.1■■□□□ 1.61
SMARCD3-212ENST00000485610 ARHGEF28Q8N1W1 1705 aaKnown RBP25.1■■□□□ 1.61
SMARCD3-212ENST00000485610 USP47Q96K76 1375 aa25.08■■□□□ 1.61
SMARCD3-212ENST00000485610 NCKAP5LQ9HCH0 1330 aa25.07■■□□□ 1.6
SMARCD3-212ENST00000485610 YTHDC2Q9H6S0 1430 aaKnown RBP25.04■■□□□ 1.6
SMARCD3-212ENST00000485610 EIF4G2P78344 907 aaKnown RBP eCLIP25.04■■□□□ 1.6
SMARCD3-212ENST00000485610 TBX22Q9Y458 520 aa25.04■■□□□ 1.6
SMARCD3-212ENST00000485610 CHD2O14647 1828 aaKnown RBP25.04■■□□□ 1.6
SMARCD3-212ENST00000485610 TMEM132EQ6IEE7 984 aa25.03■■□□□ 1.6
SMARCD3-212ENST00000485610 METP08581 1390 aa25.03■■□□□ 1.6
SMARCD3-212ENST00000485610 EIF3AQ14152 1382 aaKnown RBP25.03■■□□□ 1.6
SMARCD3-212ENST00000485610 XRN1Q8IZH2 1706 aaKnown RBP25.03■■□□□ 1.6
SMARCD3-212ENST00000485610 SLC26A8Q96RN1 970 aa25.02■■□□□ 1.6
SMARCD3-212ENST00000485610 LRPPRCP42704 1394 aaKnown RBP25.02■■□□□ 1.6
SMARCD3-212ENST00000485610 DLC1Q96QB1 1528 aa25.01■■□□□ 1.59
SMARCD3-212ENST00000485610 PIK3R4Q99570 1358 aa25.01■■□□□ 1.59
SMARCD3-212ENST00000485610 CPS1P31327 1500 aa25.01■■□□□ 1.59
SMARCD3-212ENST00000485610 QRICH2Q9H0J4 1663 aa25■■□□□ 1.59
SMARCD3-212ENST00000485610 HSPA5P11021 654 aaKnown RBP24.99■■□□□ 1.59
SMARCD3-212ENST00000485610 TECPR2O15040 1411 aa24.98■■□□□ 1.59
SMARCD3-212ENST00000485610 NWD1Q149M9 1564 aa24.96■■□□□ 1.59
SMARCD3-212ENST00000485610 ABCC11Q96J66 1382 aa24.96■■□□□ 1.59
SMARCD3-212ENST00000485610 PTPRUQ92729 1446 aa24.95■■□□□ 1.58
SMARCD3-212ENST00000485610 TRAK1Q9UPV9 953 aa24.95■■□□□ 1.58
SMARCD3-212ENST00000485610 STK26Q9P289 416 aa24.94■■□□□ 1.58
SMARCD3-212ENST00000485610 AEBP2Q6ZN18 517 aaPredicted RBP24.93■■□□□ 1.58
SMARCD3-212ENST00000485610 PTCH1Q13635 1447 aa24.92■■□□□ 1.58
SMARCD3-212ENST00000485610 ST20-MTHFSA0A0A6YYL1 179 aa24.91■■□□□ 1.58
SMARCD3-212ENST00000485610 FAM135BQ49AJ0 1406 aa24.9■■□□□ 1.58
SMARCD3-212ENST00000485610 CENPJQ9HC77 1338 aaPredicted RBP24.9■■□□□ 1.58
SMARCD3-212ENST00000485610 HIRIP3Q9BW71 556 aaPredicted RBP24.89■■□□□ 1.57
SMARCD3-212ENST00000485610 SBNO2Q9Y2G9 1366 aa24.88■■□□□ 1.57
SMARCD3-212ENST00000485610 STRCP1A6NGW2 1772 aa24.87■■□□□ 1.57
SMARCD3-212ENST00000485610 ZNF316A6NFI3 1004 aaPredicted RBP24.87■■□□□ 1.57
SMARCD3-212ENST00000485610 AMOTL2Q9Y2J4 779 aa24.87■■□□□ 1.57
SMARCD3-212ENST00000485610 SIRT1Q96EB6 747 aa24.86■■□□□ 1.57
SMARCD3-212ENST00000485610 DMRT2Q9Y5R5 561 aa24.86■■□□□ 1.57
SMARCD3-212ENST00000485610 NKTRP30414 1462 aaKnown RBP24.85■■□□□ 1.57
SMARCD3-212ENST00000485610 ROBO2Q9HCK4 1378 aa24.85■■□□□ 1.57
SMARCD3-212ENST00000485610 PRAM1Q96QH2 718 aa24.83■■□□□ 1.57
SMARCD3-212ENST00000485610 TESK2Q96S53 571 aa24.83■■□□□ 1.57
SMARCD3-212ENST00000485610 POGKQ9P215 609 aa24.83■■□□□ 1.57
SMARCD3-212ENST00000485610 KCNA6P17658 529 aa24.83■■□□□ 1.56
SMARCD3-212ENST00000485610 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.81■■□□□ 1.56
SMARCD3-212ENST00000485610 PLEKHH1Q9ULM0 1364 aa24.81■■□□□ 1.56
SMARCD3-212ENST00000485610 ADGRB2O60241 1585 aa24.81■■□□□ 1.56
SMARCD3-212ENST00000485610 SLC24A1O60721 1099 aa24.79■■□□□ 1.56
SMARCD3-212ENST00000485610 NALCNQ8IZF0 1738 aa24.78■■□□□ 1.56
SMARCD3-212ENST00000485610 TULP4Q9NRJ4 1543 aa24.77■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms