RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 RBM33Q96EV2 1170 aaKnown RBP21.54■■□□□ 1.04
SQSTM1-208ENST00000485412 ANKRD50Q9ULJ7 1429 aa21.54■■□□□ 1.04
SQSTM1-208ENST00000485412 NWD1Q149M9 1564 aa21.53■■□□□ 1.04
SQSTM1-208ENST00000485412 NKTRP30414 1462 aaKnown RBP21.53■■□□□ 1.04
SQSTM1-208ENST00000485412 UNC13BO14795 1591 aa21.52■■□□□ 1.04
SQSTM1-208ENST00000485412 MSH6P52701 1360 aa21.51■■□□□ 1.03
SQSTM1-208ENST00000485412 POTEAQ6S8J7 498 aa21.51■■□□□ 1.03
SQSTM1-208ENST00000485412 PHLPP1O60346 1717 aa21.51■■□□□ 1.03
SQSTM1-208ENST00000485412 E9PCH4 1651 aa21.5■■□□□ 1.03
SQSTM1-208ENST00000485412 TMEM131LA2VDJ0 1609 aa21.49■■□□□ 1.03
SQSTM1-208ENST00000485412 SLC52A1Q9NWF4 448 aa21.49■■□□□ 1.03
SQSTM1-208ENST00000485412 RPRD2Q5VT52 1461 aaKnown RBP21.48■■□□□ 1.03
SQSTM1-208ENST00000485412 ZFYVE9O95405 1425 aa21.47■■□□□ 1.03
SQSTM1-208ENST00000485412 CHD2O14647 1828 aaKnown RBP21.46■■□□□ 1.03
SQSTM1-208ENST00000485412 PPP1R15AO75807 674 aaPredicted RBP21.45■■□□□ 1.02
SQSTM1-208ENST00000485412 SLAIN2Q9P270 581 aa21.44■■□□□ 1.02
SQSTM1-208ENST00000485412 SETD1AO15047 1707 aaKnown RBP21.43■■□□□ 1.02
SQSTM1-208ENST00000485412 JCADQ9P266 1359 aa21.43■■□□□ 1.02
SQSTM1-208ENST00000485412 IQGAP3Q86VI3 1631 aa21.43■■□□□ 1.02
SQSTM1-208ENST00000485412 HDGFP51858 240 aaKnown RBP21.42■■□□□ 1.02
SQSTM1-208ENST00000485412 PLEKHG1Q9ULL1 1385 aa21.42■■□□□ 1.02
SQSTM1-208ENST00000485412 RIMS2Q9UQ26 1411 aa21.41■■□□□ 1.02
SQSTM1-208ENST00000485412 COL16A1Q07092 1604 aaPredicted RBP21.38■■□□□ 1.01
SQSTM1-208ENST00000485412 C14orf37Q86TY3 774 aa21.38■■□□□ 1.01
SQSTM1-208ENST00000485412 PPARGC1BQ86YN6 1023 aaKnown RBP21.38■■□□□ 1.01
SQSTM1-208ENST00000485412 CHGAP10645 457 aaKnown RBP21.36■■□□□ 1.01
SQSTM1-208ENST00000485412 NUTM2DQ5VT03 806 aaPredicted RBP21.36■■□□□ 1.01
SQSTM1-208ENST00000485412 ROCK1Q13464 1354 aa21.36■■□□□ 1.01
SQSTM1-208ENST00000485412 ITGAEP38570 1179 aa21.34■■□□□ 1.01
SQSTM1-208ENST00000485412 MEX3CQ5U5Q3 659 aaKnown RBP21.34■■□□□ 1.01
SQSTM1-208ENST00000485412 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.34■■□□□ 1.01
SQSTM1-208ENST00000485412 TBX22Q9Y458 520 aa21.34■■□□□ 1.01
SQSTM1-208ENST00000485412 ADAMTS13Q76LX8 1427 aa21.34■■□□□ 1.01
SQSTM1-208ENST00000485412 NCOA3Q9Y6Q9 1424 aa21.34■■□□□ 1.01
SQSTM1-208ENST00000485412 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.32■■□□□ 1
SQSTM1-208ENST00000485412 DIP2AQ14689 1571 aa21.32■■□□□ 1
SQSTM1-208ENST00000485412 SPATA31A6Q5VVP1 1343 aa21.3■■□□□ 1
SQSTM1-208ENST00000485412 SPHKAPQ2M3C7 1700 aa21.3■■□□□ 1
SQSTM1-208ENST00000485412 ATF3P18847 181 aa21.3■■□□□ 1
SQSTM1-208ENST00000485412 LRP6O75581 1613 aa21.29■■□□□ 1
SQSTM1-208ENST00000485412 AHDC1Q5TGY3 1603 aaPredicted RBP21.29■■□□□ 1
SQSTM1-208ENST00000485412 SHPRHQ149N8 1683 aa21.29■■□□□ 1
SQSTM1-208ENST00000485412 NUP155O75694 1391 aa21.29■■□□□ 1
SQSTM1-208ENST00000485412 CADPS2Q86UW7 1296 aa21.29■■□□□ 1
SQSTM1-208ENST00000485412 NRXN3Q9Y4C0 1643 aa21.29■■□□□ 1
SQSTM1-208ENST00000485412 PIK3R4Q99570 1358 aa21.27■■□□□ 1
SQSTM1-208ENST00000485412 ZNF772Q68DY9 489 aaPredicted RBP21.27■■□□□ 1
SQSTM1-208ENST00000485412 C19orf44Q9H6X5 657 aa21.27■■□□□ 1
SQSTM1-208ENST00000485412 TRPM2O94759 1503 aa21.26■□□□□ 0.99
SQSTM1-208ENST00000485412 PTPRUQ92729 1446 aa21.25■□□□□ 0.99
SQSTM1-208ENST00000485412 TRIM52Q96A61 297 aa21.25■□□□□ 0.99
SQSTM1-208ENST00000485412 XRN1Q8IZH2 1706 aaKnown RBP21.21■□□□□ 0.99
SQSTM1-208ENST00000485412 AMOTL2Q9Y2J4 779 aa21.21■□□□□ 0.99
SQSTM1-208ENST00000485412 CLTCL1P53675 1640 aa21.21■□□□□ 0.99
SQSTM1-208ENST00000485412 NUTM2BA6NNL0 878 aaPredicted RBP21.19■□□□□ 0.98
SQSTM1-208ENST00000485412 NUTM2EB1AL46 878 aaPredicted RBP21.19■□□□□ 0.98
SQSTM1-208ENST00000485412 BRINP3Q76B58 766 aa21.19■□□□□ 0.98
SQSTM1-208ENST00000485412 NUTM2AQ8IVF1 878 aaPredicted RBP21.19■□□□□ 0.98
SQSTM1-208ENST00000485412 UPF1Q92900 1129 aaKnown RBP eCLIP21.19■□□□□ 0.98
SQSTM1-208ENST00000485412 SETBP1Q9Y6X0 1596 aa21.19■□□□□ 0.98
SQSTM1-208ENST00000485412 RXRBP28702 533 aa21.17■□□□□ 0.98
SQSTM1-208ENST00000485412 DCCP43146 1447 aa21.17■□□□□ 0.98
SQSTM1-208ENST00000485412 ASXL1Q8IXJ9 1541 aa21.16■□□□□ 0.98
SQSTM1-208ENST00000485412 NEXMIFQ5QGS0 1516 aa21.14■□□□□ 0.98
SQSTM1-208ENST00000485412 NHSL1Q5SYE7 1610 aa21.14■□□□□ 0.97
SQSTM1-208ENST00000485412 KIF1BO60333 1816 aa21.13■□□□□ 0.97
SQSTM1-208ENST00000485412 RRBP1Q9P2E9 1410 aaKnown RBP21.12■□□□□ 0.97
SQSTM1-208ENST00000485412 METP08581 1390 aa21.12■□□□□ 0.97
SQSTM1-208ENST00000485412 NALCNQ8IZF0 1738 aa21.12■□□□□ 0.97
SQSTM1-208ENST00000485412 NAIPQ13075 1403 aa21.12■□□□□ 0.97
SQSTM1-208ENST00000485412 AFF2P51816 1311 aa21.11■□□□□ 0.97
SQSTM1-208ENST00000485412 ZNF326Q5BKZ1 582 aaKnown RBP21.11■□□□□ 0.97
SQSTM1-208ENST00000485412 CDK12Q9NYV4 1490 aaPredicted RBP21.11■□□□□ 0.97
SQSTM1-208ENST00000485412 MST1RQ04912 1400 aa21.11■□□□□ 0.97
SQSTM1-208ENST00000485412 SETD5Q9C0A6 1442 aa21.11■□□□□ 0.97
SQSTM1-208ENST00000485412 LRRC59Q96AG4 307 aaKnown RBP21.08■□□□□ 0.97
SQSTM1-208ENST00000485412 C8orf37Q96NL8 207 aa21.06■□□□□ 0.96
SQSTM1-208ENST00000485412 ADGRL3Q9HAR2 1447 aa21.05■□□□□ 0.96
SQSTM1-208ENST00000485412 DDX17Q92841 729 aaKnown RBP21.03■□□□□ 0.96
SQSTM1-208ENST00000485412 PNPLA6Q8IY17 1366 aa21.02■□□□□ 0.96
SQSTM1-208ENST00000485412 QTRT2Q9H974 415 aaKnown RBP21.02■□□□□ 0.96
SQSTM1-208ENST00000485412 PPLO60437 1756 aa21.01■□□□□ 0.95
SQSTM1-208ENST00000485412 RBM6P78332 1123 aaKnown RBP21.01■□□□□ 0.95
SQSTM1-208ENST00000485412 RGS12O14924 1447 aa21.01■□□□□ 0.95
SQSTM1-208ENST00000485412 HFM1A2PYH4 1435 aa20.98■□□□□ 0.95
SQSTM1-208ENST00000485412 ADAMTS2O95450 1211 aa20.97■□□□□ 0.95
SQSTM1-208ENST00000485412 NGLY1Q96IV0 654 aa20.97■□□□□ 0.95
SQSTM1-208ENST00000485412 C1orf167Q5SNV9 1468 aa20.96■□□□□ 0.95
SQSTM1-208ENST00000485412 ROBO2Q9HCK4 1378 aa20.96■□□□□ 0.95
SQSTM1-208ENST00000485412 LAMC1P11047 1609 aa20.94■□□□□ 0.94
SQSTM1-208ENST00000485412 FOXD1Q16676 465 aa20.93■□□□□ 0.94
SQSTM1-208ENST00000485412 PTCH1Q13635 1447 aa20.93■□□□□ 0.94
SQSTM1-208ENST00000485412 SLC4A1APQ9BWU0 796 aaKnown RBP20.91■□□□□ 0.94
SQSTM1-208ENST00000485412 ATAD2Q6PL18 1390 aa20.9■□□□□ 0.94
SQSTM1-208ENST00000485412 USP21Q9UK80 565 aa20.9■□□□□ 0.94
SQSTM1-208ENST00000485412 IFT172Q9UG01 1749 aa20.9■□□□□ 0.94
SQSTM1-208ENST00000485412 SOS2Q07890 1332 aaPredicted RBP20.89■□□□□ 0.93
SQSTM1-208ENST00000485412 ORAI2Q96SN7 254 aa20.89■□□□□ 0.93
SQSTM1-208ENST00000485412 VGFO15240 615 aaPredicted RBP20.88■□□□□ 0.93
SQSTM1-208ENST00000485412 TRPC5Q9UL62 973 aaPredicted RBP20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms