RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 A2ML1A8K2U0 1454 aa11.85□□□□□ -0.51
USP4-210ENST00000483212 NRXN1Q9ULB1 1477 aa11.85□□□□□ -0.51
USP4-210ENST00000483212 RGL3Q3MIN7 710 aa11.85□□□□□ -0.51
USP4-210ENST00000483212 PPLO60437 1756 aa11.84□□□□□ -0.51
USP4-210ENST00000483212 NLRP1Q9C000 1473 aa11.84□□□□□ -0.51
USP4-210ENST00000483212 DCAF11Q8TEB1 546 aa11.84□□□□□ -0.51
USP4-210ENST00000483212 MYO5BQ9ULV0 1848 aa11.83□□□□□ -0.51
USP4-210ENST00000483212 PTPRMP28827 1452 aa11.83□□□□□ -0.52
USP4-210ENST00000483212 MYO3AQ8NEV4 1616 aa11.83□□□□□ -0.52
USP4-210ENST00000483212 UBR1Q8IWV7 1749 aa11.83□□□□□ -0.52
USP4-210ENST00000483212 RALGAPBQ86X10 1494 aa11.83□□□□□ -0.52
USP4-210ENST00000483212 STAC3Q96MF2 364 aa11.82□□□□□ -0.52
USP4-210ENST00000483212 RPGRIP1LQ68CZ1 1315 aa11.82□□□□□ -0.52
USP4-210ENST00000483212 TRPM1Q7Z4N2 1603 aa11.82□□□□□ -0.52
USP4-210ENST00000483212 ZFYVE9O95405 1425 aa11.81□□□□□ -0.52
USP4-210ENST00000483212 SCAF1Q9H7N4 1312 aaKnown RBP11.81□□□□□ -0.52
USP4-210ENST00000483212 CHGAP10645 457 aaKnown RBP11.8□□□□□ -0.52
USP4-210ENST00000483212 KDM2AQ9Y2K7 1162 aa11.8□□□□□ -0.52
USP4-210ENST00000483212 ADGRF5Q8IZF2 1346 aa11.8□□□□□ -0.52
USP4-210ENST00000483212 PIK3C2GO75747 1445 aa11.79□□□□□ -0.52
USP4-210ENST00000483212 ZNF142P52746 1687 aaPredicted RBP11.79□□□□□ -0.52
USP4-210ENST00000483212 GPRASP1Q5JY77 1395 aa11.79□□□□□ -0.52
USP4-210ENST00000483212 KIAA1210Q9ULL0 1709 aa11.78□□□□□ -0.52
USP4-210ENST00000483212 KDM4FA0A1W2PPD8 638 aa11.78□□□□□ -0.52
USP4-210ENST00000483212 CEP170BQ9Y4F5 1589 aaPredicted RBP11.78□□□□□ -0.52
USP4-210ENST00000483212 LAMC1P11047 1609 aa11.78□□□□□ -0.52
USP4-210ENST00000483212 ARHGAP23Q9P227 1491 aa11.77□□□□□ -0.52
USP4-210ENST00000483212 SLIT1O75093 1534 aa11.77□□□□□ -0.52
USP4-210ENST00000483212 ZNF326Q5BKZ1 582 aaKnown RBP11.77□□□□□ -0.53
USP4-210ENST00000483212 RIMS2Q9UQ26 1411 aa11.77□□□□□ -0.53
USP4-210ENST00000483212 TMEM2Q9UHN6 1383 aa11.76□□□□□ -0.53
USP4-210ENST00000483212 ADGRB1O14514 1584 aa11.75□□□□□ -0.53
USP4-210ENST00000483212 NBPF1Q3BBV0 1214 aa11.74□□□□□ -0.53
USP4-210ENST00000483212 NRXN3Q9Y4C0 1643 aa11.74□□□□□ -0.53
USP4-210ENST00000483212 VGFO15240 615 aaPredicted RBP11.73□□□□□ -0.53
USP4-210ENST00000483212 ASXL1Q8IXJ9 1541 aa11.73□□□□□ -0.53
USP4-210ENST00000483212 STAG3Q9UJ98 1225 aa11.73□□□□□ -0.53
USP4-210ENST00000483212 SETBP1Q9Y6X0 1596 aa11.73□□□□□ -0.53
USP4-210ENST00000483212 ROCK2O75116 1388 aaKnown RBP11.72□□□□□ -0.53
USP4-210ENST00000483212 CFAP70Q5T0N1 1121 aa11.72□□□□□ -0.53
USP4-210ENST00000483212 NUTM2DQ5VT03 806 aaPredicted RBP11.72□□□□□ -0.53
USP4-210ENST00000483212 C14orf93Q9H972 538 aaKnown RBP11.72□□□□□ -0.53
USP4-210ENST00000483212 SETD1AO15047 1707 aaKnown RBP11.72□□□□□ -0.53
USP4-210ENST00000483212 IQGAP1P46940 1657 aa11.71□□□□□ -0.53
USP4-210ENST00000483212 SETD1BQ9UPS6 1966 aaKnown RBP11.71□□□□□ -0.53
USP4-210ENST00000483212 USP47Q96K76 1375 aa11.7□□□□□ -0.54
USP4-210ENST00000483212 ZNF316A6NFI3 1004 aaPredicted RBP11.7□□□□□ -0.54
USP4-210ENST00000483212 HSPA5P11021 654 aaKnown RBP11.7□□□□□ -0.54
USP4-210ENST00000483212 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.7□□□□□ -0.54
USP4-210ENST00000483212 CARD11Q9BXL7 1154 aa11.7□□□□□ -0.54
USP4-210ENST00000483212 ALKQ9UM73 1620 aa11.7□□□□□ -0.54
USP4-210ENST00000483212 PLEKHG1Q9ULL1 1385 aa11.69□□□□□ -0.54
USP4-210ENST00000483212 LTKP29376 864 aa11.69□□□□□ -0.54
USP4-210ENST00000483212 THEMISQ8N1K5 641 aaPredicted RBP11.69□□□□□ -0.54
USP4-210ENST00000483212 MED14O60244 1454 aa11.69□□□□□ -0.54
USP4-210ENST00000483212 SCAF11Q99590 1463 aaKnown RBP11.69□□□□□ -0.54
USP4-210ENST00000483212 ADAMTS13Q76LX8 1427 aa11.69□□□□□ -0.54
USP4-210ENST00000483212 EIF4G2P78344 907 aaKnown RBP eCLIP11.68□□□□□ -0.54
USP4-210ENST00000483212 HDGFP51858 240 aaKnown RBP11.66□□□□□ -0.54
USP4-210ENST00000483212 HIRIP3Q9BW71 556 aaPredicted RBP11.66□□□□□ -0.54
USP4-210ENST00000483212 LMTK3Q96Q04 1460 aa11.65□□□□□ -0.54
USP4-210ENST00000483212 TXNDC2Q86VQ3 553 aa11.65□□□□□ -0.54
USP4-210ENST00000483212 DIP2AQ14689 1571 aa11.64□□□□□ -0.55
USP4-210ENST00000483212 TMEM132EQ6IEE7 984 aa11.63□□□□□ -0.55
USP4-210ENST00000483212 TESK2Q96S53 571 aa11.63□□□□□ -0.55
USP4-210ENST00000483212 EID1Q9Y6B2 187 aa11.63□□□□□ -0.55
USP4-210ENST00000483212 METP08581 1390 aa11.63□□□□□ -0.55
USP4-210ENST00000483212 ARHGEF28Q8N1W1 1705 aaKnown RBP11.63□□□□□ -0.55
USP4-210ENST00000483212 YTHDC2Q9H6S0 1430 aaKnown RBP11.62□□□□□ -0.55
USP4-210ENST00000483212 DLC1Q96QB1 1528 aa11.62□□□□□ -0.55
USP4-210ENST00000483212 ST20-MTHFSA0A0A6YYL1 179 aa11.62□□□□□ -0.55
USP4-210ENST00000483212 PPP4R3CPQ6ZMV5 832 aa11.62□□□□□ -0.55
USP4-210ENST00000483212 POLR1AO95602 1720 aaPredicted RBP11.62□□□□□ -0.55
USP4-210ENST00000483212 LRPPRCP42704 1394 aaKnown RBP11.62□□□□□ -0.55
USP4-210ENST00000483212 TECPR2O15040 1411 aa11.61□□□□□ -0.55
USP4-210ENST00000483212 KNDC1Q76NI1 1749 aa11.61□□□□□ -0.55
USP4-210ENST00000483212 C11orf95C9JLR9 678 aaPredicted RBP11.61□□□□□ -0.55
USP4-210ENST00000483212 EIF3AQ14152 1382 aaKnown RBP11.6□□□□□ -0.55
USP4-210ENST00000483212 SBNO2Q9Y2G9 1366 aa11.6□□□□□ -0.55
USP4-210ENST00000483212 ANKLE2Q86XL3 938 aa11.6□□□□□ -0.55
USP4-210ENST00000483212 CPS1P31327 1500 aa11.6□□□□□ -0.55
USP4-210ENST00000483212 NPHP4O75161 1426 aaPredicted RBP11.6□□□□□ -0.55
USP4-210ENST00000483212 PTPRUQ92729 1446 aa11.6□□□□□ -0.55
USP4-210ENST00000483212 ABCC11Q96J66 1382 aa11.59□□□□□ -0.55
USP4-210ENST00000483212 TBX22Q9Y458 520 aa11.59□□□□□ -0.55
USP4-210ENST00000483212 WASHC2AQ641Q2 1341 aa11.59□□□□□ -0.55
USP4-210ENST00000483212 XRN1Q8IZH2 1706 aaKnown RBP11.58□□□□□ -0.56
USP4-210ENST00000483212 CCDC7Q96M83 1385 aa11.58□□□□□ -0.56
USP4-210ENST00000483212 TRAK1Q9UPV9 953 aa11.58□□□□□ -0.56
USP4-210ENST00000483212 QRICH2Q9H0J4 1663 aa11.58□□□□□ -0.56
USP4-210ENST00000483212 PIK3R4Q99570 1358 aa11.57□□□□□ -0.56
USP4-210ENST00000483212 SLC26A8Q96RN1 970 aa11.57□□□□□ -0.56
USP4-210ENST00000483212 KIF7Q2M1P5 1343 aa11.57□□□□□ -0.56
USP4-210ENST00000483212 CENPJQ9HC77 1338 aaPredicted RBP11.57□□□□□ -0.56
USP4-210ENST00000483212 NCKAP5LQ9HCH0 1330 aa11.57□□□□□ -0.56
USP4-210ENST00000483212 DISP3Q9P2K9 1392 aa11.56□□□□□ -0.56
USP4-210ENST00000483212 FAM135BQ49AJ0 1406 aa11.56□□□□□ -0.56
USP4-210ENST00000483212 PTCH1Q13635 1447 aa11.55□□□□□ -0.56
USP4-210ENST00000483212 STRCQ7RTU9 1775 aa11.55□□□□□ -0.56
USP4-210ENST00000483212 HSPA2P54652 639 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms