RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 RIMS2Q9UQ26 1411 aa17.63■□□□□ 0.41
SDC1-206ENST00000482879 HDGFP51858 240 aaKnown RBP17.62■□□□□ 0.41
SDC1-206ENST00000482879 NUTM2DQ5VT03 806 aaPredicted RBP17.62■□□□□ 0.41
SDC1-206ENST00000482879 IFT172Q9UG01 1749 aa17.61■□□□□ 0.41
SDC1-206ENST00000482879 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.61■□□□□ 0.41
SDC1-206ENST00000482879 LMTK3Q96Q04 1460 aa17.61■□□□□ 0.41
SDC1-206ENST00000482879 NEXMIFQ5QGS0 1516 aa17.61■□□□□ 0.41
SDC1-206ENST00000482879 HSPA2P54652 639 aa17.6■□□□□ 0.41
SDC1-206ENST00000482879 EID1Q9Y6B2 187 aa17.6■□□□□ 0.41
SDC1-206ENST00000482879 SLIT1O75093 1534 aa17.6■□□□□ 0.41
SDC1-206ENST00000482879 ARHGAP23Q9P227 1491 aa17.59■□□□□ 0.41
SDC1-206ENST00000482879 ZFYVE9O95405 1425 aa17.59■□□□□ 0.41
SDC1-206ENST00000482879 VGFO15240 615 aaPredicted RBP17.59■□□□□ 0.41
SDC1-206ENST00000482879 PPP1R15AO75807 674 aaPredicted RBP17.59■□□□□ 0.41
SDC1-206ENST00000482879 TXNDC2Q86VQ3 553 aa17.59■□□□□ 0.41
SDC1-206ENST00000482879 STAC3Q96MF2 364 aa17.59■□□□□ 0.41
SDC1-206ENST00000482879 LTKP29376 864 aa17.58■□□□□ 0.4
SDC1-206ENST00000482879 ANKLE2Q86XL3 938 aa17.58■□□□□ 0.4
SDC1-206ENST00000482879 ADGRF5Q8IZF2 1346 aa17.56■□□□□ 0.4
SDC1-206ENST00000482879 ZEB1P37275 1124 aaPredicted RBP17.55■□□□□ 0.4
SDC1-206ENST00000482879 MYOM2P54296 1465 aa17.55■□□□□ 0.4
SDC1-206ENST00000482879 SENP3Q9H4L4 574 aaPredicted RBP17.54■□□□□ 0.4
SDC1-206ENST00000482879 SCAF11Q99590 1463 aaKnown RBP17.54■□□□□ 0.4
SDC1-206ENST00000482879 NCKAP5LQ9HCH0 1330 aa17.53■□□□□ 0.4
SDC1-206ENST00000482879 POLR1AO95602 1720 aaPredicted RBP17.53■□□□□ 0.4
SDC1-206ENST00000482879 BCANQ96GW7 911 aa17.53■□□□□ 0.4
SDC1-206ENST00000482879 NBPF8Q3BBV2 869 aa17.51■□□□□ 0.39
SDC1-206ENST00000482879 NRXN1Q9ULB1 1477 aa17.5■□□□□ 0.39
SDC1-206ENST00000482879 PRAG1Q86YV5 1406 aa17.5■□□□□ 0.39
SDC1-206ENST00000482879 PLEKHG1Q9ULL1 1385 aa17.5■□□□□ 0.39
SDC1-206ENST00000482879 STRCQ7RTU9 1775 aa17.48■□□□□ 0.39
SDC1-206ENST00000482879 PIK3C2GO75747 1445 aa17.48■□□□□ 0.39
SDC1-206ENST00000482879 CFAP70Q5T0N1 1121 aa17.47■□□□□ 0.39
SDC1-206ENST00000482879 IQGAP1P46940 1657 aa17.47■□□□□ 0.39
SDC1-206ENST00000482879 NPHP4O75161 1426 aaPredicted RBP17.47■□□□□ 0.39
SDC1-206ENST00000482879 MED14O60244 1454 aa17.46■□□□□ 0.39
SDC1-206ENST00000482879 C14orf93Q9H972 538 aaKnown RBP17.46■□□□□ 0.39
SDC1-206ENST00000482879 SETBP1Q9Y6X0 1596 aa17.45■□□□□ 0.38
SDC1-206ENST00000482879 SLC26A8Q96RN1 970 aa17.45■□□□□ 0.38
SDC1-206ENST00000482879 NRXN3Q9Y4C0 1643 aa17.45■□□□□ 0.38
SDC1-206ENST00000482879 KIAA1210Q9ULL0 1709 aa17.44■□□□□ 0.38
SDC1-206ENST00000482879 TRPM1Q7Z4N2 1603 aa17.44■□□□□ 0.38
SDC1-206ENST00000482879 ALKQ9UM73 1620 aa17.44■□□□□ 0.38
SDC1-206ENST00000482879 TBX22Q9Y458 520 aa17.43■□□□□ 0.38
SDC1-206ENST00000482879 ADAMTS13Q76LX8 1427 aa17.43■□□□□ 0.38
SDC1-206ENST00000482879 LAMC1P11047 1609 aa17.43■□□□□ 0.38
SDC1-206ENST00000482879 NBPF1Q3BBV0 1214 aa17.42■□□□□ 0.38
SDC1-206ENST00000482879 SETD1AO15047 1707 aaKnown RBP17.41■□□□□ 0.38
SDC1-206ENST00000482879 RALGAPBQ86X10 1494 aa17.4■□□□□ 0.38
SDC1-206ENST00000482879 TMEM132EQ6IEE7 984 aa17.4■□□□□ 0.38
SDC1-206ENST00000482879 DMRT2Q9Y5R5 561 aa17.4■□□□□ 0.38
SDC1-206ENST00000482879 DIP2AQ14689 1571 aa17.4■□□□□ 0.38
SDC1-206ENST00000482879 ROCK2O75116 1388 aaKnown RBP17.4■□□□□ 0.38
SDC1-206ENST00000482879 METP08581 1390 aa17.38■□□□□ 0.37
SDC1-206ENST00000482879 CARD11Q9BXL7 1154 aa17.37■□□□□ 0.37
SDC1-206ENST00000482879 ASXL1Q8IXJ9 1541 aa17.36■□□□□ 0.37
SDC1-206ENST00000482879 STK26Q9P289 416 aa17.35■□□□□ 0.37
SDC1-206ENST00000482879 ADGRB1O14514 1584 aa17.35■□□□□ 0.37
SDC1-206ENST00000482879 CHD2O14647 1828 aaKnown RBP17.35■□□□□ 0.37
SDC1-206ENST00000482879 GPRASP1Q5JY77 1395 aa17.34■□□□□ 0.37
SDC1-206ENST00000482879 PIK3R4Q99570 1358 aa17.34■□□□□ 0.37
SDC1-206ENST00000482879 YTHDC2Q9H6S0 1430 aaKnown RBP17.33■□□□□ 0.36
SDC1-206ENST00000482879 LRPPRCP42704 1394 aaKnown RBP17.32■□□□□ 0.36
SDC1-206ENST00000482879 TRAK1Q9UPV9 953 aa17.32■□□□□ 0.36
SDC1-206ENST00000482879 AMOTL2Q9Y2J4 779 aa17.32■□□□□ 0.36
SDC1-206ENST00000482879 PTPRUQ92729 1446 aa17.31■□□□□ 0.36
SDC1-206ENST00000482879 KCNA6P17658 529 aa17.31■□□□□ 0.36
SDC1-206ENST00000482879 ABCC11Q96J66 1382 aa17.29■□□□□ 0.36
SDC1-206ENST00000482879 KNDC1Q76NI1 1749 aa17.28■□□□□ 0.36
SDC1-206ENST00000482879 XRN1Q8IZH2 1706 aaKnown RBP17.27■□□□□ 0.36
SDC1-206ENST00000482879 STRCP1A6NGW2 1772 aa17.27■□□□□ 0.35
SDC1-206ENST00000482879 USP47Q96K76 1375 aa17.27■□□□□ 0.35
SDC1-206ENST00000482879 EIF4G2P78344 907 aaKnown RBP eCLIP17.26■□□□□ 0.35
SDC1-206ENST00000482879 ARHGEF28Q8N1W1 1705 aaKnown RBP17.26■□□□□ 0.35
SDC1-206ENST00000482879 ZNF335Q9H4Z2 1342 aaPredicted RBP17.25■□□□□ 0.35
SDC1-206ENST00000482879 NWD1Q149M9 1564 aa17.25■□□□□ 0.35
SDC1-206ENST00000482879 TECPR2O15040 1411 aa17.25■□□□□ 0.35
SDC1-206ENST00000482879 SIRT1Q96EB6 747 aa17.25■□□□□ 0.35
SDC1-206ENST00000482879 POGKQ9P215 609 aa17.25■□□□□ 0.35
SDC1-206ENST00000482879 DLC1Q96QB1 1528 aa17.25■□□□□ 0.35
SDC1-206ENST00000482879 EIF3AQ14152 1382 aaKnown RBP17.25■□□□□ 0.35
SDC1-206ENST00000482879 HSPA5P11021 654 aaKnown RBP17.24■□□□□ 0.35
SDC1-206ENST00000482879 WAPLQ7Z5K2 1190 aa17.24■□□□□ 0.35
SDC1-206ENST00000482879 PRAM1Q96QH2 718 aa17.24■□□□□ 0.35
SDC1-206ENST00000482879 CPS1P31327 1500 aa17.24■□□□□ 0.35
SDC1-206ENST00000482879 ROBO2Q9HCK4 1378 aa17.24■□□□□ 0.35
SDC1-206ENST00000482879 PROSER2Q86WR7 435 aaPredicted RBP17.23■□□□□ 0.35
SDC1-206ENST00000482879 PTCH1Q13635 1447 aa17.22■□□□□ 0.35
SDC1-206ENST00000482879 ST20-MTHFSA0A0A6YYL1 179 aa17.22■□□□□ 0.35
SDC1-206ENST00000482879 SAFB2Q14151 953 aaKnown RBP eCLIP17.22■□□□□ 0.35
SDC1-206ENST00000482879 CENPJQ9HC77 1338 aaPredicted RBP17.21■□□□□ 0.35
SDC1-206ENST00000482879 FAM135BQ49AJ0 1406 aa17.21■□□□□ 0.35
SDC1-206ENST00000482879 NKTRP30414 1462 aaKnown RBP17.21■□□□□ 0.35
SDC1-206ENST00000482879 PLEKHH1Q9ULM0 1364 aa17.21■□□□□ 0.35
SDC1-206ENST00000482879 HIRIP3Q9BW71 556 aaPredicted RBP17.2■□□□□ 0.34
SDC1-206ENST00000482879 QRICH2Q9H0J4 1663 aa17.2■□□□□ 0.34
SDC1-206ENST00000482879 RBM33Q96EV2 1170 aaKnown RBP17.19■□□□□ 0.34
SDC1-206ENST00000482879 MINK1Q8N4C8 1332 aaPredicted RBP17.17■□□□□ 0.34
SDC1-206ENST00000482879 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.16■□□□□ 0.34
SDC1-206ENST00000482879 C14orf37Q86TY3 774 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms