RNA–Protein interactions for RNA: ENST00000482558.5

SNX13-208, Transcript of sorting nexin 13, humanhuman

TSL 2

Gene SNX13, Length 1,139 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-208ENST00000482558 FAM198AQ9UFP1 575 aa12.26□□□□□ -0.45
SNX13-208ENST00000482558 ARIH1Q9Y4X5 557 aaPredicted RBP12.26□□□□□ -0.45
SNX13-208ENST00000482558 SMAPO00193 183 aa12.25□□□□□ -0.45
SNX13-208ENST00000482558 PPP1R18Q6NYC8 613 aa12.24□□□□□ -0.45
SNX13-208ENST00000482558 RBM27Q9P2N5 1060 aaKnown RBP12.24□□□□□ -0.45
SNX13-208ENST00000482558 SMARCA2P51531 1590 aa12.22□□□□□ -0.45
SNX13-208ENST00000482558 EIF4G1Q04637 1599 aaKnown RBP12.22□□□□□ -0.45
SNX13-208ENST00000482558 HDGFP51858 240 aaKnown RBP12.22□□□□□ -0.45
SNX13-208ENST00000482558 NECTIN2Q92692 538 aa12.22□□□□□ -0.45
SNX13-208ENST00000482558 PNMA3Q9UL41 463 aa12.22□□□□□ -0.45
SNX13-208ENST00000482558 CCDC88BA6NC98 1476 aa12.21□□□□□ -0.45
SNX13-208ENST00000482558 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.2□□□□□ -0.46
SNX13-208ENST00000482558 WDR70Q9NW82 654 aa12.2□□□□□ -0.46
SNX13-208ENST00000482558 C3orf80F5H4A9 247 aa12.19□□□□□ -0.46
SNX13-208ENST00000482558 PRIM1P49642 420 aaKnown RBP12.19□□□□□ -0.46
SNX13-208ENST00000482558 E2F4Q16254 413 aa12.19□□□□□ -0.46
SNX13-208ENST00000482558 P3H3Q8IVL6 736 aa12.19□□□□□ -0.46
SNX13-208ENST00000482558 PODXL2Q9NZ53 605 aa12.19□□□□□ -0.46
SNX13-208ENST00000482558 GRXCR2A6NFK2 248 aa12.16□□□□□ -0.46
SNX13-208ENST00000482558 APLP1P51693 650 aa12.16□□□□□ -0.46
SNX13-208ENST00000482558 NUDT18Q6ZVK8 323 aa12.16□□□□□ -0.46
SNX13-208ENST00000482558 ZNF516Q92618 1163 aa12.16□□□□□ -0.46
SNX13-208ENST00000482558 ATAD2BQ9ULI0 1458 aa12.14□□□□□ -0.47
SNX13-208ENST00000482558 OSBPP22059 807 aa12.14□□□□□ -0.47
SNX13-208ENST00000482558 GGCXP38435 758 aa12.14□□□□□ -0.47
SNX13-208ENST00000482558 LOC105371045A0A1W2PR82 267 aa12.13□□□□□ -0.47
SNX13-208ENST00000482558 TTC13Q8NBP0 860 aa12.13□□□□□ -0.47
SNX13-208ENST00000482558 RNF40O75150 1001 aa12.12□□□□□ -0.47
SNX13-208ENST00000482558 TMUB1Q9BVT8 246 aa12.12□□□□□ -0.47
SNX13-208ENST00000482558 BAZ1BQ9UIG0 1483 aaKnown RBP12.12□□□□□ -0.47
SNX13-208ENST00000482558 EEA1Q15075 1411 aa12.11□□□□□ -0.47
SNX13-208ENST00000482558 SLF2Q8IX21 1173 aa12.11□□□□□ -0.47
SNX13-208ENST00000482558 CDHR5Q9HBB8 845 aa12.11□□□□□ -0.47
SNX13-208ENST00000482558 PDZRN3Q9UPQ7 1066 aa12.1□□□□□ -0.47
SNX13-208ENST00000482558 NKX2-3Q8TAU0 364 aa12.09□□□□□ -0.47
SNX13-208ENST00000482558 KCNV2Q8TDN2 545 aa12.08□□□□□ -0.48
SNX13-208ENST00000482558 SLC4A3P48751 1232 aa12.07□□□□□ -0.48
SNX13-208ENST00000482558 SWT1Q5T5J6 900 aaKnown RBP12.07□□□□□ -0.48
SNX13-208ENST00000482558 HMGXB3Q12766 1538 aa12.06□□□□□ -0.48
SNX13-208ENST00000482558 PRR14Q9BWN1 585 aa12.06□□□□□ -0.48
SNX13-208ENST00000482558 NPDC1Q9NQX5 325 aaPredicted RBP12.05□□□□□ -0.48
SNX13-208ENST00000482558 NCAPD3P42695 1498 aa12.05□□□□□ -0.48
SNX13-208ENST00000482558 ZPR1O75312 459 aa12.04□□□□□ -0.48
SNX13-208ENST00000482558 ZNF787Q6DD87 383 aa12.04□□□□□ -0.48
SNX13-208ENST00000482558 COPS2P61201 443 aa12.03□□□□□ -0.48
SNX13-208ENST00000482558 PADI6Q6TGC4 694 aa12.03□□□□□ -0.48
SNX13-208ENST00000482558 TRIM26Q12899 539 aaPredicted RBP12.02□□□□□ -0.49
SNX13-208ENST00000482558 EYA1Q99502 592 aa12.01□□□□□ -0.49
SNX13-208ENST00000482558 WRNQ14191 1432 aaPredicted RBP eCLIP11.99□□□□□ -0.49
SNX13-208ENST00000482558 FAM9AQ8IZU1 332 aaPredicted RBP11.98□□□□□ -0.49
SNX13-208ENST00000482558 PCDHB3Q9Y5E6 796 aa11.98□□□□□ -0.49
SNX13-208ENST00000482558 ABCC8Q09428 1581 aa11.97□□□□□ -0.49
SNX13-208ENST00000482558 PCGF6Q9BYE7 350 aa11.97□□□□□ -0.49
SNX13-208ENST00000482558 HRCP23327 699 aa11.95□□□□□ -0.5
SNX13-208ENST00000482558 TRIM67Q6ZTA4 783 aa11.95□□□□□ -0.5
SNX13-208ENST00000482558 ARHGEF1Q92888 912 aaKnown RBP11.95□□□□□ -0.5
SNX13-208ENST00000482558 RNF223E7ERA6 249 aa11.94□□□□□ -0.5
SNX13-208ENST00000482558 SLC19A1P41440 591 aa11.94□□□□□ -0.5
SNX13-208ENST00000482558 PRR20EP86478 221 aa11.92□□□□□ -0.5
SNX13-208ENST00000482558 PRR20CP86479 221 aa11.92□□□□□ -0.5
SNX13-208ENST00000482558 PRR20DP86480 221 aa11.92□□□□□ -0.5
SNX13-208ENST00000482558 PRR20BP86481 221 aa11.92□□□□□ -0.5
SNX13-208ENST00000482558 PRR20AP86496 221 aa11.92□□□□□ -0.5
SNX13-208ENST00000482558 ZNF775Q96BV0 537 aaPredicted RBP11.92□□□□□ -0.5
SNX13-208ENST00000482558 DGAT1O75907 488 aa11.91□□□□□ -0.5
SNX13-208ENST00000482558 DNAJB2P25686 324 aa11.91□□□□□ -0.5
SNX13-208ENST00000482558 BLOC1S3Q6QNY0 202 aa11.91□□□□□ -0.5
SNX13-208ENST00000482558 ANKLE1Q8NAG6 615 aa11.91□□□□□ -0.5
SNX13-208ENST00000482558 TNIKQ9UKE5 1360 aa11.91□□□□□ -0.5
SNX13-208ENST00000482558 SPRYD7Q5W111 196 aa11.9□□□□□ -0.5
SNX13-208ENST00000482558 ZNF598Q86UK7 904 aaKnown RBP11.9□□□□□ -0.5
SNX13-208ENST00000482558 EMID1Q96A84 441 aaPredicted RBP11.9□□□□□ -0.5
SNX13-208ENST00000482558 PKDCCQ504Y2 493 aa11.89□□□□□ -0.51
SNX13-208ENST00000482558 NPM2Q86SE8 214 aaKnown RBP11.89□□□□□ -0.51
SNX13-208ENST00000482558 TMEM134Q9H6X4 195 aa11.88□□□□□ -0.51
SNX13-208ENST00000482558 ACTN4O43707 911 aaKnown RBP11.87□□□□□ -0.51
SNX13-208ENST00000482558 KMT5BQ4FZB7 885 aa11.87□□□□□ -0.51
SNX13-208ENST00000482558 RBM46Q8TBY0 533 aaKnown RBP11.87□□□□□ -0.51
SNX13-208ENST00000482558 GOLGA3Q08378 1498 aa11.87□□□□□ -0.51
SNX13-208ENST00000482558 MYT1Q01538 1121 aa11.86□□□□□ -0.51
SNX13-208ENST00000482558 TOP2BQ02880 1626 aa11.86□□□□□ -0.51
SNX13-208ENST00000482558 SOGA1O94964 1423 aa11.86□□□□□ -0.51
SNX13-208ENST00000482558 CEP164Q9UPV0 1460 aa11.85□□□□□ -0.51
SNX13-208ENST00000482558 PTGDRQ13258 359 aa11.85□□□□□ -0.51
SNX13-208ENST00000482558 SYNJ1O43426 1573 aa11.84□□□□□ -0.51
SNX13-208ENST00000482558 CFTRP13569 1480 aa11.84□□□□□ -0.51
SNX13-208ENST00000482558 TLL1O43897 1013 aa11.84□□□□□ -0.51
SNX13-208ENST00000482558 KIF21BO75037 1637 aa11.83□□□□□ -0.52
SNX13-208ENST00000482558 BIVM-ERCC5R4GMW8 1640 aa11.83□□□□□ -0.52
SNX13-208ENST00000482558 ZEB1P37275 1124 aaPredicted RBP11.83□□□□□ -0.52
SNX13-208ENST00000482558 ADGRG1Q9Y653 693 aa11.83□□□□□ -0.52
SNX13-208ENST00000482558 S1PR4O95977 384 aa11.81□□□□□ -0.52
SNX13-208ENST00000482558 ZNF697Q5TEC3 545 aa11.81□□□□□ -0.52
SNX13-208ENST00000482558 SEMA3EO15041 775 aa11.8□□□□□ -0.52
SNX13-208ENST00000482558 ADH1BP00325 375 aa11.8□□□□□ -0.52
SNX13-208ENST00000482558 LMOD2Q6P5Q4 547 aa11.8□□□□□ -0.52
SNX13-208ENST00000482558 LIAT1Q6ZQX7 453 aa11.8□□□□□ -0.52
SNX13-208ENST00000482558 PRDM2Q13029 1718 aa11.8□□□□□ -0.52
SNX13-208ENST00000482558 CEP162Q5TB80 1403 aa11.79□□□□□ -0.52
SNX13-208ENST00000482558 GDF9O60383 454 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 572.2 ms