RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 PRAG1Q86YV5 1406 aa14.48□□□□□ -0.09
USP39-215ENST00000481409 A2ML1A8K2U0 1454 aa14.47□□□□□ -0.09
USP39-215ENST00000481409 PTPRMP28827 1452 aa14.47□□□□□ -0.09
USP39-215ENST00000481409 NRXN1Q9ULB1 1477 aa14.47□□□□□ -0.09
USP39-215ENST00000481409 KIAA1210Q9ULL0 1709 aa14.46□□□□□ -0.09
USP39-215ENST00000481409 CHGAP10645 457 aaKnown RBP14.46□□□□□ -0.09
USP39-215ENST00000481409 ZNF326Q5BKZ1 582 aaKnown RBP14.46□□□□□ -0.09
USP39-215ENST00000481409 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.46□□□□□ -0.09
USP39-215ENST00000481409 NEXMIFQ5QGS0 1516 aa14.46□□□□□ -0.1
USP39-215ENST00000481409 RALGAPBQ86X10 1494 aa14.45□□□□□ -0.1
USP39-215ENST00000481409 MYO3AQ8NEV4 1616 aa14.45□□□□□ -0.1
USP39-215ENST00000481409 UBR1Q8IWV7 1749 aa14.45□□□□□ -0.1
USP39-215ENST00000481409 CEBPAP49715 358 aaPredicted RBP14.44□□□□□ -0.1
USP39-215ENST00000481409 ZNF142P52746 1687 aaPredicted RBP14.44□□□□□ -0.1
USP39-215ENST00000481409 THEMISQ8N1K5 641 aaPredicted RBP14.43□□□□□ -0.1
USP39-215ENST00000481409 KDM2AQ9Y2K7 1162 aa14.43□□□□□ -0.1
USP39-215ENST00000481409 LAMC1P11047 1609 aa14.43□□□□□ -0.1
USP39-215ENST00000481409 MYO5BQ9ULV0 1848 aa14.43□□□□□ -0.1
USP39-215ENST00000481409 TRPM1Q7Z4N2 1603 aa14.42□□□□□ -0.1
USP39-215ENST00000481409 NBPF8Q3BBV2 869 aa14.42□□□□□ -0.1
USP39-215ENST00000481409 GPRASP1Q5JY77 1395 aa14.42□□□□□ -0.1
USP39-215ENST00000481409 CEP170BQ9Y4F5 1589 aaPredicted RBP14.42□□□□□ -0.1
USP39-215ENST00000481409 SLIT1O75093 1534 aa14.41□□□□□ -0.1
USP39-215ENST00000481409 PIK3C2GO75747 1445 aa14.41□□□□□ -0.1
USP39-215ENST00000481409 TMEM2Q9UHN6 1383 aa14.4□□□□□ -0.1
USP39-215ENST00000481409 RIMS2Q9UQ26 1411 aa14.4□□□□□ -0.1
USP39-215ENST00000481409 SETBP1Q9Y6X0 1596 aa14.39□□□□□ -0.11
USP39-215ENST00000481409 ARHGAP23Q9P227 1491 aa14.39□□□□□ -0.11
USP39-215ENST00000481409 ROCK2O75116 1388 aaKnown RBP14.38□□□□□ -0.11
USP39-215ENST00000481409 EIF4G2P78344 907 aaKnown RBP eCLIP14.37□□□□□ -0.11
USP39-215ENST00000481409 C14orf93Q9H972 538 aaKnown RBP14.37□□□□□ -0.11
USP39-215ENST00000481409 EID1Q9Y6B2 187 aa14.37□□□□□ -0.11
USP39-215ENST00000481409 ADGRF5Q8IZF2 1346 aa14.37□□□□□ -0.11
USP39-215ENST00000481409 SLC24A1O60721 1099 aa14.36□□□□□ -0.11
USP39-215ENST00000481409 KDM4FA0A1W2PPD8 638 aa14.35□□□□□ -0.11
USP39-215ENST00000481409 CARD11Q9BXL7 1154 aa14.35□□□□□ -0.11
USP39-215ENST00000481409 ZNF316A6NFI3 1004 aaPredicted RBP14.34□□□□□ -0.11
USP39-215ENST00000481409 PLEKHG1Q9ULL1 1385 aa14.34□□□□□ -0.11
USP39-215ENST00000481409 EIF3AQ14152 1382 aaKnown RBP14.32□□□□□ -0.12
USP39-215ENST00000481409 SCAF11Q99590 1463 aaKnown RBP14.31□□□□□ -0.12
USP39-215ENST00000481409 DIP2AQ14689 1571 aa14.31□□□□□ -0.12
USP39-215ENST00000481409 USP47Q96K76 1375 aa14.31□□□□□ -0.12
USP39-215ENST00000481409 ALKQ9UM73 1620 aa14.3□□□□□ -0.12
USP39-215ENST00000481409 CFAP70Q5T0N1 1121 aa14.3□□□□□ -0.12
USP39-215ENST00000481409 TXNDC2Q86VQ3 553 aa14.3□□□□□ -0.12
USP39-215ENST00000481409 ANKLE2Q86XL3 938 aa14.3□□□□□ -0.12
USP39-215ENST00000481409 ADGRB1O14514 1584 aa14.3□□□□□ -0.12
USP39-215ENST00000481409 IQGAP1P46940 1657 aa14.3□□□□□ -0.12
USP39-215ENST00000481409 NBPF1Q3BBV0 1214 aa14.28□□□□□ -0.12
USP39-215ENST00000481409 NRXN3Q9Y4C0 1643 aa14.27□□□□□ -0.12
USP39-215ENST00000481409 MED14O60244 1454 aa14.27□□□□□ -0.12
USP39-215ENST00000481409 HSPA5P11021 654 aaKnown RBP14.27□□□□□ -0.13
USP39-215ENST00000481409 SETD1AO15047 1707 aaKnown RBP14.27□□□□□ -0.13
USP39-215ENST00000481409 PIK3R4Q99570 1358 aa14.26□□□□□ -0.13
USP39-215ENST00000481409 LTKP29376 864 aa14.26□□□□□ -0.13
USP39-215ENST00000481409 TBX22Q9Y458 520 aa14.26□□□□□ -0.13
USP39-215ENST00000481409 SBNO2Q9Y2G9 1366 aa14.25□□□□□ -0.13
USP39-215ENST00000481409 POLR1AO95602 1720 aaPredicted RBP14.25□□□□□ -0.13
USP39-215ENST00000481409 NUTM2DQ5VT03 806 aaPredicted RBP14.25□□□□□ -0.13
USP39-215ENST00000481409 SIRT1Q96EB6 747 aa14.25□□□□□ -0.13
USP39-215ENST00000481409 DLC1Q96QB1 1528 aa14.25□□□□□ -0.13
USP39-215ENST00000481409 ADAMTS13Q76LX8 1427 aa14.24□□□□□ -0.13
USP39-215ENST00000481409 LRPPRCP42704 1394 aaKnown RBP14.23□□□□□ -0.13
USP39-215ENST00000481409 ABCC11Q96J66 1382 aa14.23□□□□□ -0.13
USP39-215ENST00000481409 YTHDC2Q9H6S0 1430 aaKnown RBP14.23□□□□□ -0.13
USP39-215ENST00000481409 KNDC1Q76NI1 1749 aa14.22□□□□□ -0.13
USP39-215ENST00000481409 TECPR2O15040 1411 aa14.22□□□□□ -0.13
USP39-215ENST00000481409 ASXL1Q8IXJ9 1541 aa14.21□□□□□ -0.13
USP39-215ENST00000481409 LMTK3Q96Q04 1460 aa14.21□□□□□ -0.13
USP39-215ENST00000481409 ST20-MTHFSA0A0A6YYL1 179 aa14.21□□□□□ -0.13
USP39-215ENST00000481409 CDCA8Q53HL2 280 aa14.21□□□□□ -0.13
USP39-215ENST00000481409 BCANQ96GW7 911 aa14.21□□□□□ -0.13
USP39-215ENST00000481409 NPHP4O75161 1426 aaPredicted RBP14.2□□□□□ -0.14
USP39-215ENST00000481409 FAM135BQ49AJ0 1406 aa14.2□□□□□ -0.14
USP39-215ENST00000481409 ARHGEF28Q8N1W1 1705 aaKnown RBP14.2□□□□□ -0.14
USP39-215ENST00000481409 CENPJQ9HC77 1338 aaPredicted RBP14.18□□□□□ -0.14
USP39-215ENST00000481409 TMF1P82094 1093 aa14.18□□□□□ -0.14
USP39-215ENST00000481409 TMEM132EQ6IEE7 984 aa14.18□□□□□ -0.14
USP39-215ENST00000481409 PUS7Q96PZ0 661 aaKnown RBP14.18□□□□□ -0.14
USP39-215ENST00000481409 CPS1P31327 1500 aa14.18□□□□□ -0.14
USP39-215ENST00000481409 METP08581 1390 aa14.18□□□□□ -0.14
USP39-215ENST00000481409 TESK2Q96S53 571 aa14.17□□□□□ -0.14
USP39-215ENST00000481409 PTCH1Q13635 1447 aa14.16□□□□□ -0.14
USP39-215ENST00000481409 TRAK1Q9UPV9 953 aa14.16□□□□□ -0.14
USP39-215ENST00000481409 QRICH2Q9H0J4 1663 aa14.14□□□□□ -0.15
USP39-215ENST00000481409 CCDC7Q96M83 1385 aa14.14□□□□□ -0.15
USP39-215ENST00000481409 CHD2O14647 1828 aaKnown RBP14.13□□□□□ -0.15
USP39-215ENST00000481409 XRN1Q8IZH2 1706 aaKnown RBP14.13□□□□□ -0.15
USP39-215ENST00000481409 SLC26A8Q96RN1 970 aa14.13□□□□□ -0.15
USP39-215ENST00000481409 DMRT2Q9Y5R5 561 aa14.13□□□□□ -0.15
USP39-215ENST00000481409 HIRIP3Q9BW71 556 aaPredicted RBP14.12□□□□□ -0.15
USP39-215ENST00000481409 POGKQ9P215 609 aa14.12□□□□□ -0.15
USP39-215ENST00000481409 WASHC2AQ641Q2 1341 aa14.12□□□□□ -0.15
USP39-215ENST00000481409 NCKAP5LQ9HCH0 1330 aa14.12□□□□□ -0.15
USP39-215ENST00000481409 NWD1Q149M9 1564 aa14.11□□□□□ -0.15
USP39-215ENST00000481409 STK26Q9P289 416 aa14.11□□□□□ -0.15
USP39-215ENST00000481409 AMOTL2Q9Y2J4 779 aa14.11□□□□□ -0.15
USP39-215ENST00000481409 KIF7Q2M1P5 1343 aa14.11□□□□□ -0.15
USP39-215ENST00000481409 EVC2Q86UK5 1308 aa14.11□□□□□ -0.15
USP39-215ENST00000481409 PTPRUQ92729 1446 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms