RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 TMEM131LA2VDJ0 1609 aa23.3■■□□□ 1.32
LIMS3-203ENST00000480744 CHGAP10645 457 aaKnown RBP23.3■■□□□ 1.32
LIMS3-203ENST00000480744 MED1Q15648 1581 aaPredicted RBP23.29■■□□□ 1.32
LIMS3-203ENST00000480744 NUP155O75694 1391 aa23.28■■□□□ 1.32
LIMS3-203ENST00000480744 PPP1R15AO75807 674 aaPredicted RBP23.28■■□□□ 1.32
LIMS3-203ENST00000480744 RIMS2Q9UQ26 1411 aa23.27■■□□□ 1.32
LIMS3-203ENST00000480744 KCNA6P17658 529 aa23.26■■□□□ 1.31
LIMS3-203ENST00000480744 ZFYVE9O95405 1425 aa23.25■■□□□ 1.31
LIMS3-203ENST00000480744 SOCS7O14512 581 aa23.25■■□□□ 1.31
LIMS3-203ENST00000480744 TMEM94Q12767 1356 aa23.25■■□□□ 1.31
LIMS3-203ENST00000480744 PROSER2Q86WR7 435 aaPredicted RBP23.24■■□□□ 1.31
LIMS3-203ENST00000480744 NWD1Q149M9 1564 aa23.23■■□□□ 1.31
LIMS3-203ENST00000480744 HDGFP51858 240 aaKnown RBP23.23■■□□□ 1.31
LIMS3-203ENST00000480744 PLEKHG1Q9ULL1 1385 aa23.23■■□□□ 1.31
LIMS3-203ENST00000480744 RBM33Q96EV2 1170 aaKnown RBP23.22■■□□□ 1.31
LIMS3-203ENST00000480744 CHD2O14647 1828 aaKnown RBP23.22■■□□□ 1.31
LIMS3-203ENST00000480744 NKTRP30414 1462 aaKnown RBP23.21■■□□□ 1.31
LIMS3-203ENST00000480744 SPHKAPQ2M3C7 1700 aa23.2■■□□□ 1.3
LIMS3-203ENST00000480744 NUTM2DQ5VT03 806 aaPredicted RBP23.2■■□□□ 1.3
LIMS3-203ENST00000480744 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.18■■□□□ 1.3
LIMS3-203ENST00000480744 RRBP1Q9P2E9 1410 aaKnown RBP23.16■■□□□ 1.3
LIMS3-203ENST00000480744 PHF23Q9BUL5 403 aaPredicted RBP23.15■■□□□ 1.3
LIMS3-203ENST00000480744 ROBO1Q9Y6N7 1651 aa23.14■■□□□ 1.29
LIMS3-203ENST00000480744 MSH6P52701 1360 aa23.13■■□□□ 1.29
LIMS3-203ENST00000480744 TBX22Q9Y458 520 aa23.12■■□□□ 1.29
LIMS3-203ENST00000480744 DIP2AQ14689 1571 aa23.11■■□□□ 1.29
LIMS3-203ENST00000480744 FAM135BQ49AJ0 1406 aa23.11■■□□□ 1.29
LIMS3-203ENST00000480744 ADAMTS13Q76LX8 1427 aa23.1■■□□□ 1.29
LIMS3-203ENST00000480744 NAIPQ13075 1403 aa23.08■■□□□ 1.29
LIMS3-203ENST00000480744 ZNF326Q5BKZ1 582 aaKnown RBP23.07■■□□□ 1.28
LIMS3-203ENST00000480744 C14orf37Q86TY3 774 aa23.07■■□□□ 1.28
LIMS3-203ENST00000480744 TRPM2O94759 1503 aa23.07■■□□□ 1.28
LIMS3-203ENST00000480744 CLTCL1P53675 1640 aa23.06■■□□□ 1.28
LIMS3-203ENST00000480744 KIF1BO60333 1816 aa23.05■■□□□ 1.28
LIMS3-203ENST00000480744 PHLPP1O60346 1717 aa23.03■■□□□ 1.28
LIMS3-203ENST00000480744 TRIM52Q96A61 297 aa23.03■■□□□ 1.28
LIMS3-203ENST00000480744 SLAIN2Q9P270 581 aa23.03■■□□□ 1.28
LIMS3-203ENST00000480744 PIK3R4Q99570 1358 aa23.02■■□□□ 1.28
LIMS3-203ENST00000480744 NRXN3Q9Y4C0 1643 aa23.02■■□□□ 1.28
LIMS3-203ENST00000480744 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.02■■□□□ 1.28
LIMS3-203ENST00000480744 HFM1A2PYH4 1435 aa22.99■■□□□ 1.27
LIMS3-203ENST00000480744 SETBP1Q9Y6X0 1596 aa22.99■■□□□ 1.27
LIMS3-203ENST00000480744 AMOTL2Q9Y2J4 779 aa22.99■■□□□ 1.27
LIMS3-203ENST00000480744 PTPRUQ92729 1446 aa22.99■■□□□ 1.27
LIMS3-203ENST00000480744 NCOA3Q9Y6Q9 1424 aa22.99■■□□□ 1.27
LIMS3-203ENST00000480744 NEXMIFQ5QGS0 1516 aa22.97■■□□□ 1.27
LIMS3-203ENST00000480744 XRN1Q8IZH2 1706 aaKnown RBP22.96■■□□□ 1.27
LIMS3-203ENST00000480744 ATF3P18847 181 aa22.94■■□□□ 1.26
LIMS3-203ENST00000480744 C19orf44Q9H6X5 657 aa22.94■■□□□ 1.26
LIMS3-203ENST00000480744 CADPS2Q86UW7 1296 aa22.93■■□□□ 1.26
LIMS3-203ENST00000480744 SLC4A1APQ9BWU0 796 aaKnown RBP22.93■■□□□ 1.26
LIMS3-203ENST00000480744 COL16A1Q07092 1604 aaPredicted RBP22.91■■□□□ 1.26
LIMS3-203ENST00000480744 METP08581 1390 aa22.9■■□□□ 1.26
LIMS3-203ENST00000480744 RGS17Q9UGC6 210 aaPredicted RBP22.89■■□□□ 1.25
LIMS3-203ENST00000480744 JCADQ9P266 1359 aa22.88■■□□□ 1.25
LIMS3-203ENST00000480744 PPLO60437 1756 aa22.86■■□□□ 1.25
LIMS3-203ENST00000480744 AHDC1Q5TGY3 1603 aaPredicted RBP22.85■■□□□ 1.25
LIMS3-203ENST00000480744 FOXD1Q16676 465 aa22.84■■□□□ 1.25
LIMS3-203ENST00000480744 SETD1AO15047 1707 aaKnown RBP22.84■■□□□ 1.25
LIMS3-203ENST00000480744 NALCNQ8IZF0 1738 aa22.84■■□□□ 1.25
LIMS3-203ENST00000480744 DCCP43146 1447 aa22.83■■□□□ 1.25
LIMS3-203ENST00000480744 VGFO15240 615 aaPredicted RBP22.82■■□□□ 1.24
LIMS3-203ENST00000480744 BRINP3Q76B58 766 aa22.81■■□□□ 1.24
LIMS3-203ENST00000480744 ADGRL3Q9HAR2 1447 aa22.8■■□□□ 1.24
LIMS3-203ENST00000480744 SHPRHQ149N8 1683 aa22.8■■□□□ 1.24
LIMS3-203ENST00000480744 RPGRIP1LQ68CZ1 1315 aa22.8■■□□□ 1.24
LIMS3-203ENST00000480744 ASXL1Q8IXJ9 1541 aa22.79■■□□□ 1.24
LIMS3-203ENST00000480744 POTEAQ6S8J7 498 aa22.79■■□□□ 1.24
LIMS3-203ENST00000480744 MST1RQ04912 1400 aa22.79■■□□□ 1.24
LIMS3-203ENST00000480744 CCDC144AA2RUR9 1427 aa22.76■■□□□ 1.23
LIMS3-203ENST00000480744 NHSL1Q5SYE7 1610 aa22.76■■□□□ 1.23
LIMS3-203ENST00000480744 MEX3CQ5U5Q3 659 aaKnown RBP22.76■■□□□ 1.23
LIMS3-203ENST00000480744 LRP6O75581 1613 aa22.75■■□□□ 1.23
LIMS3-203ENST00000480744 SPATA31A6Q5VVP1 1343 aa22.75■■□□□ 1.23
LIMS3-203ENST00000480744 MPHOSPH9Q99550 1183 aa22.74■■□□□ 1.23
LIMS3-203ENST00000480744 PTCH1Q13635 1447 aa22.74■■□□□ 1.23
LIMS3-203ENST00000480744 IFT172Q9UG01 1749 aa22.72■■□□□ 1.23
LIMS3-203ENST00000480744 RGL3Q3MIN7 710 aa22.72■■□□□ 1.23
LIMS3-203ENST00000480744 ROBO2Q9HCK4 1378 aa22.72■■□□□ 1.23
LIMS3-203ENST00000480744 NUTM2BA6NNL0 878 aaPredicted RBP22.69■■□□□ 1.22
LIMS3-203ENST00000480744 NUTM2EB1AL46 878 aaPredicted RBP22.69■■□□□ 1.22
LIMS3-203ENST00000480744 NUTM2AQ8IVF1 878 aaPredicted RBP22.69■■□□□ 1.22
LIMS3-203ENST00000480744 DDX17Q92841 729 aaKnown RBP22.68■■□□□ 1.22
LIMS3-203ENST00000480744 SPATA31E1Q6ZUB1 1445 aa22.67■■□□□ 1.22
LIMS3-203ENST00000480744 ADGRF5Q8IZF2 1346 aa22.67■■□□□ 1.22
LIMS3-203ENST00000480744 C1orf167Q5SNV9 1468 aa22.66■■□□□ 1.22
LIMS3-203ENST00000480744 SETD5Q9C0A6 1442 aa22.66■■□□□ 1.22
LIMS3-203ENST00000480744 PRAG1Q86YV5 1406 aa22.65■■□□□ 1.22
LIMS3-203ENST00000480744 LRRC59Q96AG4 307 aaKnown RBP22.64■■□□□ 1.21
LIMS3-203ENST00000480744 ANKRD30BQ9BXX2 1392 aa22.63■■□□□ 1.21
LIMS3-203ENST00000480744 ZNF772Q68DY9 489 aaPredicted RBP22.62■■□□□ 1.21
LIMS3-203ENST00000480744 STK26Q9P289 416 aa22.62■■□□□ 1.21
LIMS3-203ENST00000480744 ORAI2Q96SN7 254 aa22.61■■□□□ 1.21
LIMS3-203ENST00000480744 ACIN1Q9UKV3 1341 aaKnown RBP22.6■■□□□ 1.21
LIMS3-203ENST00000480744 LAMC1P11047 1609 aa22.6■■□□□ 1.21
LIMS3-203ENST00000480744 KNDC1Q76NI1 1749 aa22.6■■□□□ 1.21
LIMS3-203ENST00000480744 PNPLA6Q8IY17 1366 aa22.59■■□□□ 1.21
LIMS3-203ENST00000480744 CDC42BPGQ6DT37 1551 aa22.59■■□□□ 1.21
LIMS3-203ENST00000480744 RAB3GAP2Q9H2M9 1393 aa22.58■■□□□ 1.21
LIMS3-203ENST00000480744 PIK3C2GO75747 1445 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms