RNA–Protein interactions for RNA: ENST00000479542.1

ABCF1-206, Transcript of ATP binding cassette subfamily F member 1, humanhuman

TSL 2

Gene ABCF1, Length 893 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF1-206ENST00000479542 PLEKHG1Q9ULL1 1385 aa20.59■□□□□ 0.89
ABCF1-206ENST00000479542 NCOA3Q9Y6Q9 1424 aa20.59■□□□□ 0.89
ABCF1-206ENST00000479542 FAM50AQ14320 339 aaKnown RBP20.58■□□□□ 0.89
ABCF1-206ENST00000479542 TBX22Q9Y458 520 aa20.58■□□□□ 0.89
ABCF1-206ENST00000479542 ROCK1Q13464 1354 aa20.58■□□□□ 0.88
ABCF1-206ENST00000479542 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.57■□□□□ 0.88
ABCF1-206ENST00000479542 RGS17Q9UGC6 210 aaPredicted RBP20.55■□□□□ 0.88
ABCF1-206ENST00000479542 MSH6P52701 1360 aa20.54■□□□□ 0.88
ABCF1-206ENST00000479542 TMEM131LA2VDJ0 1609 aa20.53■□□□□ 0.88
ABCF1-206ENST00000479542 UNC13BO14795 1591 aa20.53■□□□□ 0.88
ABCF1-206ENST00000479542 RIMS2Q9UQ26 1411 aa20.53■□□□□ 0.88
ABCF1-206ENST00000479542 GCC2Q8IWJ2 1684 aa20.52■□□□□ 0.88
ABCF1-206ENST00000479542 PIK3R4Q99570 1358 aa20.52■□□□□ 0.88
ABCF1-206ENST00000479542 SLAIN2Q9P270 581 aa20.52■□□□□ 0.88
ABCF1-206ENST00000479542 CHD2O14647 1828 aaKnown RBP20.52■□□□□ 0.88
ABCF1-206ENST00000479542 ROBO1Q9Y6N7 1651 aa20.49■□□□□ 0.87
ABCF1-206ENST00000479542 BCANQ96GW7 911 aa20.49■□□□□ 0.87
ABCF1-206ENST00000479542 PPP1R15AO75807 674 aaPredicted RBP20.48■□□□□ 0.87
ABCF1-206ENST00000479542 SENP3Q9H4L4 574 aaPredicted RBP20.47■□□□□ 0.87
ABCF1-206ENST00000479542 DIP2AQ14689 1571 aa20.46■□□□□ 0.87
ABCF1-206ENST00000479542 IQGAP3Q86VI3 1631 aa20.45■□□□□ 0.87
ABCF1-206ENST00000479542 ADAMTS13Q76LX8 1427 aa20.45■□□□□ 0.86
ABCF1-206ENST00000479542 MYO5BQ9ULV0 1848 aa20.45■□□□□ 0.86
ABCF1-206ENST00000479542 RBM33Q96EV2 1170 aaKnown RBP20.44■□□□□ 0.86
ABCF1-206ENST00000479542 C19orf44Q9H6X5 657 aa20.44■□□□□ 0.86
ABCF1-206ENST00000479542 E9PCH4 1651 aa20.44■□□□□ 0.86
ABCF1-206ENST00000479542 JCADQ9P266 1359 aa20.44■□□□□ 0.86
ABCF1-206ENST00000479542 CADPS2Q86UW7 1296 aa20.42■□□□□ 0.86
ABCF1-206ENST00000479542 NUP155O75694 1391 aa20.41■□□□□ 0.86
ABCF1-206ENST00000479542 POTEAQ6S8J7 498 aa20.39■□□□□ 0.85
ABCF1-206ENST00000479542 CHGAP10645 457 aaKnown RBP20.38■□□□□ 0.85
ABCF1-206ENST00000479542 SPATA31A6Q5VVP1 1343 aa20.37■□□□□ 0.85
ABCF1-206ENST00000479542 PHLPP1O60346 1717 aa20.37■□□□□ 0.85
ABCF1-206ENST00000479542 TRPM2O94759 1503 aa20.36■□□□□ 0.85
ABCF1-206ENST00000479542 DCCP43146 1447 aa20.36■□□□□ 0.85
ABCF1-206ENST00000479542 ATF3P18847 181 aa20.35■□□□□ 0.85
ABCF1-206ENST00000479542 AMOTL2Q9Y2J4 779 aa20.34■□□□□ 0.85
ABCF1-206ENST00000479542 COL16A1Q07092 1604 aaPredicted RBP20.34■□□□□ 0.85
ABCF1-206ENST00000479542 AHDC1Q5TGY3 1603 aaPredicted RBP20.33■□□□□ 0.84
ABCF1-206ENST00000479542 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.33■□□□□ 0.84
ABCF1-206ENST00000479542 SETBP1Q9Y6X0 1596 aa20.32■□□□□ 0.84
ABCF1-206ENST00000479542 PTPRUQ92729 1446 aa20.31■□□□□ 0.84
ABCF1-206ENST00000479542 C14orf37Q86TY3 774 aa20.31■□□□□ 0.84
ABCF1-206ENST00000479542 NUTM2DQ5VT03 806 aaPredicted RBP20.3■□□□□ 0.84
ABCF1-206ENST00000479542 ZNF772Q68DY9 489 aaPredicted RBP20.27■□□□□ 0.84
ABCF1-206ENST00000479542 BRINP3Q76B58 766 aa20.27■□□□□ 0.84
ABCF1-206ENST00000479542 SPHKAPQ2M3C7 1700 aa20.26■□□□□ 0.83
ABCF1-206ENST00000479542 SHPRHQ149N8 1683 aa20.26■□□□□ 0.83
ABCF1-206ENST00000479542 XRN1Q8IZH2 1706 aaKnown RBP20.25■□□□□ 0.83
ABCF1-206ENST00000479542 NRXN3Q9Y4C0 1643 aa20.25■□□□□ 0.83
ABCF1-206ENST00000479542 SETD5Q9C0A6 1442 aa20.24■□□□□ 0.83
ABCF1-206ENST00000479542 ITGAEP38570 1179 aa20.23■□□□□ 0.83
ABCF1-206ENST00000479542 RRBP1Q9P2E9 1410 aaKnown RBP20.23■□□□□ 0.83
ABCF1-206ENST00000479542 LRP6O75581 1613 aa20.22■□□□□ 0.83
ABCF1-206ENST00000479542 METP08581 1390 aa20.21■□□□□ 0.83
ABCF1-206ENST00000479542 ZNF326Q5BKZ1 582 aaKnown RBP20.21■□□□□ 0.83
ABCF1-206ENST00000479542 MST1RQ04912 1400 aa20.2■□□□□ 0.82
ABCF1-206ENST00000479542 LRRC59Q96AG4 307 aaKnown RBP20.2■□□□□ 0.82
ABCF1-206ENST00000479542 NAIPQ13075 1403 aa20.19■□□□□ 0.82
ABCF1-206ENST00000479542 ADGRL3Q9HAR2 1447 aa20.19■□□□□ 0.82
ABCF1-206ENST00000479542 NEXMIFQ5QGS0 1516 aa20.18■□□□□ 0.82
ABCF1-206ENST00000479542 ASXL1Q8IXJ9 1541 aa20.18■□□□□ 0.82
ABCF1-206ENST00000479542 VGFO15240 615 aaPredicted RBP20.18■□□□□ 0.82
ABCF1-206ENST00000479542 MEX3CQ5U5Q3 659 aaKnown RBP20.18■□□□□ 0.82
ABCF1-206ENST00000479542 RPGRIP1LQ68CZ1 1315 aa20.18■□□□□ 0.82
ABCF1-206ENST00000479542 PRAG1Q86YV5 1406 aa20.18■□□□□ 0.82
ABCF1-206ENST00000479542 CDK12Q9NYV4 1490 aaPredicted RBP20.16■□□□□ 0.82
ABCF1-206ENST00000479542 CLTCL1P53675 1640 aa20.15■□□□□ 0.82
ABCF1-206ENST00000479542 NHSL1Q5SYE7 1610 aa20.15■□□□□ 0.82
ABCF1-206ENST00000479542 PTCH1Q13635 1447 aa20.13■□□□□ 0.81
ABCF1-206ENST00000479542 RXRBP28702 533 aa20.13■□□□□ 0.81
ABCF1-206ENST00000479542 KIF1BO60333 1816 aa20.13■□□□□ 0.81
ABCF1-206ENST00000479542 HFM1A2PYH4 1435 aa20.11■□□□□ 0.81
ABCF1-206ENST00000479542 LAMC1P11047 1609 aa20.1■□□□□ 0.81
ABCF1-206ENST00000479542 UPF1Q92900 1129 aaKnown RBP eCLIP20.1■□□□□ 0.814e-7■■■■□ 26.3
ABCF1-206ENST00000479542 C1orf167Q5SNV9 1468 aa20.08■□□□□ 0.81
ABCF1-206ENST00000479542 PPARGC1BQ86YN6 1023 aaKnown RBP20.08■□□□□ 0.81
ABCF1-206ENST00000479542 PNPLA6Q8IY17 1366 aa20.08■□□□□ 0.8
ABCF1-206ENST00000479542 AFF2P51816 1311 aa20.06■□□□□ 0.8
ABCF1-206ENST00000479542 SOS2Q07890 1332 aaPredicted RBP20.06■□□□□ 0.8
ABCF1-206ENST00000479542 NUTM2BA6NNL0 878 aaPredicted RBP20.06■□□□□ 0.8
ABCF1-206ENST00000479542 NUTM2EB1AL46 878 aaPredicted RBP20.06■□□□□ 0.8
ABCF1-206ENST00000479542 SETD1AO15047 1707 aaKnown RBP20.06■□□□□ 0.8
ABCF1-206ENST00000479542 NUTM2AQ8IVF1 878 aaPredicted RBP20.06■□□□□ 0.8
ABCF1-206ENST00000479542 NALCNQ8IZF0 1738 aa20.06■□□□□ 0.8
ABCF1-206ENST00000479542 SLC4A1APQ9BWU0 796 aaKnown RBP20.05■□□□□ 0.8
ABCF1-206ENST00000479542 ROBO2Q9HCK4 1378 aa20.05■□□□□ 0.8
ABCF1-206ENST00000479542 RBM6P78332 1123 aaKnown RBP20.03■□□□□ 0.8
ABCF1-206ENST00000479542 TRIM52Q96A61 297 aa20.03■□□□□ 0.8
ABCF1-206ENST00000479542 QTRT2Q9H974 415 aaKnown RBP20.01■□□□□ 0.79
ABCF1-206ENST00000479542 ACIN1Q9UKV3 1341 aaKnown RBP20.01■□□□□ 0.79
ABCF1-206ENST00000479542 DDX17Q92841 729 aaKnown RBP19.99■□□□□ 0.79
ABCF1-206ENST00000479542 ORAI2Q96SN7 254 aa19.99■□□□□ 0.79
ABCF1-206ENST00000479542 PPLO60437 1756 aa19.98■□□□□ 0.79
ABCF1-206ENST00000479542 NGLY1Q96IV0 654 aa19.98■□□□□ 0.79
ABCF1-206ENST00000479542 C8orf37Q96NL8 207 aa19.98■□□□□ 0.79
ABCF1-206ENST00000479542 FNBP4Q8N3X1 1017 aaPredicted RBP19.97■□□□□ 0.79
ABCF1-206ENST00000479542 ANKRD30BQ9BXX2 1392 aa19.96■□□□□ 0.79
ABCF1-206ENST00000479542 TECPR2O15040 1411 aa19.96■□□□□ 0.79
ABCF1-206ENST00000479542 NPHP3Q7Z494 1330 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms