RNA–Protein interactions for RNA: ENST00000479168.5

LIMS3-202, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 2

Gene LIMS3, Length 626 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-202ENST00000479168 IQGAP1P46940 1657 aa21.5■■□□□ 1.03
LIMS3-202ENST00000479168 LTKP29376 864 aa21.49■■□□□ 1.03
LIMS3-202ENST00000479168 ZNF326Q5BKZ1 582 aaKnown RBP21.49■■□□□ 1.03
LIMS3-202ENST00000479168 PLEKHG1Q9ULL1 1385 aa21.48■■□□□ 1.03
LIMS3-202ENST00000479168 RPGRIP1LQ68CZ1 1315 aa21.47■■□□□ 1.03
LIMS3-202ENST00000479168 ANKRD30BQ9BXX2 1392 aa21.44■■□□□ 1.02
LIMS3-202ENST00000479168 BCANQ96GW7 911 aa21.43■■□□□ 1.02
LIMS3-202ENST00000479168 KIF1BO60333 1816 aa21.43■■□□□ 1.02
LIMS3-202ENST00000479168 VGFO15240 615 aaPredicted RBP21.41■■□□□ 1.02
LIMS3-202ENST00000479168 DIP2AQ14689 1571 aa21.4■■□□□ 1.02
LIMS3-202ENST00000479168 CPS1P31327 1500 aa21.4■■□□□ 1.02
LIMS3-202ENST00000479168 SPATA31E1Q6ZUB1 1445 aa21.4■■□□□ 1.02
LIMS3-202ENST00000479168 ZNF335Q9H4Z2 1342 aaPredicted RBP21.39■■□□□ 1.01
LIMS3-202ENST00000479168 NEXMIFQ5QGS0 1516 aa21.39■■□□□ 1.01
LIMS3-202ENST00000479168 IQSEC2Q5JU85 1478 aa21.38■■□□□ 1.01
LIMS3-202ENST00000479168 MYO5BQ9ULV0 1848 aa21.37■■□□□ 1.01
LIMS3-202ENST00000479168 TBX22Q9Y458 520 aa21.36■■□□□ 1.01
LIMS3-202ENST00000479168 LTBP4Q8N2S1 1624 aa21.36■■□□□ 1.01
LIMS3-202ENST00000479168 SETBP1Q9Y6X0 1596 aa21.36■■□□□ 1.01
LIMS3-202ENST00000479168 PIK3R4Q99570 1358 aa21.36■■□□□ 1.01
LIMS3-202ENST00000479168 CERKQ8TCT0 537 aa21.35■■□□□ 1.01
LIMS3-202ENST00000479168 STAC3Q96MF2 364 aa21.33■■□□□ 1.01
LIMS3-202ENST00000479168 SLC26A8Q96RN1 970 aa21.33■■□□□ 1.01
LIMS3-202ENST00000479168 RGL3Q3MIN7 710 aa21.32■■□□□ 1
LIMS3-202ENST00000479168 NUTM2DQ5VT03 806 aaPredicted RBP21.32■■□□□ 1
LIMS3-202ENST00000479168 ADAMTS13Q76LX8 1427 aa21.31■■□□□ 1
LIMS3-202ENST00000479168 NKTRP30414 1462 aaKnown RBP21.31■■□□□ 1
LIMS3-202ENST00000479168 KCNA6P17658 529 aa21.3■■□□□ 1
LIMS3-202ENST00000479168 DHX57Q6P158 1386 aaKnown RBP21.3■■□□□ 1
LIMS3-202ENST00000479168 MYOM2P54296 1465 aa21.29■■□□□ 1
LIMS3-202ENST00000479168 NWD1Q149M9 1564 aa21.27■■□□□ 1
LIMS3-202ENST00000479168 PCGF6Q9BYE7 350 aa21.26■□□□□ 0.99
LIMS3-202ENST00000479168 PPLO60437 1756 aa21.25■□□□□ 0.99
LIMS3-202ENST00000479168 PIK3C2GO75747 1445 aa21.23■□□□□ 0.99
LIMS3-202ENST00000479168 NRXN3Q9Y4C0 1643 aa21.22■□□□□ 0.99
LIMS3-202ENST00000479168 NRXN1Q9ULB1 1477 aa21.21■□□□□ 0.99
LIMS3-202ENST00000479168 LRRC7Q96NW7 1537 aa21.21■□□□□ 0.99
LIMS3-202ENST00000479168 FBXO41Q8TF61 875 aa21.21■□□□□ 0.99
LIMS3-202ENST00000479168 SENP3Q9H4L4 574 aaPredicted RBP21.21■□□□□ 0.99
LIMS3-202ENST00000479168 ADGRF5Q8IZF2 1346 aa21.21■□□□□ 0.99
LIMS3-202ENST00000479168 IFT172Q9UG01 1749 aa21.21■□□□□ 0.99
LIMS3-202ENST00000479168 NCOA3Q9Y6Q9 1424 aa21.2■□□□□ 0.98
LIMS3-202ENST00000479168 ALKQ9UM73 1620 aa21.18■□□□□ 0.98
LIMS3-202ENST00000479168 METP08581 1390 aa21.18■□□□□ 0.98
LIMS3-202ENST00000479168 PROSER2Q86WR7 435 aaPredicted RBP21.17■□□□□ 0.98
LIMS3-202ENST00000479168 DCAF11Q8TEB1 546 aa21.17■□□□□ 0.98
LIMS3-202ENST00000479168 PRAG1Q86YV5 1406 aa21.17■□□□□ 0.98
LIMS3-202ENST00000479168 LAMC1P11047 1609 aa21.17■□□□□ 0.98
LIMS3-202ENST00000479168 TMEM94Q12767 1356 aa21.16■□□□□ 0.98
LIMS3-202ENST00000479168 AMOTL2Q9Y2J4 779 aa21.16■□□□□ 0.98
LIMS3-202ENST00000479168 PTCH1Q13635 1447 aa21.15■□□□□ 0.98
LIMS3-202ENST00000479168 CLSPNQ9HAW4 1339 aa21.15■□□□□ 0.98
LIMS3-202ENST00000479168 TOM1O60784 492 aa21.14■□□□□ 0.97
LIMS3-202ENST00000479168 CHD2O14647 1828 aaKnown RBP21.13■□□□□ 0.97
LIMS3-202ENST00000479168 STRCP1A6NGW2 1772 aa21.13■□□□□ 0.97
LIMS3-202ENST00000479168 PTPRUQ92729 1446 aa21.12■□□□□ 0.97
LIMS3-202ENST00000479168 XRN1Q8IZH2 1706 aaKnown RBP21.12■□□□□ 0.97
LIMS3-202ENST00000479168 MSH6P52701 1360 aa21.12■□□□□ 0.97
LIMS3-202ENST00000479168 C14orf93Q9H972 538 aaKnown RBP21.12■□□□□ 0.97
LIMS3-202ENST00000479168 UBAP1LF5GYI3 381 aa21.11■□□□□ 0.97
LIMS3-202ENST00000479168 C14orf37Q86TY3 774 aa21.1■□□□□ 0.97
LIMS3-202ENST00000479168 KDM2AQ9Y2K7 1162 aa21.1■□□□□ 0.97
LIMS3-202ENST00000479168 LRPPRCP42704 1394 aaKnown RBP21.1■□□□□ 0.97
LIMS3-202ENST00000479168 SETD1AO15047 1707 aaKnown RBP21.09■□□□□ 0.97
LIMS3-202ENST00000479168 NEUROD1Q13562 356 aa21.09■□□□□ 0.97
LIMS3-202ENST00000479168 TECPR2O15040 1411 aa21.09■□□□□ 0.97
LIMS3-202ENST00000479168 TONSLQ96HA7 1378 aa21.08■□□□□ 0.96
LIMS3-202ENST00000479168 DCCP43146 1447 aa21.07■□□□□ 0.96
LIMS3-202ENST00000479168 SIN3AQ96ST3 1273 aa21.07■□□□□ 0.96
LIMS3-202ENST00000479168 ABCC11Q96J66 1382 aa21.07■□□□□ 0.96
LIMS3-202ENST00000479168 YTHDC2Q9H6S0 1430 aaKnown RBP21.05■□□□□ 0.96
LIMS3-202ENST00000479168 CFAP70Q5T0N1 1121 aa21.05■□□□□ 0.96
LIMS3-202ENST00000479168 L3MBTL2Q969R5 705 aa21.05■□□□□ 0.96
LIMS3-202ENST00000479168 C19orf44Q9H6X5 657 aa21.05■□□□□ 0.96
LIMS3-202ENST00000479168 ASXL1Q8IXJ9 1541 aa21.04■□□□□ 0.96
LIMS3-202ENST00000479168 CADPS2Q86UW7 1296 aa21.03■□□□□ 0.96
LIMS3-202ENST00000479168 FAM135BQ49AJ0 1406 aa21.03■□□□□ 0.96
LIMS3-202ENST00000479168 ADGRL3Q9HAR2 1447 aa21.03■□□□□ 0.96
LIMS3-202ENST00000479168 ROBO2Q9HCK4 1378 aa21.02■□□□□ 0.96
LIMS3-202ENST00000479168 ATF3P18847 181 aa21.02■□□□□ 0.96
LIMS3-202ENST00000479168 SIRT1Q96EB6 747 aa21.02■□□□□ 0.96
LIMS3-202ENST00000479168 ILDR1Q86SU0 546 aaPredicted RBP21.01■□□□□ 0.95
LIMS3-202ENST00000479168 TMEM132EQ6IEE7 984 aa21■□□□□ 0.95
LIMS3-202ENST00000479168 STK26Q9P289 416 aa21■□□□□ 0.95
LIMS3-202ENST00000479168 ADGRB1O14514 1584 aa21■□□□□ 0.95
LIMS3-202ENST00000479168 KNDC1Q76NI1 1749 aa21■□□□□ 0.95
LIMS3-202ENST00000479168 DLC1Q96QB1 1528 aa20.99■□□□□ 0.95
LIMS3-202ENST00000479168 CCER1Q8TC90 406 aaPredicted RBP20.99■□□□□ 0.95
LIMS3-202ENST00000479168 KIAA1210Q9ULL0 1709 aa20.98■□□□□ 0.95
LIMS3-202ENST00000479168 RBM33Q96EV2 1170 aaKnown RBP20.98■□□□□ 0.95
LIMS3-202ENST00000479168 TIMELESSQ9UNS1 1208 aa20.98■□□□□ 0.95
LIMS3-202ENST00000479168 SCAF1Q9H7N4 1312 aaKnown RBP20.98■□□□□ 0.95
LIMS3-202ENST00000479168 PIP4K2BP78356 416 aa20.96■□□□□ 0.95
LIMS3-202ENST00000479168 XIRP1Q702N8 1843 aaKnown RBP20.96■□□□□ 0.95
LIMS3-202ENST00000479168 SLAIN2Q9P270 581 aa20.93■□□□□ 0.94
LIMS3-202ENST00000479168 POGKQ9P215 609 aa20.92■□□□□ 0.94
LIMS3-202ENST00000479168 ROCK2O75116 1388 aaKnown RBP20.91■□□□□ 0.94
LIMS3-202ENST00000479168 CDC42BPGQ6DT37 1551 aa20.91■□□□□ 0.94
LIMS3-202ENST00000479168 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.9■□□□□ 0.94
LIMS3-202ENST00000479168 PRAM1Q96QH2 718 aa20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms