RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 ROCK1Q13464 1354 aa26.75■■□□□ 1.87
SDF4-206ENST00000478938 C22orf23Q9BZE7 217 aa26.75■■□□□ 1.87
SDF4-206ENST00000478938 DAPK1P53355 1430 aa26.75■■□□□ 1.87
SDF4-206ENST00000478938 PANK1Q8TE04 598 aa26.75■■□□□ 1.87
SDF4-206ENST00000478938 NAP1L2Q9ULW6 460 aaPredicted RBP26.75■■□□□ 1.87
SDF4-206ENST00000478938 CANXP27824 592 aaKnown RBP26.74■■□□□ 1.87
SDF4-206ENST00000478938 ANP32BQ92688 251 aaKnown RBP26.74■■□□□ 1.87
SDF4-206ENST00000478938 MFAP1P55081 439 aaKnown RBP26.74■■□□□ 1.87
SDF4-206ENST00000478938 KIAA1107Q9UPP5 1409 aa26.74■■□□□ 1.87
SDF4-206ENST00000478938 DYNC1I1O14576 645 aa26.73■■□□□ 1.87
SDF4-206ENST00000478938 CGNL1Q0VF96 1302 aa26.73■■□□□ 1.87
SDF4-206ENST00000478938 HSCBQ8IWL3 235 aa26.73■■□□□ 1.87
SDF4-206ENST00000478938 CHMP4BQ9H444 224 aaKnown RBP26.73■■□□□ 1.87
SDF4-206ENST00000478938 DNMBPQ6XZF7 1577 aa26.73■■□□□ 1.87
SDF4-206ENST00000478938 POLA1P09884 1462 aaPredicted RBP26.72■■□□□ 1.87
SDF4-206ENST00000478938 PKD2Q13563 968 aa26.72■■□□□ 1.87
SDF4-206ENST00000478938 CCDC94Q9BW85 323 aaPredicted RBP26.72■■□□□ 1.87
SDF4-206ENST00000478938 WDR62O43379 1518 aa26.71■■□□□ 1.87
SDF4-206ENST00000478938 DDIT3P35638 169 aa26.71■■□□□ 1.87
SDF4-206ENST00000478938 PPP4R3BQ5MIZ7 849 aa26.71■■□□□ 1.87
SDF4-206ENST00000478938 URB2Q14146 1524 aaKnown RBP26.71■■□□□ 1.87
SDF4-206ENST00000478938 PDZRN3Q9UPQ7 1066 aa26.7■■□□□ 1.87
SDF4-206ENST00000478938 WDR43Q15061 677 aaKnown RBP eCLIP26.7■■□□□ 1.86
SDF4-206ENST00000478938 EIF2AK3Q9NZJ5 1116 aaKnown RBP26.7■■□□□ 1.86
SDF4-206ENST00000478938 ABCC5O15440 1437 aa26.68■■□□□ 1.86
SDF4-206ENST00000478938 SKOR2Q2VWA4 1001 aaPredicted RBP26.68■■□□□ 1.86
SDF4-206ENST00000478938 GBP4Q96PP9 640 aa26.68■■□□□ 1.86
SDF4-206ENST00000478938 TOPBP1Q92547 1522 aa26.68■■□□□ 1.86
SDF4-206ENST00000478938 ZNF500O60304 480 aaPredicted RBP26.68■■□□□ 1.86
SDF4-206ENST00000478938 PANK3Q9H999 370 aa26.67■■□□□ 1.86
SDF4-206ENST00000478938 NKTRP30414 1462 aaKnown RBP26.67■■□□□ 1.86
SDF4-206ENST00000478938 TRMT2AQ8IZ69 625 aaKnown RBP26.66■■□□□ 1.86
SDF4-206ENST00000478938 NOL7Q9UMY1 257 aaKnown RBP26.66■■□□□ 1.86
SDF4-206ENST00000478938 NCOA3Q9Y6Q9 1424 aa26.66■■□□□ 1.86
SDF4-206ENST00000478938 SAMD9Q5K651 1589 aa26.66■■□□□ 1.86
SDF4-206ENST00000478938 CUL7Q14999 1698 aa26.65■■□□□ 1.86
SDF4-206ENST00000478938 ZNF644Q9H582 1327 aaPredicted RBP26.64■■□□□ 1.86
SDF4-206ENST00000478938 GAPVD1Q14C86 1478 aa26.64■■□□□ 1.86
SDF4-206ENST00000478938 CCDC146Q8IYE0 955 aa26.64■■□□□ 1.85
SDF4-206ENST00000478938 PDE3AQ14432 1141 aa26.63■■□□□ 1.85
SDF4-206ENST00000478938 PCDHB15Q9Y5E8 787 aa26.63■■□□□ 1.85
SDF4-206ENST00000478938 ARID3CA6NKF2 412 aa26.62■■□□□ 1.85
SDF4-206ENST00000478938 NCLP19338 710 aaKnown RBP26.62■■□□□ 1.85
SDF4-206ENST00000478938 CAMSAP2Q08AD1 1489 aa26.62■■□□□ 1.85
SDF4-206ENST00000478938 RAB3GAP1Q15042 981 aa26.61■■□□□ 1.85
SDF4-206ENST00000478938 TNNT2P45379 298 aaPredicted RBP26.61■■□□□ 1.85
SDF4-206ENST00000478938 SASS6Q6UVJ0 657 aa26.6■■□□□ 1.85
SDF4-206ENST00000478938 ZMYM3Q14202 1370 aa26.6■■□□□ 1.85
SDF4-206ENST00000478938 JARID2Q92833 1246 aaPredicted RBP26.59■■□□□ 1.85
SDF4-206ENST00000478938 KIAA0586Q9BVV6 1533 aa26.59■■□□□ 1.85
SDF4-206ENST00000478938 HS1BP3Q53T59 392 aa26.59■■□□□ 1.85
SDF4-206ENST00000478938 PMFBP1Q8TBY8 1022 aa26.59■■□□□ 1.85
SDF4-206ENST00000478938 DNMT1P26358 1616 aaKnown RBP26.59■■□□□ 1.85
SDF4-206ENST00000478938 CBX1P83916 185 aa26.58■■□□□ 1.85
SDF4-206ENST00000478938 FOXD4L1Q9NU39 408 aa26.58■■□□□ 1.85
SDF4-206ENST00000478938 TMEM51Q9NW97 253 aa26.58■■□□□ 1.85
SDF4-206ENST00000478938 DMRT2Q9Y5R5 561 aa26.58■■□□□ 1.85
SDF4-206ENST00000478938 EPRSP07814 1512 aaKnown RBP26.57■■□□□ 1.84
SDF4-206ENST00000478938 DISP3Q9P2K9 1392 aa26.57■■□□□ 1.84
SDF4-206ENST00000478938 CSPP1Q1MSJ5 1256 aa26.55■■□□□ 1.84
SDF4-206ENST00000478938 SMC5Q8IY18 1101 aa26.55■■□□□ 1.84
SDF4-206ENST00000478938 ARHGEF12Q9NZN5 1544 aa26.55■■□□□ 1.84
SDF4-206ENST00000478938 ZKSCAN5Q9Y2L8 839 aa26.55■■□□□ 1.84
SDF4-206ENST00000478938 HSP90AB1P08238 724 aaKnown RBP26.54■■□□□ 1.84
SDF4-206ENST00000478938 PPP2R1AP30153 589 aa26.54■■□□□ 1.84
SDF4-206ENST00000478938 TSC1Q92574 1164 aa26.54■■□□□ 1.84
SDF4-206ENST00000478938 GTPBP4Q9BZE4 634 aaKnown RBP26.54■■□□□ 1.84
SDF4-206ENST00000478938 CIZ1Q9ULV3 898 aaPredicted RBP26.54■■□□□ 1.84
SDF4-206ENST00000478938 DDX49Q9Y6V7 483 aaKnown RBP26.54■■□□□ 1.84
SDF4-206ENST00000478938 KIF20AO95235 890 aa26.53■■□□□ 1.84
SDF4-206ENST00000478938 APAF1O14727 1248 aa26.53■■□□□ 1.84
SDF4-206ENST00000478938 PTMSP20962 102 aa26.53■■□□□ 1.84
SDF4-206ENST00000478938 TNNQ9UQP3 1299 aa26.53■■□□□ 1.84
SDF4-206ENST00000478938 CLASP1Q7Z460 1538 aa26.53■■□□□ 1.84
SDF4-206ENST00000478938 ZBTB7CA1YPR0 619 aa26.52■■□□□ 1.84
SDF4-206ENST00000478938 VGLL3A8MV65 326 aa26.52■■□□□ 1.84
SDF4-206ENST00000478938 CDK13Q14004 1512 aaKnown RBP26.52■■□□□ 1.84
SDF4-206ENST00000478938 PDLIM2Q96JY6 352 aa26.52■■□□□ 1.84
SDF4-206ENST00000478938 COL17A1Q9UMD9 1497 aaPredicted RBP26.51■■□□□ 1.83
SDF4-206ENST00000478938 SSFA2P28290 1259 aa26.51■■□□□ 1.83
SDF4-206ENST00000478938 IPO4Q8TEX9 1081 aaKnown RBP26.51■■□□□ 1.83
SDF4-206ENST00000478938 IBTKQ9P2D0 1353 aaPredicted RBP26.5■■□□□ 1.83
SDF4-206ENST00000478938 E9PSI1 815 aa26.5■■□□□ 1.83
SDF4-206ENST00000478938 KLHL40Q2TBA0 621 aa26.5■■□□□ 1.83
SDF4-206ENST00000478938 RBSNQ9H1K0 784 aa26.5■■□□□ 1.83
SDF4-206ENST00000478938 TDRD9Q8NDG6 1382 aaKnown RBP26.5■■□□□ 1.83
SDF4-206ENST00000478938 RLBP1P12271 317 aa26.49■■□□□ 1.83
SDF4-206ENST00000478938 NINLQ9Y2I6 1382 aa26.49■■□□□ 1.83
SDF4-206ENST00000478938 LETM1O95202 739 aaPredicted RBP26.48■■□□□ 1.83
SDF4-206ENST00000478938 ZNF710Q8N1W2 664 aa26.48■■□□□ 1.83
SDF4-206ENST00000478938 CCDC144AA2RUR9 1427 aa26.48■■□□□ 1.83
SDF4-206ENST00000478938 NBPF1Q3BBV0 1214 aa26.48■■□□□ 1.83
SDF4-206ENST00000478938 SCAPERQ9BY12 1400 aa26.48■■□□□ 1.83
SDF4-206ENST00000478938 ATP2B3Q16720 1220 aa26.47■■□□□ 1.83
SDF4-206ENST00000478938 SNX21Q969T3 373 aa26.47■■□□□ 1.83
SDF4-206ENST00000478938 GOLGA6L22H0YM25 854 aa26.45■■□□□ 1.82
SDF4-206ENST00000478938 ZNF445P59923 1031 aa26.45■■□□□ 1.82
SDF4-206ENST00000478938 RWDD1Q9H446 243 aaPredicted RBP26.45■■□□□ 1.82
SDF4-206ENST00000478938 CAVIN1Q6NZI2 390 aaKnown RBP26.44■■□□□ 1.82
SDF4-206ENST00000478938 TESK2Q96S53 571 aa26.44■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms