RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 MINK1Q8N4C8 1332 aaPredicted RBP10.81□□□□□ -0.68
SYNE1-224ENST00000478916 MYBBP1AQ9BQG0 1328 aaKnown RBP10.81□□□□□ -0.68
SYNE1-224ENST00000478916 PRDM2Q13029 1718 aa10.81□□□□□ -0.68
SYNE1-224ENST00000478916 ARGLU1Q9NWB6 273 aaPredicted RBP10.8□□□□□ -0.68
SYNE1-224ENST00000478916 NOL8Q76FK4 1167 aaKnown RBP10.8□□□□□ -0.68
SYNE1-224ENST00000478916 ATF3P18847 181 aa10.8□□□□□ -0.68
SYNE1-224ENST00000478916 FOXD4L5Q5VV16 416 aaPredicted RBP10.8□□□□□ -0.68
SYNE1-224ENST00000478916 FAM43AQ8N2R8 423 aa10.8□□□□□ -0.68
SYNE1-224ENST00000478916 FOXD4L4Q8WXT5 416 aaPredicted RBP10.8□□□□□ -0.68
SYNE1-224ENST00000478916 H3BQV1 296 aa10.79□□□□□ -0.68
SYNE1-224ENST00000478916 IFFO2Q5TF58 517 aa10.79□□□□□ -0.68
SYNE1-224ENST00000478916 RUFY1Q96T51 708 aa10.79□□□□□ -0.68
SYNE1-224ENST00000478916 PKNOX2Q96KN3 472 aa10.79□□□□□ -0.68
SYNE1-224ENST00000478916 NEXNQ0ZGT2 675 aa10.79□□□□□ -0.68
SYNE1-224ENST00000478916 CCDC66A2RUB6 948 aa10.79□□□□□ -0.68
SYNE1-224ENST00000478916 CHMP4CQ96CF2 233 aa10.79□□□□□ -0.68
SYNE1-224ENST00000478916 PANK3Q9H999 370 aa10.79□□□□□ -0.68
SYNE1-224ENST00000478916 ST20-MTHFSA0A0A6YYL1 179 aa10.79□□□□□ -0.68
SYNE1-224ENST00000478916 RDXP35241 583 aaKnown RBP10.79□□□□□ -0.68
SYNE1-224ENST00000478916 TOMM22Q9NS69 142 aa10.79□□□□□ -0.68
SYNE1-224ENST00000478916 CCDC191Q8NCU4 936 aa10.78□□□□□ -0.68
SYNE1-224ENST00000478916 HOMER1Q86YM7 354 aa10.78□□□□□ -0.68
SYNE1-224ENST00000478916 IPO7O95373 1038 aaKnown RBP10.78□□□□□ -0.68
SYNE1-224ENST00000478916 RAD54L2Q9Y4B4 1467 aa10.78□□□□□ -0.68
SYNE1-224ENST00000478916 STAC3Q96MF2 364 aa10.77□□□□□ -0.68
SYNE1-224ENST00000478916 LRRFIP1Q32MZ4 808 aaKnown RBP10.77□□□□□ -0.69
SYNE1-224ENST00000478916 NOL10Q9BSC4 688 aaKnown RBP10.77□□□□□ -0.69
SYNE1-224ENST00000478916 FAM161AQ3B820 660 aa10.76□□□□□ -0.69
SYNE1-224ENST00000478916 AMOTL1Q8IY63 956 aa10.76□□□□□ -0.69
SYNE1-224ENST00000478916 HSP90B2PQ58FF3 399 aa10.76□□□□□ -0.69
SYNE1-224ENST00000478916 CLUAP1Q96AJ1 413 aa10.76□□□□□ -0.69
SYNE1-224ENST00000478916 DHX57Q6P158 1386 aaKnown RBP10.76□□□□□ -0.69
SYNE1-224ENST00000478916 FAM184AQ8NB25 1140 aa10.76□□□□□ -0.69
SYNE1-224ENST00000478916 GRIN2BQ13224 1484 aa10.76□□□□□ -0.69
SYNE1-224ENST00000478916 USP47Q96K76 1375 aa10.76□□□□□ -0.69
SYNE1-224ENST00000478916 MIA2Q96PC5 1412 aa10.76□□□□□ -0.69
SYNE1-224ENST00000478916 MARCH6O60337 910 aa10.75□□□□□ -0.69
SYNE1-224ENST00000478916 DIAPH3Q9NSV4 1193 aa10.75□□□□□ -0.69
SYNE1-224ENST00000478916 DCTN1Q14203 1278 aa10.75□□□□□ -0.69
SYNE1-224ENST00000478916 TRIM34Q9BYJ4 488 aa10.75□□□□□ -0.69
SYNE1-224ENST00000478916 NCAPD3P42695 1498 aa10.75□□□□□ -0.69
SYNE1-224ENST00000478916 AQRO60306 1485 aaKnown RBP eCLIP10.74□□□□□ -0.69
SYNE1-224ENST00000478916 H0YHG0 523 aa10.74□□□□□ -0.69
SYNE1-224ENST00000478916 VPS53Q5VIR6 699 aa10.74□□□□□ -0.69
SYNE1-224ENST00000478916 SYTL4Q96C24 671 aaPredicted RBP10.74□□□□□ -0.69
SYNE1-224ENST00000478916 ARHGAP5Q13017 1502 aa10.74□□□□□ -0.69
SYNE1-224ENST00000478916 ANKRD20A12PQ8NF67 263 aa10.74□□□□□ -0.69
SYNE1-224ENST00000478916 FANCIQ9NVI1 1328 aa10.74□□□□□ -0.69
SYNE1-224ENST00000478916 CENPQQ7L2Z9 268 aaPredicted RBP10.74□□□□□ -0.69
SYNE1-224ENST00000478916 RRP7AQ9Y3A4 280 aaKnown RBP10.74□□□□□ -0.69
SYNE1-224ENST00000478916 IGF1RP08069 1367 aa10.74□□□□□ -0.69
SYNE1-224ENST00000478916 MNS1Q8NEH6 495 aa10.74□□□□□ -0.69
SYNE1-224ENST00000478916 DIAPH1O60610 1272 aaKnown RBP10.74□□□□□ -0.69
SYNE1-224ENST00000478916 DDX58O95786 925 aaKnown RBP10.74□□□□□ -0.69
SYNE1-224ENST00000478916 E9PSI1 815 aa10.74□□□□□ -0.69
SYNE1-224ENST00000478916 PDE4AP27815 886 aa10.73□□□□□ -0.69
SYNE1-224ENST00000478916 SYNJ2O15056 1496 aa10.73□□□□□ -0.69
SYNE1-224ENST00000478916 PCMTD1Q96MG8 357 aaPredicted RBP10.73□□□□□ -0.69
SYNE1-224ENST00000478916 PODXL2Q9NZ53 605 aa10.73□□□□□ -0.69
SYNE1-224ENST00000478916 C9orf78Q9NZ63 289 aaPredicted RBP10.72□□□□□ -0.69
SYNE1-224ENST00000478916 RAPGEF4Q8WZA2 1011 aa10.72□□□□□ -0.69
SYNE1-224ENST00000478916 MRC2Q9UBG0 1479 aa10.72□□□□□ -0.69
SYNE1-224ENST00000478916 HOOK1Q9UJC3 728 aaKnown RBP10.72□□□□□ -0.69
SYNE1-224ENST00000478916 ZKSCAN2Q63HK3 967 aa10.71□□□□□ -0.69
SYNE1-224ENST00000478916 ROCK1Q13464 1354 aa10.71□□□□□ -0.7
SYNE1-224ENST00000478916 EIF2S2P20042 333 aaKnown RBP10.71□□□□□ -0.7
SYNE1-224ENST00000478916 CTDP1Q9Y5B0 961 aaPredicted RBP10.71□□□□□ -0.7
SYNE1-224ENST00000478916 ERCC4Q92889 916 aaPredicted RBP10.71□□□□□ -0.7
SYNE1-224ENST00000478916 SLC4A3P48751 1232 aa10.71□□□□□ -0.7
SYNE1-224ENST00000478916 AKAP17AQ02040 695 aaKnown RBP10.71□□□□□ -0.7
SYNE1-224ENST00000478916 VPS37DQ86XT2 251 aa10.7□□□□□ -0.7
SYNE1-224ENST00000478916 NGEFQ8N5V2 710 aa10.7□□□□□ -0.7
SYNE1-224ENST00000478916 ANO8Q9HCE9 1232 aaPredicted RBP10.7□□□□□ -0.7
SYNE1-224ENST00000478916 IFT57Q9NWB7 429 aa10.7□□□□□ -0.7
SYNE1-224ENST00000478916 FBXO3Q9UK99 471 aa10.7□□□□□ -0.7
SYNE1-224ENST00000478916 FOXD4L6Q3SYB3 417 aaPredicted RBP10.7□□□□□ -0.7
SYNE1-224ENST00000478916 FOXD4L3Q6VB84 417 aaPredicted RBP10.7□□□□□ -0.7
SYNE1-224ENST00000478916 RUSC2Q8N2Y8 1516 aa10.7□□□□□ -0.7
SYNE1-224ENST00000478916 FYCO1Q9BQS8 1478 aa10.7□□□□□ -0.7
SYNE1-224ENST00000478916 WASHC2AQ641Q2 1341 aa10.7□□□□□ -0.7
SYNE1-224ENST00000478916 CCDC47Q96A33 483 aaKnown RBP10.7□□□□□ -0.7
SYNE1-224ENST00000478916 FGD6Q6ZV73 1430 aa10.7□□□□□ -0.7
SYNE1-224ENST00000478916 GPRASP1Q5JY77 1395 aa10.7□□□□□ -0.7
SYNE1-224ENST00000478916 SYNE3Q6ZMZ3 975 aa10.7□□□□□ -0.7
SYNE1-224ENST00000478916 CCDC39Q9UFE4 941 aa10.7□□□□□ -0.7
SYNE1-224ENST00000478916 R3HCC1Q9Y3T6 440 aaKnown RBP10.7□□□□□ -0.7
SYNE1-224ENST00000478916 ELL2O00472 640 aaPredicted RBP10.7□□□□□ -0.7
SYNE1-224ENST00000478916 IFT140Q96RY7 1462 aa10.69□□□□□ -0.7
SYNE1-224ENST00000478916 CHMP5Q9NZZ3 219 aa10.69□□□□□ -0.7
SYNE1-224ENST00000478916 RRBP1Q9P2E9 1410 aaKnown RBP10.69□□□□□ -0.7
SYNE1-224ENST00000478916 PRG4Q92954 1404 aaPredicted RBP10.69□□□□□ -0.7
SYNE1-224ENST00000478916 TCEAL9Q9UHQ7 104 aa10.69□□□□□ -0.7
SYNE1-224ENST00000478916 MCTP1Q6DN14 999 aa10.68□□□□□ -0.7
SYNE1-224ENST00000478916 SASS6Q6UVJ0 657 aa10.68□□□□□ -0.7
SYNE1-224ENST00000478916 RILPL2Q969X0 211 aa10.68□□□□□ -0.7
SYNE1-224ENST00000478916 LEKR1Q6ZMV7 388 aa10.68□□□□□ -0.7
SYNE1-224ENST00000478916 ANKRD50Q9ULJ7 1429 aa10.68□□□□□ -0.7
SYNE1-224ENST00000478916 PHF23Q9BUL5 403 aaPredicted RBP10.68□□□□□ -0.7
SYNE1-224ENST00000478916 RUFY2Q8WXA3 655 aa10.67□□□□□ -0.7
SYNE1-224ENST00000478916 API5Q9BZZ5 524 aaKnown RBP10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms