RNA–Protein interactions for RNA: ENST00000477538.1

VHL-203, Transcript of von Hippel-Lindau tumor suppressor, humanhuman

TSL 1 (best)

Gene VHL, Length 958 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VHL-203ENST00000477538 RPGRIP1LQ68CZ1 1315 aa23.35■■□□□ 1.33
VHL-203ENST00000477538 RIMS2Q9UQ26 1411 aa23.35■■□□□ 1.33
VHL-203ENST00000477538 TMEM2Q9UHN6 1383 aa23.35■■□□□ 1.33
VHL-203ENST00000477538 ZFYVE9O95405 1425 aa23.34■■□□□ 1.33
VHL-203ENST00000477538 TIMELESSQ9UNS1 1208 aa23.34■■□□□ 1.33
VHL-203ENST00000477538 MYOM2P54296 1465 aa23.33■■□□□ 1.33
VHL-203ENST00000477538 DCAF11Q8TEB1 546 aa23.32■■□□□ 1.32
VHL-203ENST00000477538 KDM2AQ9Y2K7 1162 aa23.29■■□□□ 1.32
VHL-203ENST00000477538 SCAF11Q99590 1463 aaKnown RBP23.28■■□□□ 1.32
VHL-203ENST00000477538 IQGAP1P46940 1657 aa23.28■■□□□ 1.32
VHL-203ENST00000477538 HDGFP51858 240 aaKnown RBP23.27■■□□□ 1.32
VHL-203ENST00000477538 NUTM2DQ5VT03 806 aaPredicted RBP23.27■■□□□ 1.32
VHL-203ENST00000477538 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.27■■□□□ 1.32
VHL-203ENST00000477538 STAC3Q96MF2 364 aa23.27■■□□□ 1.32
VHL-203ENST00000477538 STRCQ7RTU9 1775 aa23.27■■□□□ 1.32
VHL-203ENST00000477538 NRXN1Q9ULB1 1477 aa23.26■■□□□ 1.31
VHL-203ENST00000477538 EID1Q9Y6B2 187 aa23.26■■□□□ 1.31
VHL-203ENST00000477538 KIAA1210Q9ULL0 1709 aa23.25■■□□□ 1.31
VHL-203ENST00000477538 VGFO15240 615 aaPredicted RBP23.25■■□□□ 1.31
VHL-203ENST00000477538 PPP1R15AO75807 674 aaPredicted RBP23.25■■□□□ 1.31
VHL-203ENST00000477538 LAMC1P11047 1609 aa23.25■■□□□ 1.31
VHL-203ENST00000477538 NRXN3Q9Y4C0 1643 aa23.25■■□□□ 1.31
VHL-203ENST00000477538 TRPM1Q7Z4N2 1603 aa23.24■■□□□ 1.31
VHL-203ENST00000477538 HSPA2P54652 639 aa23.24■■□□□ 1.31
VHL-203ENST00000477538 AEBP2Q6ZN18 517 aaPredicted RBP23.24■■□□□ 1.31
VHL-203ENST00000477538 TXNDC2Q86VQ3 553 aa23.24■■□□□ 1.31
VHL-203ENST00000477538 ADGRF5Q8IZF2 1346 aa23.24■■□□□ 1.31
VHL-203ENST00000477538 PRAG1Q86YV5 1406 aa23.24■■□□□ 1.31
VHL-203ENST00000477538 SETD1AO15047 1707 aaKnown RBP23.23■■□□□ 1.31
VHL-203ENST00000477538 LTKP29376 864 aa23.23■■□□□ 1.31
VHL-203ENST00000477538 ZEB1P37275 1124 aaPredicted RBP23.23■■□□□ 1.31
VHL-203ENST00000477538 SETBP1Q9Y6X0 1596 aa23.23■■□□□ 1.31
VHL-203ENST00000477538 ANKLE2Q86XL3 938 aa23.22■■□□□ 1.31
VHL-203ENST00000477538 PIK3C2GO75747 1445 aa23.22■■□□□ 1.31
VHL-203ENST00000477538 PLEKHG1Q9ULL1 1385 aa23.2■■□□□ 1.3
VHL-203ENST00000477538 ALKQ9UM73 1620 aa23.18■■□□□ 1.3
VHL-203ENST00000477538 MED14O60244 1454 aa23.17■■□□□ 1.3
VHL-203ENST00000477538 NCKAP5LQ9HCH0 1330 aa23.16■■□□□ 1.3
VHL-203ENST00000477538 NBPF8Q3BBV2 869 aa23.16■■□□□ 1.3
VHL-203ENST00000477538 SENP3Q9H4L4 574 aaPredicted RBP23.16■■□□□ 1.3
VHL-203ENST00000477538 DIP2AQ14689 1571 aa23.15■■□□□ 1.3
VHL-203ENST00000477538 NPHP4O75161 1426 aaPredicted RBP23.15■■□□□ 1.3
VHL-203ENST00000477538 RALGAPBQ86X10 1494 aa23.13■■□□□ 1.29
VHL-203ENST00000477538 BCANQ96GW7 911 aa23.13■■□□□ 1.29
VHL-203ENST00000477538 ADAMTS13Q76LX8 1427 aa23.12■■□□□ 1.29
VHL-203ENST00000477538 ASXL1Q8IXJ9 1541 aa23.09■■□□□ 1.29
VHL-203ENST00000477538 CFAP70Q5T0N1 1121 aa23.09■■□□□ 1.29
VHL-203ENST00000477538 C14orf93Q9H972 538 aaKnown RBP23.09■■□□□ 1.29
VHL-203ENST00000477538 CHD2O14647 1828 aaKnown RBP23.09■■□□□ 1.29
VHL-203ENST00000477538 ADGRB1O14514 1584 aa23.07■■□□□ 1.28
VHL-203ENST00000477538 SLC26A8Q96RN1 970 aa23.06■■□□□ 1.28
VHL-203ENST00000477538 KNDC1Q76NI1 1749 aa23.05■■□□□ 1.28
VHL-203ENST00000477538 ROCK2O75116 1388 aaKnown RBP23.05■■□□□ 1.28
VHL-203ENST00000477538 NBPF1Q3BBV0 1214 aa23.04■■□□□ 1.28
VHL-203ENST00000477538 TBX22Q9Y458 520 aa23.03■■□□□ 1.28
VHL-203ENST00000477538 GPRASP1Q5JY77 1395 aa23.02■■□□□ 1.28
VHL-203ENST00000477538 ARHGEF28Q8N1W1 1705 aaKnown RBP23.02■■□□□ 1.28
VHL-203ENST00000477538 METP08581 1390 aa23.01■■□□□ 1.27
VHL-203ENST00000477538 XRN1Q8IZH2 1706 aaKnown RBP23.01■■□□□ 1.27
VHL-203ENST00000477538 TMEM132EQ6IEE7 984 aa23■■□□□ 1.27
VHL-203ENST00000477538 STRCP1A6NGW2 1772 aa22.99■■□□□ 1.27
VHL-203ENST00000477538 PIK3R4Q99570 1358 aa22.98■■□□□ 1.27
VHL-203ENST00000477538 YTHDC2Q9H6S0 1430 aaKnown RBP22.98■■□□□ 1.27
VHL-203ENST00000477538 NWD1Q149M9 1564 aa22.97■■□□□ 1.27
VHL-203ENST00000477538 CARD11Q9BXL7 1154 aa22.97■■□□□ 1.27
VHL-203ENST00000477538 DMRT2Q9Y5R5 561 aa22.97■■□□□ 1.27
VHL-203ENST00000477538 PTPRUQ92729 1446 aa22.96■■□□□ 1.27
VHL-203ENST00000477538 CPS1P31327 1500 aa22.95■■□□□ 1.26
VHL-203ENST00000477538 LRPPRCP42704 1394 aaKnown RBP22.94■■□□□ 1.26
VHL-203ENST00000477538 QRICH2Q9H0J4 1663 aa22.93■■□□□ 1.26
VHL-203ENST00000477538 DLC1Q96QB1 1528 aa22.92■■□□□ 1.26
VHL-203ENST00000477538 TECPR2O15040 1411 aa22.91■■□□□ 1.26
VHL-203ENST00000477538 STK26Q9P289 416 aa22.91■■□□□ 1.26
VHL-203ENST00000477538 ABCC11Q96J66 1382 aa22.9■■□□□ 1.26
VHL-203ENST00000477538 TRAK1Q9UPV9 953 aa22.9■■□□□ 1.26
VHL-203ENST00000477538 USP47Q96K76 1375 aa22.89■■□□□ 1.26
VHL-203ENST00000477538 AMOTL2Q9Y2J4 779 aa22.89■■□□□ 1.25
VHL-203ENST00000477538 EIF3AQ14152 1382 aaKnown RBP22.89■■□□□ 1.25
VHL-203ENST00000477538 NKTRP30414 1462 aaKnown RBP22.87■■□□□ 1.25
VHL-203ENST00000477538 KCNA6P17658 529 aa22.87■■□□□ 1.25
VHL-203ENST00000477538 PTCH1Q13635 1447 aa22.87■■□□□ 1.25
VHL-203ENST00000477538 XIRP1Q702N8 1843 aaKnown RBP22.86■■□□□ 1.25
VHL-203ENST00000477538 EIF4G2P78344 907 aaKnown RBP eCLIP22.84■■□□□ 1.25
VHL-203ENST00000477538 FAM135BQ49AJ0 1406 aa22.83■■□□□ 1.25
VHL-203ENST00000477538 ROBO2Q9HCK4 1378 aa22.83■■□□□ 1.25
VHL-203ENST00000477538 ZNF335Q9H4Z2 1342 aaPredicted RBP22.82■■□□□ 1.24
VHL-203ENST00000477538 NALCNQ8IZF0 1738 aa22.82■■□□□ 1.24
VHL-203ENST00000477538 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.82■■□□□ 1.24
VHL-203ENST00000477538 HSPA5P11021 654 aaKnown RBP22.81■■□□□ 1.24
VHL-203ENST00000477538 SIRT1Q96EB6 747 aa22.81■■□□□ 1.24
VHL-203ENST00000477538 PRAM1Q96QH2 718 aa22.8■■□□□ 1.24
VHL-203ENST00000477538 CENPJQ9HC77 1338 aaPredicted RBP22.8■■□□□ 1.24
VHL-203ENST00000477538 PLEKHH1Q9ULM0 1364 aa22.79■■□□□ 1.24
VHL-203ENST00000477538 POGKQ9P215 609 aa22.79■■□□□ 1.24
VHL-203ENST00000477538 ST20-MTHFSA0A0A6YYL1 179 aa22.78■■□□□ 1.24
VHL-203ENST00000477538 WAPLQ7Z5K2 1190 aa22.78■■□□□ 1.24
VHL-203ENST00000477538 LTBP4Q8N2S1 1624 aa22.76■■□□□ 1.23
VHL-203ENST00000477538 SAFB2Q14151 953 aaKnown RBP eCLIP22.76■■□□□ 1.23
VHL-203ENST00000477538 ADGRB2O60241 1585 aa22.76■■□□□ 1.23
VHL-203ENST00000477538 PROSER2Q86WR7 435 aaPredicted RBP22.75■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms