RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 Q6ZNB5 142 aa11.86□□□□□ -0.51
CCDC88A-213ENST00000476903 ERICH3Q5RHP9 1530 aa11.86□□□□□ -0.51
CCDC88A-213ENST00000476903 ARAP1Q96P48 1450 aa11.84□□□□□ -0.51
CCDC88A-213ENST00000476903 DPYSL4O14531 572 aa11.84□□□□□ -0.51
CCDC88A-213ENST00000476903 TSR3Q9UJK0 312 aaKnown RBP11.84□□□□□ -0.51
CCDC88A-213ENST00000476903 GRIN2AQ12879 1464 aa11.83□□□□□ -0.52
CCDC88A-213ENST00000476903 CYB5RLQ6IPT4 315 aa11.83□□□□□ -0.52
CCDC88A-213ENST00000476903 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.82□□□□□ -0.52
CCDC88A-213ENST00000476903 HPS5Q9UPZ3 1129 aa11.82□□□□□ -0.52
CCDC88A-213ENST00000476903 FHAD1B1AJZ9 1412 aa11.82□□□□□ -0.52
CCDC88A-213ENST00000476903 RBM33Q96EV2 1170 aaKnown RBP11.81□□□□□ -0.52
CCDC88A-213ENST00000476903 TSKSQ9UJT2 592 aa11.81□□□□□ -0.52
CCDC88A-213ENST00000476903 DDX12PQ92771 950 aa11.79□□□□□ -0.52
CCDC88A-213ENST00000476903 LRCH3Q96II8 777 aa11.79□□□□□ -0.52
CCDC88A-213ENST00000476903 CEP170Q5SW79 1584 aa11.79□□□□□ -0.52
CCDC88A-213ENST00000476903 NUP160Q12769 1436 aa11.78□□□□□ -0.52
CCDC88A-213ENST00000476903 TJAP1Q5JTD0 557 aa11.77□□□□□ -0.53
CCDC88A-213ENST00000476903 TSR1Q2NL82 804 aaKnown RBP11.76□□□□□ -0.53
CCDC88A-213ENST00000476903 EN1Q05925 392 aaPredicted RBP11.75□□□□□ -0.53
CCDC88A-213ENST00000476903 LAPTM4AQ15012 233 aa11.74□□□□□ -0.53
CCDC88A-213ENST00000476903 FAM198AQ9UFP1 575 aa11.74□□□□□ -0.53
CCDC88A-213ENST00000476903 KIF27Q86VH2 1401 aa11.74□□□□□ -0.53
CCDC88A-213ENST00000476903 SHROOM2Q13796 1616 aa11.74□□□□□ -0.53
CCDC88A-213ENST00000476903 CUL7Q14999 1698 aa11.74□□□□□ -0.53
CCDC88A-213ENST00000476903 C3orf80F5H4A9 247 aa11.73□□□□□ -0.53
CCDC88A-213ENST00000476903 PACS2Q86VP3 889 aa11.72□□□□□ -0.53
CCDC88A-213ENST00000476903 GFRA3O60609 400 aa11.71□□□□□ -0.53
CCDC88A-213ENST00000476903 ERCC6L2Q5T890 1561 aa11.71□□□□□ -0.54
CCDC88A-213ENST00000476903 PRIM1P49642 420 aaKnown RBP11.7□□□□□ -0.54
CCDC88A-213ENST00000476903 NBR1Q14596 966 aa11.7□□□□□ -0.54
CCDC88A-213ENST00000476903 TRAF7Q6Q0C0 670 aa11.7□□□□□ -0.54
CCDC88A-213ENST00000476903 RUSC2Q8N2Y8 1516 aa11.7□□□□□ -0.54
CCDC88A-213ENST00000476903 IGF1RP08069 1367 aa11.69□□□□□ -0.54
CCDC88A-213ENST00000476903 PPP4CP60510 307 aa11.69□□□□□ -0.54
CCDC88A-213ENST00000476903 PDIA6Q15084 440 aa11.69□□□□□ -0.54
CCDC88A-213ENST00000476903 SMAPO00193 183 aa11.68□□□□□ -0.54
CCDC88A-213ENST00000476903 MAP3K7O43318 606 aa11.68□□□□□ -0.54
CCDC88A-213ENST00000476903 SAMD7Q7Z3H4 446 aa11.68□□□□□ -0.54
CCDC88A-213ENST00000476903 CDCA7LQ96GN5 454 aa11.67□□□□□ -0.54
CCDC88A-213ENST00000476903 PRKD2Q9BZL6 878 aa11.66□□□□□ -0.54
CCDC88A-213ENST00000476903 PRSS12P56730 875 aa11.65□□□□□ -0.54
CCDC88A-213ENST00000476903 MTRQ99707 1265 aa11.65□□□□□ -0.54
CCDC88A-213ENST00000476903 PRG4Q92954 1404 aaPredicted RBP11.65□□□□□ -0.54
CCDC88A-213ENST00000476903 PPP1R18Q6NYC8 613 aa11.64□□□□□ -0.55
CCDC88A-213ENST00000476903 ZNF516Q92618 1163 aa11.63□□□□□ -0.55
CCDC88A-213ENST00000476903 KIAA0586Q9BVV6 1533 aa11.63□□□□□ -0.55
CCDC88A-213ENST00000476903 CARMIL1Q5VZK9 1371 aa11.63□□□□□ -0.55
CCDC88A-213ENST00000476903 NRG2O14511 850 aaPredicted RBP11.62□□□□□ -0.55
CCDC88A-213ENST00000476903 IL21Q9HBE4 155 aa11.62□□□□□ -0.55
CCDC88A-213ENST00000476903 TATDN2Q93075 761 aa11.61□□□□□ -0.55
CCDC88A-213ENST00000476903 V9GY48 417 aaPredicted RBP11.61□□□□□ -0.55
CCDC88A-213ENST00000476903 SPDYE16A6NNV3 312 aaPredicted RBP11.6□□□□□ -0.55
CCDC88A-213ENST00000476903 APLP1P51693 650 aa11.58□□□□□ -0.56
CCDC88A-213ENST00000476903 CERKQ8TCT0 537 aa11.58□□□□□ -0.56
CCDC88A-213ENST00000476903 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.57□□□□□ -0.56
CCDC88A-213ENST00000476903 PNMA3Q9UL41 463 aa11.57□□□□□ -0.56
CCDC88A-213ENST00000476903 IQGAP2Q13576 1575 aa11.56□□□□□ -0.56
CCDC88A-213ENST00000476903 NKX2-3Q8TAU0 364 aa11.56□□□□□ -0.56
CCDC88A-213ENST00000476903 RAPGEF2Q9Y4G8 1499 aa11.56□□□□□ -0.56
CCDC88A-213ENST00000476903 ARIH1Q9Y4X5 557 aaPredicted RBP11.55□□□□□ -0.56
CCDC88A-213ENST00000476903 NBPF26B4DH59 902 aa11.54□□□□□ -0.56
CCDC88A-213ENST00000476903 CDHR5Q9HBB8 845 aa11.54□□□□□ -0.56
CCDC88A-213ENST00000476903 ADCY10Q96PN6 1610 aa11.53□□□□□ -0.56
CCDC88A-213ENST00000476903 OSBPP22059 807 aa11.53□□□□□ -0.56
CCDC88A-213ENST00000476903 NUDT18Q6ZVK8 323 aa11.53□□□□□ -0.56
CCDC88A-213ENST00000476903 TTC13Q8NBP0 860 aa11.53□□□□□ -0.56
CCDC88A-213ENST00000476903 CARMIL2Q6F5E8 1435 aa11.52□□□□□ -0.56
CCDC88A-213ENST00000476903 KIF13AQ9H1H9 1805 aa11.51□□□□□ -0.57
CCDC88A-213ENST00000476903 RBM27Q9P2N5 1060 aaKnown RBP11.51□□□□□ -0.57
CCDC88A-213ENST00000476903 CTTNBP2Q8WZ74 1663 aa11.51□□□□□ -0.57
CCDC88A-213ENST00000476903 GRXCR2A6NFK2 248 aa11.5□□□□□ -0.57
CCDC88A-213ENST00000476903 TNIKQ9UKE5 1360 aa11.49□□□□□ -0.57
CCDC88A-213ENST00000476903 PTPRGP23470 1445 aa11.49□□□□□ -0.57
CCDC88A-213ENST00000476903 MAPKBP1O60336 1514 aa11.49□□□□□ -0.57
CCDC88A-213ENST00000476903 NPDC1Q9NQX5 325 aaPredicted RBP11.48□□□□□ -0.57
CCDC88A-213ENST00000476903 PDZRN3Q9UPQ7 1066 aa11.48□□□□□ -0.57
CCDC88A-213ENST00000476903 UGGT2Q9NYU1 1516 aa11.48□□□□□ -0.57
CCDC88A-213ENST00000476903 E2F4Q16254 413 aa11.47□□□□□ -0.57
CCDC88A-213ENST00000476903 BBXQ8WY36 941 aaPredicted RBP11.47□□□□□ -0.57
CCDC88A-213ENST00000476903 DISP1Q96F81 1524 aa11.46□□□□□ -0.57
CCDC88A-213ENST00000476903 KIAA0556O60303 1618 aa11.46□□□□□ -0.58
CCDC88A-213ENST00000476903 PRXQ9BXM0 1461 aa11.45□□□□□ -0.58
CCDC88A-213ENST00000476903 SWT1Q5T5J6 900 aaKnown RBP11.45□□□□□ -0.58
CCDC88A-213ENST00000476903 ZNF787Q6DD87 383 aa11.45□□□□□ -0.58
CCDC88A-213ENST00000476903 EMID1Q96A84 441 aaPredicted RBP11.45□□□□□ -0.58
CCDC88A-213ENST00000476903 TTBK1Q5TCY1 1321 aaPredicted RBP11.44□□□□□ -0.58
CCDC88A-213ENST00000476903 RNF40O75150 1001 aa11.44□□□□□ -0.58
CCDC88A-213ENST00000476903 TRIM67Q6ZTA4 783 aa11.44□□□□□ -0.58
CCDC88A-213ENST00000476903 ABCC10Q5T3U5 1492 aa11.44□□□□□ -0.58
CCDC88A-213ENST00000476903 DIP2BQ9P265 1576 aa11.43□□□□□ -0.58
CCDC88A-213ENST00000476903 COPS2P61201 443 aa11.43□□□□□ -0.58
CCDC88A-213ENST00000476903 TMUB1Q9BVT8 246 aa11.43□□□□□ -0.58
CCDC88A-213ENST00000476903 ABCC2Q92887 1545 aa11.42□□□□□ -0.58
CCDC88A-213ENST00000476903 HDGFP51858 240 aaKnown RBP11.42□□□□□ -0.58
CCDC88A-213ENST00000476903 UHRF1BP1LA0JNW5 1464 aa11.42□□□□□ -0.58
CCDC88A-213ENST00000476903 GOLGA3Q08378 1498 aa11.41□□□□□ -0.58
CCDC88A-213ENST00000476903 FAM69CQ0P6D2 419 aa11.41□□□□□ -0.58
CCDC88A-213ENST00000476903 PADI6Q6TGC4 694 aa11.41□□□□□ -0.58
CCDC88A-213ENST00000476903 ZNF775Q96BV0 537 aaPredicted RBP11.41□□□□□ -0.58
CCDC88A-213ENST00000476903 EYA1Q99502 592 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms