RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 TBX22Q9Y458 520 aa18.15■□□□□ 0.5
SYNE1-223ENST00000476519 GCC2Q8IWJ2 1684 aa18.15■□□□□ 0.5
SYNE1-223ENST00000476519 PLEKHG1Q9ULL1 1385 aa18.15■□□□□ 0.5
SYNE1-223ENST00000476519 HFM1A2PYH4 1435 aa18.14■□□□□ 0.49
SYNE1-223ENST00000476519 TRIM52Q96A61 297 aa18.13■□□□□ 0.49
SYNE1-223ENST00000476519 HSPA1LP34931 641 aa18.12■□□□□ 0.49
SYNE1-223ENST00000476519 PROSER2Q86WR7 435 aaPredicted RBP18.12■□□□□ 0.49
SYNE1-223ENST00000476519 E9PCH4 1651 aa18.12■□□□□ 0.49
SYNE1-223ENST00000476519 TMEM131LA2VDJ0 1609 aa18.1■□□□□ 0.49
SYNE1-223ENST00000476519 TMEM94Q12767 1356 aa18.09■□□□□ 0.49
SYNE1-223ENST00000476519 NUTM2DQ5VT03 806 aaPredicted RBP18.09■□□□□ 0.49
SYNE1-223ENST00000476519 DISP3Q9P2K9 1392 aa18.08■□□□□ 0.49
SYNE1-223ENST00000476519 SLC4A1APQ9BWU0 796 aaKnown RBP18.08■□□□□ 0.48
SYNE1-223ENST00000476519 STRCP1A6NGW2 1772 aa18.07■□□□□ 0.48
SYNE1-223ENST00000476519 ACIN1Q9UKV3 1341 aaKnown RBP18.06■□□□□ 0.48
SYNE1-223ENST00000476519 ZNF326Q5BKZ1 582 aaKnown RBP18.06■□□□□ 0.48
SYNE1-223ENST00000476519 SENP3Q9H4L4 574 aaPredicted RBP18.06■□□□□ 0.48
SYNE1-223ENST00000476519 PIK3R4Q99570 1358 aa18.05■□□□□ 0.48
SYNE1-223ENST00000476519 ADAMTS13Q76LX8 1427 aa18.03■□□□□ 0.48
SYNE1-223ENST00000476519 NKTRP30414 1462 aaKnown RBP18.02■□□□□ 0.48
SYNE1-223ENST00000476519 ALKQ9UM73 1620 aa18.02■□□□□ 0.48
SYNE1-223ENST00000476519 RBM33Q96EV2 1170 aaKnown RBP18.02■□□□□ 0.48
SYNE1-223ENST00000476519 FAM135BQ49AJ0 1406 aa18■□□□□ 0.47
SYNE1-223ENST00000476519 NCOA3Q9Y6Q9 1424 aa18■□□□□ 0.47
SYNE1-223ENST00000476519 MSH6P52701 1360 aa18■□□□□ 0.47
SYNE1-223ENST00000476519 VGFO15240 615 aaPredicted RBP17.99■□□□□ 0.47
SYNE1-223ENST00000476519 AMOTL2Q9Y2J4 779 aa17.99■□□□□ 0.47
SYNE1-223ENST00000476519 RPGRIP1LQ68CZ1 1315 aa17.98■□□□□ 0.47
SYNE1-223ENST00000476519 TRPM2O94759 1503 aa17.98■□□□□ 0.47
SYNE1-223ENST00000476519 MPHOSPH9Q99550 1183 aa17.98■□□□□ 0.47
SYNE1-223ENST00000476519 SLAIN2Q9P270 581 aa17.98■□□□□ 0.47
SYNE1-223ENST00000476519 NWD1Q149M9 1564 aa17.97■□□□□ 0.47
SYNE1-223ENST00000476519 C19orf44Q9H6X5 657 aa17.97■□□□□ 0.47
SYNE1-223ENST00000476519 MYO5BQ9ULV0 1848 aa17.96■□□□□ 0.47
SYNE1-223ENST00000476519 SPHKAPQ2M3C7 1700 aa17.95■□□□□ 0.46
SYNE1-223ENST00000476519 C14orf37Q86TY3 774 aa17.95■□□□□ 0.46
SYNE1-223ENST00000476519 DIP2AQ14689 1571 aa17.95■□□□□ 0.46
SYNE1-223ENST00000476519 ILDR2Q71H61 639 aa17.94■□□□□ 0.46
SYNE1-223ENST00000476519 CADPS2Q86UW7 1296 aa17.94■□□□□ 0.46
SYNE1-223ENST00000476519 FOXD1Q16676 465 aa17.93■□□□□ 0.46
SYNE1-223ENST00000476519 SETD5Q9C0A6 1442 aa17.92■□□□□ 0.46
SYNE1-223ENST00000476519 ATF3P18847 181 aa17.92■□□□□ 0.46
SYNE1-223ENST00000476519 CHD2O14647 1828 aaKnown RBP17.91■□□□□ 0.46
SYNE1-223ENST00000476519 SETBP1Q9Y6X0 1596 aa17.91■□□□□ 0.46
SYNE1-223ENST00000476519 XIRP1Q702N8 1843 aaKnown RBP17.91■□□□□ 0.46
SYNE1-223ENST00000476519 METP08581 1390 aa17.91■□□□□ 0.46
SYNE1-223ENST00000476519 CLTCL1P53675 1640 aa17.9■□□□□ 0.46
SYNE1-223ENST00000476519 PTPRUQ92729 1446 aa17.9■□□□□ 0.46
SYNE1-223ENST00000476519 CCDC144AA2RUR9 1427 aa17.88■□□□□ 0.45
SYNE1-223ENST00000476519 NEXMIFQ5QGS0 1516 aa17.88■□□□□ 0.45
SYNE1-223ENST00000476519 HRCP23327 699 aa17.87■□□□□ 0.45
SYNE1-223ENST00000476519 SOCS7O14512 581 aa17.85■□□□□ 0.45
SYNE1-223ENST00000476519 RGL3Q3MIN7 710 aa17.85■□□□□ 0.45
SYNE1-223ENST00000476519 PHF23Q9BUL5 403 aaPredicted RBP17.84■□□□□ 0.45
SYNE1-223ENST00000476519 NRXN3Q9Y4C0 1643 aa17.83■□□□□ 0.44
SYNE1-223ENST00000476519 ANKRD30BQ9BXX2 1392 aa17.82■□□□□ 0.44
SYNE1-223ENST00000476519 RAB3GAP2Q9H2M9 1393 aa17.82■□□□□ 0.44
SYNE1-223ENST00000476519 KIF1BO60333 1816 aa17.82■□□□□ 0.44
SYNE1-223ENST00000476519 DCCP43146 1447 aa17.81■□□□□ 0.44
SYNE1-223ENST00000476519 SPATA31E1Q6ZUB1 1445 aa17.81■□□□□ 0.44
SYNE1-223ENST00000476519 ADGRF5Q8IZF2 1346 aa17.8■□□□□ 0.44
SYNE1-223ENST00000476519 MED1Q15648 1581 aaPredicted RBP17.8■□□□□ 0.44
SYNE1-223ENST00000476519 ROBO1Q9Y6N7 1651 aa17.78■□□□□ 0.44
SYNE1-223ENST00000476519 BRINP3Q76B58 766 aa17.78■□□□□ 0.44
SYNE1-223ENST00000476519 JCADQ9P266 1359 aa17.78■□□□□ 0.44
SYNE1-223ENST00000476519 XRN1Q8IZH2 1706 aaKnown RBP17.76■□□□□ 0.43
SYNE1-223ENST00000476519 PTCH1Q13635 1447 aa17.76■□□□□ 0.43
SYNE1-223ENST00000476519 ROBO2Q9HCK4 1378 aa17.76■□□□□ 0.43
SYNE1-223ENST00000476519 PRAG1Q86YV5 1406 aa17.75■□□□□ 0.43
SYNE1-223ENST00000476519 ADGRL3Q9HAR2 1447 aa17.75■□□□□ 0.43
SYNE1-223ENST00000476519 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.75■□□□□ 0.43
SYNE1-223ENST00000476519 C14orf93Q9H972 538 aaKnown RBP17.73■□□□□ 0.43
SYNE1-223ENST00000476519 RGS17Q9UGC6 210 aaPredicted RBP17.73■□□□□ 0.43
SYNE1-223ENST00000476519 MST1RQ04912 1400 aa17.72■□□□□ 0.43
SYNE1-223ENST00000476519 SPATA31A6Q5VVP1 1343 aa17.72■□□□□ 0.43
SYNE1-223ENST00000476519 ABCC11Q96J66 1382 aa17.71■□□□□ 0.43
SYNE1-223ENST00000476519 SIRT1Q96EB6 747 aa17.71■□□□□ 0.43
SYNE1-223ENST00000476519 STAC3Q96MF2 364 aa17.71■□□□□ 0.43
SYNE1-223ENST00000476519 LRPPRCP42704 1394 aaKnown RBP17.7■□□□□ 0.42
SYNE1-223ENST00000476519 TMEM132EQ6IEE7 984 aa17.7■□□□□ 0.42
SYNE1-223ENST00000476519 LRRC59Q96AG4 307 aaKnown RBP17.7■□□□□ 0.42
SYNE1-223ENST00000476519 STK26Q9P289 416 aa17.7■□□□□ 0.42
SYNE1-223ENST00000476519 PPLO60437 1756 aa17.69■□□□□ 0.42
SYNE1-223ENST00000476519 PIK3C2GO75747 1445 aa17.69■□□□□ 0.42
SYNE1-223ENST00000476519 AHDC1Q5TGY3 1603 aaPredicted RBP17.68■□□□□ 0.42
SYNE1-223ENST00000476519 TECPR2O15040 1411 aa17.66■□□□□ 0.42
SYNE1-223ENST00000476519 CFAP70Q5T0N1 1121 aa17.66■□□□□ 0.42
SYNE1-223ENST00000476519 WAPLQ7Z5K2 1190 aa17.66■□□□□ 0.42
SYNE1-223ENST00000476519 C1orf167Q5SNV9 1468 aa17.66■□□□□ 0.42
SYNE1-223ENST00000476519 PHLPP1O60346 1717 aa17.66■□□□□ 0.42
SYNE1-223ENST00000476519 ASXL1Q8IXJ9 1541 aa17.65■□□□□ 0.42
SYNE1-223ENST00000476519 COL16A1Q07092 1604 aaPredicted RBP17.65■□□□□ 0.42
SYNE1-223ENST00000476519 DHX57Q6P158 1386 aaKnown RBP17.65■□□□□ 0.42
SYNE1-223ENST00000476519 SETD1AO15047 1707 aaKnown RBP17.64■□□□□ 0.41
SYNE1-223ENST00000476519 ORAI2Q96SN7 254 aa17.64■□□□□ 0.41
SYNE1-223ENST00000476519 NRXN1Q9ULB1 1477 aa17.63■□□□□ 0.41
SYNE1-223ENST00000476519 YTHDC2Q9H6S0 1430 aaKnown RBP17.63■□□□□ 0.41
SYNE1-223ENST00000476519 MYOM2P54296 1465 aa17.63■□□□□ 0.41
SYNE1-223ENST00000476519 MEX3CQ5U5Q3 659 aaKnown RBP17.62■□□□□ 0.41
SYNE1-223ENST00000476519 POTEAQ6S8J7 498 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms