RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 NWD1Q149M9 1564 aa19.68■□□□□ 0.74
SKA3-206ENST00000475251 MSH6P52701 1360 aa19.68■□□□□ 0.74
SKA3-206ENST00000475251 BCANQ96GW7 911 aa19.67■□□□□ 0.74
SKA3-206ENST00000475251 RPRD2Q5VT52 1461 aaKnown RBP19.67■□□□□ 0.74
SKA3-206ENST00000475251 CHIC2Q9UKJ5 165 aa19.66■□□□□ 0.74
SKA3-206ENST00000475251 HDGFP51858 240 aaKnown RBP19.65■□□□□ 0.74
SKA3-206ENST00000475251 ADGRL2O95490 1459 aa19.63■□□□□ 0.73
SKA3-206ENST00000475251 POTEAQ6S8J7 498 aa19.61■□□□□ 0.73
SKA3-206ENST00000475251 RBM33Q96EV2 1170 aaKnown RBP19.61■□□□□ 0.73
SKA3-206ENST00000475251 SLAIN2Q9P270 581 aa19.61■□□□□ 0.73
SKA3-206ENST00000475251 PLEKHG1Q9ULL1 1385 aa19.6■□□□□ 0.73
SKA3-206ENST00000475251 PPP1R15AO75807 674 aaPredicted RBP19.6■□□□□ 0.73
SKA3-206ENST00000475251 PHLPP1O60346 1717 aa19.59■□□□□ 0.73
SKA3-206ENST00000475251 JCADQ9P266 1359 aa19.59■□□□□ 0.73
SKA3-206ENST00000475251 ANKRD50Q9ULJ7 1429 aa19.59■□□□□ 0.73
SKA3-206ENST00000475251 ZFYVE9O95405 1425 aa19.58■□□□□ 0.72
SKA3-206ENST00000475251 NCOA3Q9Y6Q9 1424 aa19.58■□□□□ 0.72
SKA3-206ENST00000475251 CHD2O14647 1828 aaKnown RBP19.57■□□□□ 0.72
SKA3-206ENST00000475251 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.56■□□□□ 0.72
SKA3-206ENST00000475251 RIMS2Q9UQ26 1411 aa19.56■□□□□ 0.72
SKA3-206ENST00000475251 GCC2Q8IWJ2 1684 aa19.56■□□□□ 0.72
SKA3-206ENST00000475251 TBX22Q9Y458 520 aa19.54■□□□□ 0.72
SKA3-206ENST00000475251 TMEM131LA2VDJ0 1609 aa19.54■□□□□ 0.72
SKA3-206ENST00000475251 FAM50AQ14320 339 aaKnown RBP19.53■□□□□ 0.72
SKA3-206ENST00000475251 C14orf37Q86TY3 774 aa19.53■□□□□ 0.72
SKA3-206ENST00000475251 MYO5BQ9ULV0 1848 aa19.53■□□□□ 0.72
SKA3-206ENST00000475251 DIP2AQ14689 1571 aa19.52■□□□□ 0.71
SKA3-206ENST00000475251 SPATA31A6Q5VVP1 1343 aa19.51■□□□□ 0.71
SKA3-206ENST00000475251 CADPS2Q86UW7 1296 aa19.51■□□□□ 0.71
SKA3-206ENST00000475251 PIK3R4Q99570 1358 aa19.51■□□□□ 0.71
SKA3-206ENST00000475251 COL16A1Q07092 1604 aaPredicted RBP19.51■□□□□ 0.71
SKA3-206ENST00000475251 CHGAP10645 457 aaKnown RBP19.49■□□□□ 0.71
SKA3-206ENST00000475251 UNC13BO14795 1591 aa19.49■□□□□ 0.71
SKA3-206ENST00000475251 ATF3P18847 181 aa19.48■□□□□ 0.71
SKA3-206ENST00000475251 C19orf44Q9H6X5 657 aa19.48■□□□□ 0.71
SKA3-206ENST00000475251 MEX3CQ5U5Q3 659 aaKnown RBP19.47■□□□□ 0.71
SKA3-206ENST00000475251 ZNF772Q68DY9 489 aaPredicted RBP19.47■□□□□ 0.71
SKA3-206ENST00000475251 SETD1AO15047 1707 aaKnown RBP19.46■□□□□ 0.71
SKA3-206ENST00000475251 AHDC1Q5TGY3 1603 aaPredicted RBP19.46■□□□□ 0.71
SKA3-206ENST00000475251 ADAMTS13Q76LX8 1427 aa19.45■□□□□ 0.7
SKA3-206ENST00000475251 TRPM2O94759 1503 aa19.45■□□□□ 0.7
SKA3-206ENST00000475251 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.45■□□□□ 0.7
SKA3-206ENST00000475251 E9PCH4 1651 aa19.43■□□□□ 0.7
SKA3-206ENST00000475251 SHPRHQ149N8 1683 aa19.43■□□□□ 0.7
SKA3-206ENST00000475251 LRP6O75581 1613 aa19.42■□□□□ 0.7
SKA3-206ENST00000475251 IQGAP3Q86VI3 1631 aa19.42■□□□□ 0.7
SKA3-206ENST00000475251 ROCK1Q13464 1354 aa19.42■□□□□ 0.7
SKA3-206ENST00000475251 DCCP43146 1447 aa19.41■□□□□ 0.7
SKA3-206ENST00000475251 NUTM2DQ5VT03 806 aaPredicted RBP19.4■□□□□ 0.7
SKA3-206ENST00000475251 AMOTL2Q9Y2J4 779 aa19.39■□□□□ 0.69
SKA3-206ENST00000475251 BRINP3Q76B58 766 aa19.36■□□□□ 0.69
SKA3-206ENST00000475251 NUP155O75694 1391 aa19.35■□□□□ 0.69
SKA3-206ENST00000475251 RXRBP28702 533 aa19.35■□□□□ 0.69
SKA3-206ENST00000475251 TRIM52Q96A61 297 aa19.35■□□□□ 0.69
SKA3-206ENST00000475251 UPF1Q92900 1129 aaKnown RBP eCLIP19.34■□□□□ 0.69
SKA3-206ENST00000475251 CDK12Q9NYV4 1490 aaPredicted RBP19.34■□□□□ 0.69
SKA3-206ENST00000475251 SETBP1Q9Y6X0 1596 aa19.33■□□□□ 0.69
SKA3-206ENST00000475251 ASXL1Q8IXJ9 1541 aa19.33■□□□□ 0.68
SKA3-206ENST00000475251 PTPRUQ92729 1446 aa19.33■□□□□ 0.68
SKA3-206ENST00000475251 XRN1Q8IZH2 1706 aaKnown RBP19.32■□□□□ 0.68
SKA3-206ENST00000475251 SETD5Q9C0A6 1442 aa19.32■□□□□ 0.68
SKA3-206ENST00000475251 NUTM2BA6NNL0 878 aaPredicted RBP19.31■□□□□ 0.68
SKA3-206ENST00000475251 NUTM2EB1AL46 878 aaPredicted RBP19.31■□□□□ 0.68
SKA3-206ENST00000475251 NUTM2AQ8IVF1 878 aaPredicted RBP19.31■□□□□ 0.68
SKA3-206ENST00000475251 LRRC59Q96AG4 307 aaKnown RBP19.3■□□□□ 0.68
SKA3-206ENST00000475251 NHSL1Q5SYE7 1610 aa19.29■□□□□ 0.68
SKA3-206ENST00000475251 MST1RQ04912 1400 aa19.29■□□□□ 0.68
SKA3-206ENST00000475251 ZNF326Q5BKZ1 582 aaKnown RBP19.29■□□□□ 0.68
SKA3-206ENST00000475251 NRXN3Q9Y4C0 1643 aa19.29■□□□□ 0.68
SKA3-206ENST00000475251 SPHKAPQ2M3C7 1700 aa19.28■□□□□ 0.68
SKA3-206ENST00000475251 POTEDQ86YR6 584 aa19.28■□□□□ 0.68
SKA3-206ENST00000475251 AFF2P51816 1311 aa19.27■□□□□ 0.68
SKA3-206ENST00000475251 ADGRL3Q9HAR2 1447 aa19.25■□□□□ 0.67
SKA3-206ENST00000475251 METP08581 1390 aa19.23■□□□□ 0.67
SKA3-206ENST00000475251 ITGAEP38570 1179 aa19.23■□□□□ 0.67
SKA3-206ENST00000475251 C8orf37Q96NL8 207 aa19.22■□□□□ 0.67
SKA3-206ENST00000475251 PNPLA6Q8IY17 1366 aa19.21■□□□□ 0.67
SKA3-206ENST00000475251 RBM6P78332 1123 aaKnown RBP19.21■□□□□ 0.67
SKA3-206ENST00000475251 NALCNQ8IZF0 1738 aa19.2■□□□□ 0.66
SKA3-206ENST00000475251 QTRT2Q9H974 415 aaKnown RBP19.19■□□□□ 0.66
SKA3-206ENST00000475251 NEXMIFQ5QGS0 1516 aa19.19■□□□□ 0.66
SKA3-206ENST00000475251 NGLY1Q96IV0 654 aa19.18■□□□□ 0.66
SKA3-206ENST00000475251 RGS12O14924 1447 aa19.17■□□□□ 0.66
SKA3-206ENST00000475251 C1orf167Q5SNV9 1468 aa19.16■□□□□ 0.66
SKA3-206ENST00000475251 KIF1BO60333 1816 aa19.16■□□□□ 0.66
SKA3-206ENST00000475251 CLTCL1P53675 1640 aa19.16■□□□□ 0.66
SKA3-206ENST00000475251 PTCH1Q13635 1447 aa19.16■□□□□ 0.66
SKA3-206ENST00000475251 LAMC1P11047 1609 aa19.15■□□□□ 0.66
SKA3-206ENST00000475251 VGFO15240 615 aaPredicted RBP19.14■□□□□ 0.65
SKA3-206ENST00000475251 DDX17Q92841 729 aaKnown RBP19.14■□□□□ 0.65
SKA3-206ENST00000475251 ADAMTS2O95450 1211 aa19.12■□□□□ 0.65
SKA3-206ENST00000475251 ATAD2Q6PL18 1390 aa19.11■□□□□ 0.65
SKA3-206ENST00000475251 SOS2Q07890 1332 aaPredicted RBP19.11■□□□□ 0.65
SKA3-206ENST00000475251 PRAG1Q86YV5 1406 aa19.1■□□□□ 0.65
SKA3-206ENST00000475251 TRPC5Q9UL62 973 aaPredicted RBP19.1■□□□□ 0.65
SKA3-206ENST00000475251 HFM1A2PYH4 1435 aa19.09■□□□□ 0.65
SKA3-206ENST00000475251 RPGRIP1LQ68CZ1 1315 aa19.09■□□□□ 0.65
SKA3-206ENST00000475251 USP21Q9UK80 565 aa19.09■□□□□ 0.65
SKA3-206ENST00000475251 ROBO2Q9HCK4 1378 aa19.07■□□□□ 0.64
SKA3-206ENST00000475251 ORAI2Q96SN7 254 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms