RNA–Protein interactions for RNA: ENST00000474157.1

GPNMB-209, Transcript of glycoprotein nmb, humanhuman

TSL 4

Gene GPNMB, Length 513 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-209ENST00000474157 GPCPD1Q9NPB8 672 aa10.74□□□□□ -0.69
GPNMB-209ENST00000474157 TIMELESSQ9UNS1 1208 aa10.74□□□□□ -0.69
GPNMB-209ENST00000474157 PLEKHG3A1L390 1219 aa10.73□□□□□ -0.69
GPNMB-209ENST00000474157 MS4A1P11836 297 aa10.73□□□□□ -0.69
GPNMB-209ENST00000474157 TMUB1Q9BVT8 246 aa10.73□□□□□ -0.69
GPNMB-209ENST00000474157 FAM198AQ9UFP1 575 aa10.73□□□□□ -0.69
GPNMB-209ENST00000474157 ERICH6BQ5W0A0 696 aa10.72□□□□□ -0.69
GPNMB-209ENST00000474157 KCNK17Q96T54 332 aa10.72□□□□□ -0.69
GPNMB-209ENST00000474157 TSKSQ9UJT2 592 aa10.71□□□□□ -0.69
GPNMB-209ENST00000474157 RBM46Q8TBY0 533 aaKnown RBP10.7□□□□□ -0.7
GPNMB-209ENST00000474157 RSF1Q96T23 1441 aaPredicted RBP10.69□□□□□ -0.7
GPNMB-209ENST00000474157 NEUROD1Q13562 356 aa10.69□□□□□ -0.7
GPNMB-209ENST00000474157 PCGF6Q9BYE7 350 aa10.69□□□□□ -0.7
GPNMB-209ENST00000474157 URB2Q14146 1524 aaKnown RBP10.68□□□□□ -0.7
GPNMB-209ENST00000474157 ERBB3P21860 1342 aa10.68□□□□□ -0.7
GPNMB-209ENST00000474157 RANGAP1P46060 587 aaPredicted RBP10.68□□□□□ -0.7
GPNMB-209ENST00000474157 KCNH8Q96L42 1107 aa10.68□□□□□ -0.7
GPNMB-209ENST00000474157 TRIM6-TRIM34B2RNG4 842 aa10.67□□□□□ -0.7
GPNMB-209ENST00000474157 SSTR3P32745 418 aaPredicted RBP10.67□□□□□ -0.7
GPNMB-209ENST00000474157 VARS2Q5ST30 1063 aaKnown RBP10.67□□□□□ -0.7
GPNMB-209ENST00000474157 MROH2BQ7Z745 1585 aa10.67□□□□□ -0.7
GPNMB-209ENST00000474157 ZNF608Q9ULD9 1512 aaPredicted RBP10.67□□□□□ -0.7
GPNMB-209ENST00000474157 NBPF26B4DH59 902 aa10.66□□□□□ -0.7
GPNMB-209ENST00000474157 C3orf80F5H4A9 247 aa10.66□□□□□ -0.7
GPNMB-209ENST00000474157 ST18O60284 1047 aa10.66□□□□□ -0.7
GPNMB-209ENST00000474157 PROX2Q3B8N5 592 aa10.66□□□□□ -0.7
GPNMB-209ENST00000474157 FAM217BQ9NTX9 383 aaPredicted RBP10.66□□□□□ -0.7
GPNMB-209ENST00000474157 IFT140Q96RY7 1462 aa10.66□□□□□ -0.7
GPNMB-209ENST00000474157 NUDT18Q6ZVK8 323 aa10.65□□□□□ -0.7
GPNMB-209ENST00000474157 EYA1Q99502 592 aa10.65□□□□□ -0.7
GPNMB-209ENST00000474157 CFTRP13569 1480 aa10.65□□□□□ -0.7
GPNMB-209ENST00000474157 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.64□□□□□ -0.71
GPNMB-209ENST00000474157 RCCD1A6NED2 376 aa10.64□□□□□ -0.71
GPNMB-209ENST00000474157 PACS2Q86VP3 889 aa10.64□□□□□ -0.71
GPNMB-209ENST00000474157 PNMA3Q9UL41 463 aa10.64□□□□□ -0.71
GPNMB-209ENST00000474157 PSEN2P49810 448 aa10.63□□□□□ -0.71
GPNMB-209ENST00000474157 EMP3P54852 163 aa10.63□□□□□ -0.71
GPNMB-209ENST00000474157 C14orf37Q86TY3 774 aa10.63□□□□□ -0.71
GPNMB-209ENST00000474157 TATDN2Q93075 761 aa10.63□□□□□ -0.71
GPNMB-209ENST00000474157 MARVELD3Q96A59 401 aa10.63□□□□□ -0.71
GPNMB-209ENST00000474157 ARXQ96QS3 562 aa10.62□□□□□ -0.71
GPNMB-209ENST00000474157 BEGAINQ9BUH8 593 aa10.62□□□□□ -0.71
GPNMB-209ENST00000474157 SMAPO00193 183 aa10.61□□□□□ -0.71
GPNMB-209ENST00000474157 POTEEQ6S8J3 1075 aa10.61□□□□□ -0.71
GPNMB-209ENST00000474157 ZBED2Q9BTP6 218 aa10.61□□□□□ -0.71
GPNMB-209ENST00000474157 ARHGAP33O14559 1287 aa10.6□□□□□ -0.71
GPNMB-209ENST00000474157 ONECUT3O60422 494 aaPredicted RBP10.6□□□□□ -0.71
GPNMB-209ENST00000474157 DNAJB2P25686 324 aa10.6□□□□□ -0.71
GPNMB-209ENST00000474157 GOPCQ9HD26 462 aa10.59□□□□□ -0.71
GPNMB-209ENST00000474157 AXIN2Q9Y2T1 843 aa10.59□□□□□ -0.71
GPNMB-209ENST00000474157 FAM205CA6NFA0 338 aa10.58□□□□□ -0.72
GPNMB-209ENST00000474157 KIAA1468Q9P260 1216 aa10.58□□□□□ -0.72
GPNMB-209ENST00000474157 SH3D19Q5HYK7 790 aa10.57□□□□□ -0.72
GPNMB-209ENST00000474157 DMRTA1Q5VZB9 504 aa10.57□□□□□ -0.72
GPNMB-209ENST00000474157 FAM163AQ96GL9 167 aaPredicted RBP10.57□□□□□ -0.72
GPNMB-209ENST00000474157 PCMTD1Q96MG8 357 aaPredicted RBP10.57□□□□□ -0.72
GPNMB-209ENST00000474157 TMEM134Q9H6X4 195 aa10.57□□□□□ -0.72
GPNMB-209ENST00000474157 PBX2P40425 430 aa10.55□□□□□ -0.72
GPNMB-209ENST00000474157 RSPH6AQ9H0K4 717 aa10.55□□□□□ -0.72
GPNMB-209ENST00000474157 DDX11L8A8MPP1 907 aa10.54□□□□□ -0.72
GPNMB-209ENST00000474157 ZNF687Q8N1G0 1237 aa10.54□□□□□ -0.72
GPNMB-209ENST00000474157 RABGEF1Q9UJ41 708 aa10.54□□□□□ -0.72
GPNMB-209ENST00000474157 AQRO60306 1485 aaKnown RBP eCLIP10.54□□□□□ -0.72
GPNMB-209ENST00000474157 SULF1Q8IWU6 871 aa10.53□□□□□ -0.72
GPNMB-209ENST00000474157 SLC4A5Q9BY07 1137 aa10.53□□□□□ -0.72
GPNMB-209ENST00000474157 PODXL2Q9NZ53 605 aa10.53□□□□□ -0.72
GPNMB-209ENST00000474157 SEPT9Q9UHD8 586 aaPredicted RBP10.53□□□□□ -0.72
GPNMB-209ENST00000474157 CD46P15529 392 aa10.52□□□□□ -0.73
GPNMB-209ENST00000474157 TRIM26Q12899 539 aaPredicted RBP10.52□□□□□ -0.73
GPNMB-209ENST00000474157 SKIV2LQ15477 1246 aaKnown RBP10.52□□□□□ -0.73
GPNMB-209ENST00000474157 HS3ST6Q96QI5 342 aa10.52□□□□□ -0.73
GPNMB-209ENST00000474157 MYSM1Q5VVJ2 828 aa10.51□□□□□ -0.73
GPNMB-209ENST00000474157 CHMP7Q8WUX9 453 aaPredicted RBP10.51□□□□□ -0.73
GPNMB-209ENST00000474157 TBC1D2Q9BYX2 928 aa10.51□□□□□ -0.73
GPNMB-209ENST00000474157 VPS9D1Q9Y2B5 631 aa10.51□□□□□ -0.73
GPNMB-209ENST00000474157 POLR3EQ9NVU0 708 aa10.5□□□□□ -0.73
GPNMB-209ENST00000474157 ATP1B4Q9UN42 357 aaPredicted RBP10.5□□□□□ -0.73
GPNMB-209ENST00000474157 EIF4G3O43432 1585 aaKnown RBP10.49□□□□□ -0.73
GPNMB-209ENST00000474157 POTEB3A0JP26 581 aa10.49□□□□□ -0.73
GPNMB-209ENST00000474157 NEFLP07196 543 aa10.49□□□□□ -0.73
GPNMB-209ENST00000474157 POTEBQ6S5H4 581 aa10.49□□□□□ -0.73
GPNMB-209ENST00000474157 DIXDC1Q155Q3 683 aa10.48□□□□□ -0.73
GPNMB-209ENST00000474157 SWT1Q5T5J6 900 aaKnown RBP10.48□□□□□ -0.73
GPNMB-209ENST00000474157 RDH13Q8NBN7 331 aa10.48□□□□□ -0.73
GPNMB-209ENST00000474157 SPIRE2Q8WWL2 714 aa10.48□□□□□ -0.73
GPNMB-209ENST00000474157 PKNOX2Q96KN3 472 aa10.48□□□□□ -0.73
GPNMB-209ENST00000474157 TOPBP1Q92547 1522 aa10.48□□□□□ -0.73
GPNMB-209ENST00000474157 CLK2P49760 499 aaKnown RBP10.47□□□□□ -0.73
GPNMB-209ENST00000474157 LCE2DQ5TA82 110 aaPredicted RBP10.47□□□□□ -0.73
GPNMB-209ENST00000474157 PROCA1Q8NCQ7 364 aaPredicted RBP10.47□□□□□ -0.73
GPNMB-209ENST00000474157 FAM98CQ17RN3 349 aaKnown RBP10.46□□□□□ -0.73
GPNMB-209ENST00000474157 NUTM1Q86Y26 1132 aa10.46□□□□□ -0.73
GPNMB-209ENST00000474157 ABCC8Q09428 1581 aa10.46□□□□□ -0.74
GPNMB-209ENST00000474157 CHD1O14646 1710 aa10.45□□□□□ -0.74
GPNMB-209ENST00000474157 GAPVD1Q14C86 1478 aa10.45□□□□□ -0.74
GPNMB-209ENST00000474157 NBPF3Q9H094 633 aa10.45□□□□□ -0.74
GPNMB-209ENST00000474157 TK2O00142 265 aa10.43□□□□□ -0.74
GPNMB-209ENST00000474157 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.43□□□□□ -0.74
GPNMB-209ENST00000474157 LIMD1Q9UGP4 676 aa10.43□□□□□ -0.74
GPNMB-209ENST00000474157 WIZO95785 1651 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms