RNA–Protein interactions for RNA: ENST00000473417.5

SNX4-204, Transcript of sorting nexin 4, humanhuman

TSL 3

Gene SNX4, Length 754 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX4-204ENST00000473417 PIP4K2BP78356 416 aa27.34■■□□□ 1.97
SNX4-204ENST00000473417 CHD2O14647 1828 aaKnown RBP27.34■■□□□ 1.97
SNX4-204ENST00000473417 RIMS2Q9UQ26 1411 aa27.33■■□□□ 1.96
SNX4-204ENST00000473417 ILDR2Q71H61 639 aa27.32■■□□□ 1.96
SNX4-204ENST00000473417 NAIPQ13075 1403 aa27.31■■□□□ 1.96
SNX4-204ENST00000473417 PLEKHG1Q9ULL1 1385 aa27.3■■□□□ 1.96
SNX4-204ENST00000473417 NKTRP30414 1462 aaKnown RBP27.29■■□□□ 1.96
SNX4-204ENST00000473417 HSPA1LP34931 641 aa27.27■■□□□ 1.96
SNX4-204ENST00000473417 SLC26A8Q96RN1 970 aa27.27■■□□□ 1.96
SNX4-204ENST00000473417 DIP2AQ14689 1571 aa27.26■■□□□ 1.95
SNX4-204ENST00000473417 KCNA6P17658 529 aa27.24■■□□□ 1.95
SNX4-204ENST00000473417 HFM1A2PYH4 1435 aa27.23■■□□□ 1.95
SNX4-204ENST00000473417 CLTCL1P53675 1640 aa27.23■■□□□ 1.95
SNX4-204ENST00000473417 TMEM94Q12767 1356 aa27.22■■□□□ 1.95
SNX4-204ENST00000473417 TRPM2O94759 1503 aa27.21■■□□□ 1.95
SNX4-204ENST00000473417 KIF1BO60333 1816 aa27.21■■□□□ 1.95
SNX4-204ENST00000473417 CHGAP10645 457 aaKnown RBP27.21■■□□□ 1.95
SNX4-204ENST00000473417 HDGFP51858 240 aaKnown RBP27.21■■□□□ 1.95
SNX4-204ENST00000473417 PPP1R15AO75807 674 aaPredicted RBP27.2■■□□□ 1.94
SNX4-204ENST00000473417 MED1Q15648 1581 aaPredicted RBP27.2■■□□□ 1.94
SNX4-204ENST00000473417 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.19■■□□□ 1.94
SNX4-204ENST00000473417 ADAMTS13Q76LX8 1427 aa27.18■■□□□ 1.94
SNX4-204ENST00000473417 SOCS7O14512 581 aa27.18■■□□□ 1.94
SNX4-204ENST00000473417 BCANQ96GW7 911 aa27.18■■□□□ 1.94
SNX4-204ENST00000473417 NRXN3Q9Y4C0 1643 aa27.17■■□□□ 1.94
SNX4-204ENST00000473417 SENP3Q9H4L4 574 aaPredicted RBP27.14■■□□□ 1.94
SNX4-204ENST00000473417 ROBO1Q9Y6N7 1651 aa27.14■■□□□ 1.93
SNX4-204ENST00000473417 PROSER2Q86WR7 435 aaPredicted RBP27.13■■□□□ 1.93
SNX4-204ENST00000473417 SETBP1Q9Y6X0 1596 aa27.13■■□□□ 1.93
SNX4-204ENST00000473417 TBX22Q9Y458 520 aa27.12■■□□□ 1.93
SNX4-204ENST00000473417 NUTM2DQ5VT03 806 aaPredicted RBP27.11■■□□□ 1.93
SNX4-204ENST00000473417 NEXMIFQ5QGS0 1516 aa27.11■■□□□ 1.93
SNX4-204ENST00000473417 PIK3R4Q99570 1358 aa27.1■■□□□ 1.93
SNX4-204ENST00000473417 FAM135BQ49AJ0 1406 aa27.08■■□□□ 1.93
SNX4-204ENST00000473417 XRN1Q8IZH2 1706 aaKnown RBP27.08■■□□□ 1.93
SNX4-204ENST00000473417 RBM33Q96EV2 1170 aaKnown RBP27.08■■□□□ 1.93
SNX4-204ENST00000473417 MSH6P52701 1360 aa27.06■■□□□ 1.92
SNX4-204ENST00000473417 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.04■■□□□ 1.92
SNX4-204ENST00000473417 NCOA3Q9Y6Q9 1424 aa27.04■■□□□ 1.92
SNX4-204ENST00000473417 PTPRUQ92729 1446 aa27.01■■□□□ 1.91
SNX4-204ENST00000473417 TRIM52Q96A61 297 aa27.01■■□□□ 1.91
SNX4-204ENST00000473417 PPLO60437 1756 aa27.01■■□□□ 1.91
SNX4-204ENST00000473417 SETD1AO15047 1707 aaKnown RBP27.01■■□□□ 1.91
SNX4-204ENST00000473417 ZNF326Q5BKZ1 582 aaKnown RBP27■■□□□ 1.91
SNX4-204ENST00000473417 PHLPP1O60346 1717 aa26.98■■□□□ 1.91
SNX4-204ENST00000473417 SLC4A1APQ9BWU0 796 aaKnown RBP26.97■■□□□ 1.91
SNX4-204ENST00000473417 PHF23Q9BUL5 403 aaPredicted RBP26.93■■□□□ 1.9
SNX4-204ENST00000473417 AMOTL2Q9Y2J4 779 aa26.92■■□□□ 1.9
SNX4-204ENST00000473417 IFT172Q9UG01 1749 aa26.92■■□□□ 1.9
SNX4-204ENST00000473417 SLAIN2Q9P270 581 aa26.91■■□□□ 1.9
SNX4-204ENST00000473417 METP08581 1390 aa26.91■■□□□ 1.9
SNX4-204ENST00000473417 NALCNQ8IZF0 1738 aa26.9■■□□□ 1.9
SNX4-204ENST00000473417 COL16A1Q07092 1604 aaPredicted RBP26.9■■□□□ 1.9
SNX4-204ENST00000473417 DCCP43146 1447 aa26.88■■□□□ 1.89
SNX4-204ENST00000473417 C14orf37Q86TY3 774 aa26.87■■□□□ 1.89
SNX4-204ENST00000473417 SETD5Q9C0A6 1442 aa26.86■■□□□ 1.89
SNX4-204ENST00000473417 C19orf44Q9H6X5 657 aa26.86■■□□□ 1.89
SNX4-204ENST00000473417 AHDC1Q5TGY3 1603 aaPredicted RBP26.86■■□□□ 1.89
SNX4-204ENST00000473417 CADPS2Q86UW7 1296 aa26.84■■□□□ 1.89
SNX4-204ENST00000473417 FOXD1Q16676 465 aa26.83■■□□□ 1.89
SNX4-204ENST00000473417 RPGRIP1LQ68CZ1 1315 aa26.83■■□□□ 1.89
SNX4-204ENST00000473417 CCDC144AA2RUR9 1427 aa26.82■■□□□ 1.88
SNX4-204ENST00000473417 VGFO15240 615 aaPredicted RBP26.81■■□□□ 1.88
SNX4-204ENST00000473417 ATF3P18847 181 aa26.8■■□□□ 1.88
SNX4-204ENST00000473417 MPHOSPH9Q99550 1183 aa26.8■■□□□ 1.88
SNX4-204ENST00000473417 PRAG1Q86YV5 1406 aa26.8■■□□□ 1.88
SNX4-204ENST00000473417 SHPRHQ149N8 1683 aa26.79■■□□□ 1.88
SNX4-204ENST00000473417 PTCH1Q13635 1447 aa26.79■■□□□ 1.88
SNX4-204ENST00000473417 SPATA31E1Q6ZUB1 1445 aa26.79■■□□□ 1.88
SNX4-204ENST00000473417 ADGRL3Q9HAR2 1447 aa26.79■■□□□ 1.88
SNX4-204ENST00000473417 NHSL1Q5SYE7 1610 aa26.79■■□□□ 1.88
SNX4-204ENST00000473417 RAB3GAP2Q9H2M9 1393 aa26.78■■□□□ 1.88
SNX4-204ENST00000473417 MST1RQ04912 1400 aa26.76■■□□□ 1.87
SNX4-204ENST00000473417 ACIN1Q9UKV3 1341 aaKnown RBP26.76■■□□□ 1.87
SNX4-204ENST00000473417 ASXL1Q8IXJ9 1541 aa26.75■■□□□ 1.87
SNX4-204ENST00000473417 JCADQ9P266 1359 aa26.74■■□□□ 1.87
SNX4-204ENST00000473417 KNDC1Q76NI1 1749 aa26.71■■□□□ 1.87
SNX4-204ENST00000473417 RGS17Q9UGC6 210 aaPredicted RBP26.71■■□□□ 1.87
SNX4-204ENST00000473417 BRINP3Q76B58 766 aa26.7■■□□□ 1.86
SNX4-204ENST00000473417 ROBO2Q9HCK4 1378 aa26.69■■□□□ 1.86
SNX4-204ENST00000473417 ANKRD30BQ9BXX2 1392 aa26.68■■□□□ 1.86
SNX4-204ENST00000473417 LAMC1P11047 1609 aa26.67■■□□□ 1.86
SNX4-204ENST00000473417 ADGRF5Q8IZF2 1346 aa26.66■■□□□ 1.86
SNX4-204ENST00000473417 LRP6O75581 1613 aa26.65■■□□□ 1.86
SNX4-204ENST00000473417 PIK3C2GO75747 1445 aa26.65■■□□□ 1.86
SNX4-204ENST00000473417 TRIM26Q12899 539 aaPredicted RBP26.64■■□□□ 1.86
SNX4-204ENST00000473417 RGL3Q3MIN7 710 aa26.64■■□□□ 1.86
SNX4-204ENST00000473417 HRCP23327 699 aa26.63■■□□□ 1.85
SNX4-204ENST00000473417 CDC42BPGQ6DT37 1551 aa26.63■■□□□ 1.85
SNX4-204ENST00000473417 SPATA31A6Q5VVP1 1343 aa26.61■■□□□ 1.85
SNX4-204ENST00000473417 C1orf167Q5SNV9 1468 aa26.61■■□□□ 1.85
SNX4-204ENST00000473417 TECPR2O15040 1411 aa26.6■■□□□ 1.85
SNX4-204ENST00000473417 MYOM2P54296 1465 aa26.6■■□□□ 1.85
SNX4-204ENST00000473417 NRXN1Q9ULB1 1477 aa26.59■■□□□ 1.85
SNX4-204ENST00000473417 POTEAQ6S8J7 498 aa26.55■■□□□ 1.84
SNX4-204ENST00000473417 LRPPRCP42704 1394 aaKnown RBP26.55■■□□□ 1.84
SNX4-204ENST00000473417 FMN2Q9NZ56 1722 aa26.52■■□□□ 1.84
SNX4-204ENST00000473417 ABCC11Q96J66 1382 aa26.51■■□□□ 1.83
SNX4-204ENST00000473417 YTHDC2Q9H6S0 1430 aaKnown RBP26.5■■□□□ 1.83
SNX4-204ENST00000473417 DDX17Q92841 729 aaKnown RBP26.49■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms