RNA–Protein interactions for RNA: ENST00000472679.1

CLK1-209, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 461 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-209ENST00000472679 SWT1Q5T5J6 900 aaKnown RBP12.55□□□□□ -0.4
CLK1-209ENST00000472679 ZFRQ96KR1 1074 aaKnown RBP12.55□□□□□ -0.4
CLK1-209ENST00000472679 DAXXQ9UER7 740 aaPredicted RBP12.55□□□□□ -0.4
CLK1-209ENST00000472679 FAM217BQ9NTX9 383 aaPredicted RBP12.54□□□□□ -0.4
CLK1-209ENST00000472679 SSTR3P32745 418 aaPredicted RBP12.53□□□□□ -0.4
CLK1-209ENST00000472679 SAMD7Q7Z3H4 446 aa12.53□□□□□ -0.4
CLK1-209ENST00000472679 FAM117AQ9C073 453 aa12.53□□□□□ -0.4
CLK1-209ENST00000472679 STAC3Q96MF2 364 aa12.51□□□□□ -0.41
CLK1-209ENST00000472679 DDX11L8A8MPP1 907 aa12.49□□□□□ -0.41
CLK1-209ENST00000472679 IL27Q8NEV9 243 aa12.49□□□□□ -0.41
CLK1-209ENST00000472679 PLEKHG3A1L390 1219 aa12.47□□□□□ -0.41
CLK1-209ENST00000472679 GOLGA8CPA6NN73 597 aa12.46□□□□□ -0.41
CLK1-209ENST00000472679 SLC10A3P09131 477 aa12.46□□□□□ -0.41
CLK1-209ENST00000472679 HDGFP51858 240 aaKnown RBP12.46□□□□□ -0.41
CLK1-209ENST00000472679 CD46P15529 392 aa12.45□□□□□ -0.42
CLK1-209ENST00000472679 BEGAINQ9BUH8 593 aa12.45□□□□□ -0.42
CLK1-209ENST00000472679 SULF1Q8IWU6 871 aa12.44□□□□□ -0.42
CLK1-209ENST00000472679 RNF40O75150 1001 aa12.43□□□□□ -0.42
CLK1-209ENST00000472679 BCAMP50895 628 aa12.43□□□□□ -0.42
CLK1-209ENST00000472679 RDH13Q8NBN7 331 aa12.43□□□□□ -0.42
CLK1-209ENST00000472679 ANKK1Q8NFD2 765 aa12.43□□□□□ -0.42
CLK1-209ENST00000472679 WNT2BQ93097 391 aa12.43□□□□□ -0.42
CLK1-209ENST00000472679 LRCH3Q96II8 777 aa12.43□□□□□ -0.42
CLK1-209ENST00000472679 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.43□□□□□ -0.42
CLK1-209ENST00000472679 SLF2Q8IX21 1173 aa12.42□□□□□ -0.42
CLK1-209ENST00000472679 DDRGK1Q96HY6 314 aa12.42□□□□□ -0.42
CLK1-209ENST00000472679 SOWAHBA6NEL2 793 aa12.41□□□□□ -0.42
CLK1-209ENST00000472679 PCDH10Q9P2E7 1040 aa12.41□□□□□ -0.42
CLK1-209ENST00000472679 TMEM132AQ24JP5 1023 aa12.39□□□□□ -0.43
CLK1-209ENST00000472679 KCTD12Q96CX2 325 aaKnown RBP12.39□□□□□ -0.43
CLK1-209ENST00000472679 GCGRP47871 477 aa12.37□□□□□ -0.43
CLK1-209ENST00000472679 HPS5Q9UPZ3 1129 aa12.37□□□□□ -0.43
CLK1-209ENST00000472679 SLC4A3P48751 1232 aa12.36□□□□□ -0.43
CLK1-209ENST00000472679 RSPH4AQ5TD94 716 aa12.36□□□□□ -0.43
CLK1-209ENST00000472679 CFHP08603 1231 aa12.35□□□□□ -0.43
CLK1-209ENST00000472679 THSD4Q6ZMP0 1018 aa12.35□□□□□ -0.43
CLK1-209ENST00000472679 SPNS2Q8IVW8 549 aa12.35□□□□□ -0.43
CLK1-209ENST00000472679 SPIRE2Q8WWL2 714 aa12.35□□□□□ -0.43
CLK1-209ENST00000472679 TBC1D2Q9BYX2 928 aa12.34□□□□□ -0.43
CLK1-209ENST00000472679 MYT1LQ9UL68 1186 aa12.34□□□□□ -0.43
CLK1-209ENST00000472679 PPP4CP60510 307 aa12.33□□□□□ -0.44
CLK1-209ENST00000472679 WBP1LQ9NX94 342 aa12.33□□□□□ -0.44
CLK1-209ENST00000472679 TSR3Q9UJK0 312 aaKnown RBP12.33□□□□□ -0.44
CLK1-209ENST00000472679 KDM4AO75164 1064 aa12.31□□□□□ -0.44
CLK1-209ENST00000472679 NUTM1Q86Y26 1132 aa12.31□□□□□ -0.44
CLK1-209ENST00000472679 MYSM1Q5VVJ2 828 aa12.3□□□□□ -0.44
CLK1-209ENST00000472679 APLP1P51693 650 aa12.29□□□□□ -0.44
CLK1-209ENST00000472679 SH3D19Q5HYK7 790 aa12.28□□□□□ -0.44
CLK1-209ENST00000472679 POLR3EQ9NVU0 708 aa12.28□□□□□ -0.44
CLK1-209ENST00000472679 MOXD2PA6NHM9 499 aa12.27□□□□□ -0.45
CLK1-209ENST00000472679 NDUFV2P19404 249 aa12.27□□□□□ -0.45
CLK1-209ENST00000472679 PTPN5P54829 565 aa12.27□□□□□ -0.45
CLK1-209ENST00000472679 FUT2Q10981 343 aa12.27□□□□□ -0.45
CLK1-209ENST00000472679 HLA-CQ95604 372 aa12.27□□□□□ -0.45
CLK1-209ENST00000472679 RSPH6AQ9H0K4 717 aa12.27□□□□□ -0.45
CLK1-209ENST00000472679 KMT5BQ4FZB7 885 aa12.26□□□□□ -0.45
CLK1-209ENST00000472679 NECTIN2Q92692 538 aa12.26□□□□□ -0.45
CLK1-209ENST00000472679 HOXA2O43364 376 aa12.25□□□□□ -0.45
CLK1-209ENST00000472679 ACTN4O43707 911 aaKnown RBP12.25□□□□□ -0.45
CLK1-209ENST00000472679 SKIV2LQ15477 1246 aaKnown RBP12.25□□□□□ -0.45
CLK1-209ENST00000472679 DIXDC1Q155Q3 683 aa12.25□□□□□ -0.45
CLK1-209ENST00000472679 PROCA1Q8NCQ7 364 aaPredicted RBP12.25□□□□□ -0.45
CLK1-209ENST00000472679 GOPCQ9HD26 462 aa12.25□□□□□ -0.45
CLK1-209ENST00000472679 USP46P62068 366 aa12.24□□□□□ -0.45
CLK1-209ENST00000472679 GUCA2AQ02747 115 aa12.24□□□□□ -0.45
CLK1-209ENST00000472679 LIMD1Q9UGP4 676 aa12.24□□□□□ -0.45
CLK1-209ENST00000472679 PUS10Q3MIT2 529 aaKnown RBP12.23□□□□□ -0.45
CLK1-209ENST00000472679 RIC3Q7Z5B4 369 aa12.23□□□□□ -0.45
CLK1-209ENST00000472679 RNF166Q96A37 237 aaPredicted RBP12.23□□□□□ -0.45
CLK1-209ENST00000472679 RSBN1LQ6PCB5 846 aaPredicted RBP12.22□□□□□ -0.45
CLK1-209ENST00000472679 SPTLC1O15269 473 aa12.21□□□□□ -0.45
CLK1-209ENST00000472679 ATP6V1AP38606 617 aa12.21□□□□□ -0.45
CLK1-209ENST00000472679 CLK2P49760 499 aaKnown RBP12.21□□□□□ -0.45
CLK1-209ENST00000472679 PCMTD1Q96MG8 357 aaPredicted RBP12.2□□□□□ -0.46
CLK1-209ENST00000472679 PCDHB15Q9Y5E8 787 aa12.2□□□□□ -0.46
CLK1-209ENST00000472679 MORN1Q5T089 497 aa12.19□□□□□ -0.46
CLK1-209ENST00000472679 PRR14Q9BWN1 585 aa12.19□□□□□ -0.46
CLK1-209ENST00000472679 PCDHGC3Q9UN70 934 aa12.19□□□□□ -0.46
CLK1-209ENST00000472679 FDX1P10109 184 aa12.18□□□□□ -0.46
CLK1-209ENST00000472679 MMRN1Q13201 1228 aa12.18□□□□□ -0.46
CLK1-209ENST00000472679 CSPP1Q1MSJ5 1256 aa12.18□□□□□ -0.46
CLK1-209ENST00000472679 FBXO31Q5XUX0 539 aaPredicted RBP12.18□□□□□ -0.46
CLK1-209ENST00000472679 PCDHB3Q9Y5E6 796 aa12.18□□□□□ -0.46
CLK1-209ENST00000472679 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.17□□□□□ -0.46
CLK1-209ENST00000472679 GJA5P36382 358 aa12.16□□□□□ -0.46
CLK1-209ENST00000472679 GRIPAP1Q4V328 841 aa12.16□□□□□ -0.46
CLK1-209ENST00000472679 BLOC1S3Q6QNY0 202 aa12.16□□□□□ -0.46
CLK1-209ENST00000472679 ATP1B4Q9UN42 357 aaPredicted RBP12.16□□□□□ -0.46
CLK1-209ENST00000472679 SLC27A5Q9Y2P5 690 aa12.16□□□□□ -0.46
CLK1-209ENST00000472679 NYAP1Q6ZVC0 841 aa12.15□□□□□ -0.46
CLK1-209ENST00000472679 QPCTQ16769 361 aa12.14□□□□□ -0.47
CLK1-209ENST00000472679 COPS2P61201 443 aa12.13□□□□□ -0.47
CLK1-209ENST00000472679 TUSC1Q2TAM9 212 aa12.13□□□□□ -0.47
CLK1-209ENST00000472679 CABLES1Q8TDN4 633 aa12.13□□□□□ -0.47
CLK1-209ENST00000472679 HCSTQ9UBK5 93 aa12.13□□□□□ -0.47
CLK1-209ENST00000472679 SCUBE3Q8IX30 993 aa12.12□□□□□ -0.47
CLK1-209ENST00000472679 SYMPKQ92797 1274 aaKnown RBP12.12□□□□□ -0.47
CLK1-209ENST00000472679 MTRQ99707 1265 aa12.11□□□□□ -0.47
CLK1-209ENST00000472679 LILRB3O75022 631 aa12.1□□□□□ -0.47
CLK1-209ENST00000472679 HRCP23327 699 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms