RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 KCNA6P17658 529 aa17.96■□□□□ 0.47
SYNE1-221ENST00000472563 LRRC7Q96NW7 1537 aa17.96■□□□□ 0.47
SYNE1-221ENST00000472563 BCANQ96GW7 911 aa17.95■□□□□ 0.46
SYNE1-221ENST00000472563 TMEM131LA2VDJ0 1609 aa17.94■□□□□ 0.46
SYNE1-221ENST00000472563 SLC4A1APQ9BWU0 796 aaKnown RBP17.93■□□□□ 0.46
SYNE1-221ENST00000472563 TBX22Q9Y458 520 aa17.92■□□□□ 0.46
SYNE1-221ENST00000472563 PIP4K2BP78356 416 aa17.9■□□□□ 0.46
SYNE1-221ENST00000472563 NUTM2DQ5VT03 806 aaPredicted RBP17.9■□□□□ 0.46
SYNE1-221ENST00000472563 ACIN1Q9UKV3 1341 aaKnown RBP17.89■□□□□ 0.45
SYNE1-221ENST00000472563 SENP3Q9H4L4 574 aaPredicted RBP17.88■□□□□ 0.45
SYNE1-221ENST00000472563 SCAF1Q9H7N4 1312 aaKnown RBP17.88■□□□□ 0.45
SYNE1-221ENST00000472563 ZNF326Q5BKZ1 582 aaKnown RBP17.87■□□□□ 0.45
SYNE1-221ENST00000472563 PROSER2Q86WR7 435 aaPredicted RBP17.87■□□□□ 0.45
SYNE1-221ENST00000472563 TMEM94Q12767 1356 aa17.87■□□□□ 0.45
SYNE1-221ENST00000472563 TRPM2O94759 1503 aa17.87■□□□□ 0.45
SYNE1-221ENST00000472563 ADAMTS13Q76LX8 1427 aa17.86■□□□□ 0.45
SYNE1-221ENST00000472563 STRCP1A6NGW2 1772 aa17.85■□□□□ 0.45
SYNE1-221ENST00000472563 PIK3R4Q99570 1358 aa17.84■□□□□ 0.45
SYNE1-221ENST00000472563 MPHOSPH9Q99550 1183 aa17.84■□□□□ 0.45
SYNE1-221ENST00000472563 NKTRP30414 1462 aaKnown RBP17.83■□□□□ 0.45
SYNE1-221ENST00000472563 SETD5Q9C0A6 1442 aa17.83■□□□□ 0.45
SYNE1-221ENST00000472563 HSPA1LP34931 641 aa17.83■□□□□ 0.44
SYNE1-221ENST00000472563 ALKQ9UM73 1620 aa17.82■□□□□ 0.44
SYNE1-221ENST00000472563 FOXD1Q16676 465 aa17.81■□□□□ 0.44
SYNE1-221ENST00000472563 RBM33Q96EV2 1170 aaKnown RBP17.81■□□□□ 0.44
SYNE1-221ENST00000472563 SPHKAPQ2M3C7 1700 aa17.81■□□□□ 0.44
SYNE1-221ENST00000472563 RPGRIP1LQ68CZ1 1315 aa17.8■□□□□ 0.44
SYNE1-221ENST00000472563 NWD1Q149M9 1564 aa17.8■□□□□ 0.44
SYNE1-221ENST00000472563 CLTCL1P53675 1640 aa17.8■□□□□ 0.44
SYNE1-221ENST00000472563 DIP2AQ14689 1571 aa17.79■□□□□ 0.44
SYNE1-221ENST00000472563 VGFO15240 615 aaPredicted RBP17.78■□□□□ 0.44
SYNE1-221ENST00000472563 NCOA3Q9Y6Q9 1424 aa17.78■□□□□ 0.44
SYNE1-221ENST00000472563 AMOTL2Q9Y2J4 779 aa17.77■□□□□ 0.44
SYNE1-221ENST00000472563 MYO5BQ9ULV0 1848 aa17.77■□□□□ 0.43
SYNE1-221ENST00000472563 MSH6P52701 1360 aa17.76■□□□□ 0.43
SYNE1-221ENST00000472563 CCDC144AA2RUR9 1427 aa17.75■□□□□ 0.43
SYNE1-221ENST00000472563 FAM135BQ49AJ0 1406 aa17.75■□□□□ 0.43
SYNE1-221ENST00000472563 RAB3GAP2Q9H2M9 1393 aa17.75■□□□□ 0.43
SYNE1-221ENST00000472563 SETBP1Q9Y6X0 1596 aa17.74■□□□□ 0.43
SYNE1-221ENST00000472563 PTPRUQ92729 1446 aa17.74■□□□□ 0.43
SYNE1-221ENST00000472563 NEXMIFQ5QGS0 1516 aa17.74■□□□□ 0.43
SYNE1-221ENST00000472563 METP08581 1390 aa17.74■□□□□ 0.43
SYNE1-221ENST00000472563 DISP3Q9P2K9 1392 aa17.74■□□□□ 0.43
SYNE1-221ENST00000472563 HRCP23327 699 aa17.73■□□□□ 0.43
SYNE1-221ENST00000472563 C19orf44Q9H6X5 657 aa17.72■□□□□ 0.43
SYNE1-221ENST00000472563 SLAIN2Q9P270 581 aa17.72■□□□□ 0.43
SYNE1-221ENST00000472563 C14orf37Q86TY3 774 aa17.71■□□□□ 0.43
SYNE1-221ENST00000472563 SPATA31E1Q6ZUB1 1445 aa17.7■□□□□ 0.42
SYNE1-221ENST00000472563 NRXN3Q9Y4C0 1643 aa17.69■□□□□ 0.42
SYNE1-221ENST00000472563 CHD2O14647 1828 aaKnown RBP17.68■□□□□ 0.42
SYNE1-221ENST00000472563 RGL3Q3MIN7 710 aa17.68■□□□□ 0.42
SYNE1-221ENST00000472563 CADPS2Q86UW7 1296 aa17.68■□□□□ 0.42
SYNE1-221ENST00000472563 XIRP1Q702N8 1843 aaKnown RBP17.68■□□□□ 0.42
SYNE1-221ENST00000472563 ATF3P18847 181 aa17.67■□□□□ 0.42
SYNE1-221ENST00000472563 ANKRD30BQ9BXX2 1392 aa17.66■□□□□ 0.42
SYNE1-221ENST00000472563 ADGRF5Q8IZF2 1346 aa17.65■□□□□ 0.42
SYNE1-221ENST00000472563 KIF1BO60333 1816 aa17.64■□□□□ 0.41
SYNE1-221ENST00000472563 DCCP43146 1447 aa17.62■□□□□ 0.41
SYNE1-221ENST00000472563 XRN1Q8IZH2 1706 aaKnown RBP17.61■□□□□ 0.41
SYNE1-221ENST00000472563 PRAG1Q86YV5 1406 aa17.61■□□□□ 0.41
SYNE1-221ENST00000472563 PTCH1Q13635 1447 aa17.6■□□□□ 0.41
SYNE1-221ENST00000472563 ROBO2Q9HCK4 1378 aa17.59■□□□□ 0.41
SYNE1-221ENST00000472563 ILDR2Q71H61 639 aa17.59■□□□□ 0.41
SYNE1-221ENST00000472563 ADGRL3Q9HAR2 1447 aa17.58■□□□□ 0.41
SYNE1-221ENST00000472563 PIK3C2GO75747 1445 aa17.56■□□□□ 0.4
SYNE1-221ENST00000472563 BRINP3Q76B58 766 aa17.56■□□□□ 0.4
SYNE1-221ENST00000472563 ROBO1Q9Y6N7 1651 aa17.55■□□□□ 0.4
SYNE1-221ENST00000472563 MED1Q15648 1581 aaPredicted RBP17.55■□□□□ 0.4
SYNE1-221ENST00000472563 LRPPRCP42704 1394 aaKnown RBP17.54■□□□□ 0.4
SYNE1-221ENST00000472563 PPLO60437 1756 aa17.54■□□□□ 0.4
SYNE1-221ENST00000472563 C14orf93Q9H972 538 aaKnown RBP17.54■□□□□ 0.4
SYNE1-221ENST00000472563 MST1RQ04912 1400 aa17.54■□□□□ 0.4
SYNE1-221ENST00000472563 ABCC11Q96J66 1382 aa17.53■□□□□ 0.4
SYNE1-221ENST00000472563 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.53■□□□□ 0.4
SYNE1-221ENST00000472563 MYOM2P54296 1465 aa17.52■□□□□ 0.4
SYNE1-221ENST00000472563 NRXN1Q9ULB1 1477 aa17.52■□□□□ 0.4
SYNE1-221ENST00000472563 TMEM132EQ6IEE7 984 aa17.52■□□□□ 0.4
SYNE1-221ENST00000472563 PHF23Q9BUL5 403 aaPredicted RBP17.52■□□□□ 0.4
SYNE1-221ENST00000472563 STK26Q9P289 416 aa17.52■□□□□ 0.4
SYNE1-221ENST00000472563 TECPR2O15040 1411 aa17.52■□□□□ 0.4
SYNE1-221ENST00000472563 JCADQ9P266 1359 aa17.52■□□□□ 0.39
SYNE1-221ENST00000472563 STAC3Q96MF2 364 aa17.51■□□□□ 0.39
SYNE1-221ENST00000472563 SETD1AO15047 1707 aaKnown RBP17.5■□□□□ 0.39
SYNE1-221ENST00000472563 CFAP70Q5T0N1 1121 aa17.5■□□□□ 0.39
SYNE1-221ENST00000472563 SIRT1Q96EB6 747 aa17.5■□□□□ 0.39
SYNE1-221ENST00000472563 WAPLQ7Z5K2 1190 aa17.48■□□□□ 0.39
SYNE1-221ENST00000472563 C1orf167Q5SNV9 1468 aa17.48■□□□□ 0.39
SYNE1-221ENST00000472563 YTHDC2Q9H6S0 1430 aaKnown RBP17.47■□□□□ 0.39
SYNE1-221ENST00000472563 DCAF11Q8TEB1 546 aa17.47■□□□□ 0.39
SYNE1-221ENST00000472563 DHX57Q6P158 1386 aaKnown RBP17.47■□□□□ 0.39
SYNE1-221ENST00000472563 AHDC1Q5TGY3 1603 aaPredicted RBP17.47■□□□□ 0.39
SYNE1-221ENST00000472563 SOCS7O14512 581 aa17.46■□□□□ 0.39
SYNE1-221ENST00000472563 KDM2AQ9Y2K7 1162 aa17.46■□□□□ 0.39
SYNE1-221ENST00000472563 ASXL1Q8IXJ9 1541 aa17.46■□□□□ 0.39
SYNE1-221ENST00000472563 IFT172Q9UG01 1749 aa17.45■□□□□ 0.38
SYNE1-221ENST00000472563 SPATA31A6Q5VVP1 1343 aa17.45■□□□□ 0.38
SYNE1-221ENST00000472563 ORAI2Q96SN7 254 aa17.44■□□□□ 0.38
SYNE1-221ENST00000472563 RGS17Q9UGC6 210 aaPredicted RBP17.44■□□□□ 0.38
SYNE1-221ENST00000472563 COL16A1Q07092 1604 aaPredicted RBP17.43■□□□□ 0.38
SYNE1-221ENST00000472563 PLEKHH1Q9ULM0 1364 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms