RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 ZFYVE9O95405 1425 aa29.05■■■□□ 2.24
SHH-205ENST00000472308 LRP6O75581 1613 aa29.05■■■□□ 2.24
SHH-205ENST00000472308 FGD6Q6ZV73 1430 aa29.03■■■□□ 2.24
SHH-205ENST00000472308 ANKRD30AQ9BXX3 1397 aa29.02■■■□□ 2.24
SHH-205ENST00000472308 SLC52A1Q9NWF4 448 aa29.02■■■□□ 2.24
SHH-205ENST00000472308 PLEKHG1Q9ULL1 1385 aa29.01■■■□□ 2.24
SHH-205ENST00000472308 CHD2O14647 1828 aaKnown RBP29.01■■■□□ 2.24
SHH-205ENST00000472308 CHIC2Q9UKJ5 165 aa29.01■■■□□ 2.23
SHH-205ENST00000472308 LOC105371045A0A1W2PR82 267 aa28.99■■■□□ 2.23
SHH-205ENST00000472308 BCANQ96GW7 911 aa28.99■■■□□ 2.23
SHH-205ENST00000472308 RPRD2Q5VT52 1461 aaKnown RBP28.97■■■□□ 2.23
SHH-205ENST00000472308 MYO5BQ9ULV0 1848 aa28.97■■■□□ 2.23
SHH-205ENST00000472308 RIMS2Q9UQ26 1411 aa28.95■■■□□ 2.23
SHH-205ENST00000472308 GCC2Q8IWJ2 1684 aa28.94■■■□□ 2.22
SHH-205ENST00000472308 TMEM131LA2VDJ0 1609 aa28.94■■■□□ 2.22
SHH-205ENST00000472308 SPATA31A6Q5VVP1 1343 aa28.94■■■□□ 2.22
SHH-205ENST00000472308 ADGRL2O95490 1459 aa28.93■■■□□ 2.22
SHH-205ENST00000472308 NCOA3Q9Y6Q9 1424 aa28.93■■■□□ 2.22
SHH-205ENST00000472308 AHDC1Q5TGY3 1603 aaPredicted RBP28.92■■■□□ 2.22
SHH-205ENST00000472308 UPF1Q92900 1129 aaKnown RBP eCLIP28.92■■■□□ 2.22
SHH-205ENST00000472308 SHPRHQ149N8 1683 aa28.89■■■□□ 2.22
SHH-205ENST00000472308 PPP1R15AO75807 674 aaPredicted RBP28.89■■■□□ 2.22
SHH-205ENST00000472308 TBX22Q9Y458 520 aa28.89■■■□□ 2.22
SHH-205ENST00000472308 ADAMTS13Q76LX8 1427 aa28.88■■■□□ 2.21
SHH-205ENST00000472308 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.88■■■□□ 2.21
SHH-205ENST00000472308 ZNF772Q68DY9 489 aaPredicted RBP28.87■■■□□ 2.21
SHH-205ENST00000472308 TRIM52Q96A61 297 aa28.86■■■□□ 2.21
SHH-205ENST00000472308 MEX3CQ5U5Q3 659 aaKnown RBP28.85■■■□□ 2.21
SHH-205ENST00000472308 DIP2AQ14689 1571 aa28.84■■■□□ 2.21
SHH-205ENST00000472308 ANKRD50Q9ULJ7 1429 aa28.84■■■□□ 2.21
SHH-205ENST00000472308 C14orf37Q86TY3 774 aa28.82■■■□□ 2.2
SHH-205ENST00000472308 CADPS2Q86UW7 1296 aa28.82■■■□□ 2.2
SHH-205ENST00000472308 HDGFP51858 240 aaKnown RBP28.81■■■□□ 2.2
SHH-205ENST00000472308 C19orf44Q9H6X5 657 aa28.81■■■□□ 2.2
SHH-205ENST00000472308 PIK3R4Q99570 1358 aa28.78■■■□□ 2.2
SHH-205ENST00000472308 NUTM2DQ5VT03 806 aaPredicted RBP28.78■■■□□ 2.2
SHH-205ENST00000472308 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.78■■■□□ 2.2
SHH-205ENST00000472308 ATF3P18847 181 aa28.77■■■□□ 2.2
SHH-205ENST00000472308 BRINP3Q76B58 766 aa28.77■■■□□ 2.2
SHH-205ENST00000472308 APLP2Q06481 763 aa28.76■■■□□ 2.19
SHH-205ENST00000472308 CDK12Q9NYV4 1490 aaPredicted RBP28.76■■■□□ 2.19
SHH-205ENST00000472308 SRCAPQ6ZRS2 3230 aa28.76■■■□□ 2.19
SHH-205ENST00000472308 PTPRUQ92729 1446 aa28.76■■■□□ 2.19
SHH-205ENST00000472308 UNC13BO14795 1591 aa28.75■■■□□ 2.19
SHH-205ENST00000472308 RXRBP28702 533 aa28.75■■■□□ 2.19
SHH-205ENST00000472308 E9PCH4 1651 aa28.74■■■□□ 2.19
SHH-205ENST00000472308 CHGAP10645 457 aaKnown RBP28.73■■■□□ 2.19
SHH-205ENST00000472308 TRPM2O94759 1503 aa28.73■■■□□ 2.19
SHH-205ENST00000472308 ASXL1Q8IXJ9 1541 aa28.71■■■□□ 2.19
SHH-205ENST00000472308 DCCP43146 1447 aa28.7■■■□□ 2.19
SHH-205ENST00000472308 NUTM2BA6NNL0 878 aaPredicted RBP28.7■■■□□ 2.18
SHH-205ENST00000472308 NUTM2EB1AL46 878 aaPredicted RBP28.7■■■□□ 2.18
SHH-205ENST00000472308 NUTM2AQ8IVF1 878 aaPredicted RBP28.7■■■□□ 2.18
SHH-205ENST00000472308 AMOTL2Q9Y2J4 779 aa28.69■■■□□ 2.18
SHH-205ENST00000472308 SETD5Q9C0A6 1442 aa28.69■■■□□ 2.18
SHH-205ENST00000472308 AFF2P51816 1311 aa28.69■■■□□ 2.18
SHH-205ENST00000472308 FAM50AQ14320 339 aaKnown RBP28.68■■■□□ 2.18
SHH-205ENST00000472308 XRN1Q8IZH2 1706 aaKnown RBP28.67■■■□□ 2.18
SHH-205ENST00000472308 NHSL1Q5SYE7 1610 aa28.66■■■□□ 2.18
SHH-205ENST00000472308 MST1RQ04912 1400 aa28.66■■■□□ 2.18
SHH-205ENST00000472308 NRXN3Q9Y4C0 1643 aa28.65■■■□□ 2.18
SHH-205ENST00000472308 RGS12O14924 1447 aa28.64■■■□□ 2.18
SHH-205ENST00000472308 IQGAP3Q86VI3 1631 aa28.64■■■□□ 2.18
SHH-205ENST00000472308 SETBP1Q9Y6X0 1596 aa28.6■■■□□ 2.17
SHH-205ENST00000472308 PNPLA6Q8IY17 1366 aa28.57■■■□□ 2.16
SHH-205ENST00000472308 DDX17Q92841 729 aaKnown RBP28.55■■■□□ 2.16
SHH-205ENST00000472308 C8orf37Q96NL8 207 aa28.55■■■□□ 2.16
SHH-205ENST00000472308 METP08581 1390 aa28.54■■■□□ 2.16
SHH-205ENST00000472308 LRRC59Q96AG4 307 aaKnown RBP28.54■■■□□ 2.16
SHH-205ENST00000472308 ADGRL3Q9HAR2 1447 aa28.52■■■□□ 2.16
SHH-205ENST00000472308 RBM6P78332 1123 aaKnown RBP28.52■■■□□ 2.16
SHH-205ENST00000472308 QTRT2Q9H974 415 aaKnown RBP28.52■■■□□ 2.16
SHH-205ENST00000472308 ROCK1Q13464 1354 aa28.51■■■□□ 2.16
SHH-205ENST00000472308 NALCNQ8IZF0 1738 aa28.5■■■□□ 2.15
SHH-205ENST00000472308 NUP155O75694 1391 aa28.5■■■□□ 2.15
SHH-205ENST00000472308 LAMC1P11047 1609 aa28.43■■■□□ 2.14
SHH-205ENST00000472308 SPHKAPQ2M3C7 1700 aa28.43■■■□□ 2.14
SHH-205ENST00000472308 C1orf167Q5SNV9 1468 aa28.42■■■□□ 2.14
SHH-205ENST00000472308 ADAMTS2O95450 1211 aa28.42■■■□□ 2.14
SHH-205ENST00000472308 EP400Q96L91 3159 aa28.42■■■□□ 2.14
SHH-205ENST00000472308 NEXMIFQ5QGS0 1516 aa28.4■■■□□ 2.14
SHH-205ENST00000472308 NGLY1Q96IV0 654 aa28.4■■■□□ 2.14
SHH-205ENST00000472308 ATAD2Q6PL18 1390 aa28.38■■■□□ 2.13
SHH-205ENST00000472308 ZNF326Q5BKZ1 582 aaKnown RBP28.38■■■□□ 2.13
SHH-205ENST00000472308 SOS2Q07890 1332 aaPredicted RBP28.35■■■□□ 2.13
SHH-205ENST00000472308 CLTCL1P53675 1640 aa28.35■■■□□ 2.13
SHH-205ENST00000472308 PTCH1Q13635 1447 aa28.34■■■□□ 2.13
SHH-205ENST00000472308 USP21Q9UK80 565 aa28.33■■■□□ 2.13
SHH-205ENST00000472308 ORAI2Q96SN7 254 aa28.32■■■□□ 2.12
SHH-205ENST00000472308 FNBP4Q8N3X1 1017 aaPredicted RBP28.31■■■□□ 2.12
SHH-205ENST00000472308 ROBO2Q9HCK4 1378 aa28.31■■■□□ 2.12
SHH-205ENST00000472308 ATRNO75882 1429 aa28.31■■■□□ 2.12
SHH-205ENST00000472308 TRPC5Q9UL62 973 aaPredicted RBP28.3■■■□□ 2.12
SHH-205ENST00000472308 COL22A1Q8NFW1 1626 aaPredicted RBP28.29■■■□□ 2.12
SHH-205ENST00000472308 PRAG1Q86YV5 1406 aa28.27■■■□□ 2.12
SHH-205ENST00000472308 ITGAEP38570 1179 aa28.26■■■□□ 2.11
SHH-205ENST00000472308 MYOM2P54296 1465 aa28.26■■■□□ 2.11
SHH-205ENST00000472308 ZRANB1Q9UGI0 708 aa28.22■■■□□ 2.11
SHH-205ENST00000472308 BCL9LQ86UU0 1499 aa28.21■■■□□ 2.11
SHH-205ENST00000472308 KIF1BO60333 1816 aa28.18■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms