RNA–Protein interactions for RNA: ENST00000471037.1

SF3A1-206, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 3

Gene SF3A1, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-206ENST00000471037 RGS17Q9UGC6 210 aaPredicted RBP14.02□□□□□ -0.17
SF3A1-206ENST00000471037 UNC13BO14795 1591 aa14.01□□□□□ -0.17
SF3A1-206ENST00000471037 PLEKHG1Q9ULL1 1385 aa14.01□□□□□ -0.17
SF3A1-206ENST00000471037 PROSER2Q86WR7 435 aaPredicted RBP14.01□□□□□ -0.17
SF3A1-206ENST00000471037 GCC2Q8IWJ2 1684 aa14.01□□□□□ -0.17
SF3A1-206ENST00000471037 TMEM131LA2VDJ0 1609 aa14.01□□□□□ -0.17
SF3A1-206ENST00000471037 FAM50AQ14320 339 aaKnown RBP14□□□□□ -0.17
SF3A1-206ENST00000471037 MSH6P52701 1360 aa13.99□□□□□ -0.17
SF3A1-206ENST00000471037 RIMS2Q9UQ26 1411 aa13.98□□□□□ -0.17
SF3A1-206ENST00000471037 CHD2O14647 1828 aaKnown RBP13.98□□□□□ -0.17
SF3A1-206ENST00000471037 MYO5BQ9ULV0 1848 aa13.97□□□□□ -0.17
SF3A1-206ENST00000471037 HDGFP51858 240 aaKnown RBP13.97□□□□□ -0.17
SF3A1-206ENST00000471037 RBM33Q96EV2 1170 aaKnown RBP13.97□□□□□ -0.17
SF3A1-206ENST00000471037 NCOA3Q9Y6Q9 1424 aa13.97□□□□□ -0.17
SF3A1-206ENST00000471037 DIP2AQ14689 1571 aa13.96□□□□□ -0.18
SF3A1-206ENST00000471037 ROCK1Q13464 1354 aa13.96□□□□□ -0.18
SF3A1-206ENST00000471037 E9PCH4 1651 aa13.95□□□□□ -0.18
SF3A1-206ENST00000471037 IQGAP3Q86VI3 1631 aa13.95□□□□□ -0.18
SF3A1-206ENST00000471037 PPP1R15AO75807 674 aaPredicted RBP13.95□□□□□ -0.18
SF3A1-206ENST00000471037 BCANQ96GW7 911 aa13.95□□□□□ -0.18
SF3A1-206ENST00000471037 TBX22Q9Y458 520 aa13.95□□□□□ -0.18
SF3A1-206ENST00000471037 ADAMTS13Q76LX8 1427 aa13.94□□□□□ -0.18
SF3A1-206ENST00000471037 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.94□□□□□ -0.18
SF3A1-206ENST00000471037 SLAIN2Q9P270 581 aa13.94□□□□□ -0.18
SF3A1-206ENST00000471037 PIK3R4Q99570 1358 aa13.93□□□□□ -0.18
SF3A1-206ENST00000471037 JCADQ9P266 1359 aa13.93□□□□□ -0.18
SF3A1-206ENST00000471037 PHLPP1O60346 1717 aa13.93□□□□□ -0.18
SF3A1-206ENST00000471037 POTEAQ6S8J7 498 aa13.92□□□□□ -0.18
SF3A1-206ENST00000471037 COL16A1Q07092 1604 aaPredicted RBP13.92□□□□□ -0.18
SF3A1-206ENST00000471037 TRPM2O94759 1503 aa13.89□□□□□ -0.19
SF3A1-206ENST00000471037 CHGAP10645 457 aaKnown RBP13.88□□□□□ -0.19
SF3A1-206ENST00000471037 AHDC1Q5TGY3 1603 aaPredicted RBP13.88□□□□□ -0.19
SF3A1-206ENST00000471037 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.87□□□□□ -0.19
SF3A1-206ENST00000471037 NUP155O75694 1391 aa13.87□□□□□ -0.19
SF3A1-206ENST00000471037 CADPS2Q86UW7 1296 aa13.87□□□□□ -0.19
SF3A1-206ENST00000471037 C19orf44Q9H6X5 657 aa13.87□□□□□ -0.19
SF3A1-206ENST00000471037 SPATA31A6Q5VVP1 1343 aa13.86□□□□□ -0.19
SF3A1-206ENST00000471037 SETBP1Q9Y6X0 1596 aa13.85□□□□□ -0.19
SF3A1-206ENST00000471037 DCCP43146 1447 aa13.85□□□□□ -0.19
SF3A1-206ENST00000471037 PTPRUQ92729 1446 aa13.85□□□□□ -0.19
SF3A1-206ENST00000471037 NUTM2DQ5VT03 806 aaPredicted RBP13.85□□□□□ -0.19
SF3A1-206ENST00000471037 C14orf37Q86TY3 774 aa13.85□□□□□ -0.19
SF3A1-206ENST00000471037 LRP6O75581 1613 aa13.85□□□□□ -0.19
SF3A1-206ENST00000471037 NRXN3Q9Y4C0 1643 aa13.85□□□□□ -0.19
SF3A1-206ENST00000471037 SHPRHQ149N8 1683 aa13.85□□□□□ -0.19
SF3A1-206ENST00000471037 XRN1Q8IZH2 1706 aaKnown RBP13.84□□□□□ -0.19
SF3A1-206ENST00000471037 ATF3P18847 181 aa13.83□□□□□ -0.2
SF3A1-206ENST00000471037 AMOTL2Q9Y2J4 779 aa13.83□□□□□ -0.2
SF3A1-206ENST00000471037 SPHKAPQ2M3C7 1700 aa13.83□□□□□ -0.2
SF3A1-206ENST00000471037 SETD1AO15047 1707 aaKnown RBP13.81□□□□□ -0.2
SF3A1-206ENST00000471037 BRINP3Q76B58 766 aa13.8□□□□□ -0.2
SF3A1-206ENST00000471037 ZNF772Q68DY9 489 aaPredicted RBP13.79□□□□□ -0.2
SF3A1-206ENST00000471037 MST1RQ04912 1400 aa13.79□□□□□ -0.2
SF3A1-206ENST00000471037 ASXL1Q8IXJ9 1541 aa13.79□□□□□ -0.2
SF3A1-206ENST00000471037 ITGAEP38570 1179 aa13.78□□□□□ -0.2
SF3A1-206ENST00000471037 SETD5Q9C0A6 1442 aa13.78□□□□□ -0.2
SF3A1-206ENST00000471037 NEXMIFQ5QGS0 1516 aa13.78□□□□□ -0.2
SF3A1-206ENST00000471037 NHSL1Q5SYE7 1610 aa13.78□□□□□ -0.2
SF3A1-206ENST00000471037 METP08581 1390 aa13.77□□□□□ -0.21
SF3A1-206ENST00000471037 CLTCL1P53675 1640 aa13.77□□□□□ -0.21
SF3A1-206ENST00000471037 MEX3CQ5U5Q3 659 aaKnown RBP13.77□□□□□ -0.21
SF3A1-206ENST00000471037 ADGRL3Q9HAR2 1447 aa13.77□□□□□ -0.21
SF3A1-206ENST00000471037 ZNF326Q5BKZ1 582 aaKnown RBP13.75□□□□□ -0.21
SF3A1-206ENST00000471037 CDK12Q9NYV4 1490 aaPredicted RBP13.74□□□□□ -0.21
SF3A1-206ENST00000471037 RRBP1Q9P2E9 1410 aaKnown RBP13.73□□□□□ -0.21
SF3A1-206ENST00000471037 NALCNQ8IZF0 1738 aa13.73□□□□□ -0.21
SF3A1-206ENST00000471037 NAIPQ13075 1403 aa13.73□□□□□ -0.21
SF3A1-206ENST00000471037 PTCH1Q13635 1447 aa13.73□□□□□ -0.21
SF3A1-206ENST00000471037 PRAG1Q86YV5 1406 aa13.73□□□□□ -0.21
SF3A1-206ENST00000471037 LRRC59Q96AG4 307 aaKnown RBP13.71□□□□□ -0.21
SF3A1-206ENST00000471037 LAMC1P11047 1609 aa13.71□□□□□ -0.22
SF3A1-206ENST00000471037 KIF1BO60333 1816 aa13.71□□□□□ -0.22
SF3A1-206ENST00000471037 RXRBP28702 533 aa13.7□□□□□ -0.22
SF3A1-206ENST00000471037 UPF1Q92900 1129 aaKnown RBP eCLIP13.7□□□□□ -0.22
SF3A1-206ENST00000471037 PNPLA6Q8IY17 1366 aa13.7□□□□□ -0.22
SF3A1-206ENST00000471037 NUTM2BA6NNL0 878 aaPredicted RBP13.69□□□□□ -0.22
SF3A1-206ENST00000471037 NUTM2EB1AL46 878 aaPredicted RBP13.69□□□□□ -0.22
SF3A1-206ENST00000471037 PPARGC1BQ86YN6 1023 aaKnown RBP13.69□□□□□ -0.22
SF3A1-206ENST00000471037 NUTM2AQ8IVF1 878 aaPredicted RBP13.69□□□□□ -0.22
SF3A1-206ENST00000471037 TRIM52Q96A61 297 aa13.69□□□□□ -0.22
SF3A1-206ENST00000471037 C1orf167Q5SNV9 1468 aa13.68□□□□□ -0.22
SF3A1-206ENST00000471037 AFF2P51816 1311 aa13.68□□□□□ -0.22
SF3A1-206ENST00000471037 HFM1A2PYH4 1435 aa13.67□□□□□ -0.22
SF3A1-206ENST00000471037 VGFO15240 615 aaPredicted RBP13.67□□□□□ -0.22
SF3A1-206ENST00000471037 ROBO2Q9HCK4 1378 aa13.67□□□□□ -0.22
SF3A1-206ENST00000471037 RPGRIP1LQ68CZ1 1315 aa13.65□□□□□ -0.22
SF3A1-206ENST00000471037 DDX17Q92841 729 aaKnown RBP13.65□□□□□ -0.22
SF3A1-206ENST00000471037 SOS2Q07890 1332 aaPredicted RBP13.64□□□□□ -0.23
SF3A1-206ENST00000471037 RGS12O14924 1447 aa13.64□□□□□ -0.23
SF3A1-206ENST00000471037 PPLO60437 1756 aa13.63□□□□□ -0.23
SF3A1-206ENST00000471037 RBM6P78332 1123 aaKnown RBP13.63□□□□□ -0.23
SF3A1-206ENST00000471037 C8orf37Q96NL8 207 aa13.63□□□□□ -0.23
SF3A1-206ENST00000471037 CDC42BPGQ6DT37 1551 aa13.62□□□□□ -0.23
SF3A1-206ENST00000471037 ORAI2Q96SN7 254 aa13.61□□□□□ -0.23
SF3A1-206ENST00000471037 SLC4A1APQ9BWU0 796 aaKnown RBP13.61□□□□□ -0.23
SF3A1-206ENST00000471037 QTRT2Q9H974 415 aaKnown RBP13.61□□□□□ -0.23
SF3A1-206ENST00000471037 COL22A1Q8NFW1 1626 aaPredicted RBP13.61□□□□□ -0.23
SF3A1-206ENST00000471037 NGLY1Q96IV0 654 aa13.59□□□□□ -0.23
SF3A1-206ENST00000471037 TECPR2O15040 1411 aa13.58□□□□□ -0.24
SF3A1-206ENST00000471037 ADAMTS2O95450 1211 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms