RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 SCAF11Q99590 1463 aaKnown RBP17.5■□□□□ 0.39
VPS13D-204ENST00000469054 RIMS2Q9UQ26 1411 aa17.5■□□□□ 0.39
VPS13D-204ENST00000469054 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.5■□□□□ 0.39
VPS13D-204ENST00000469054 MED14O60244 1454 aa17.49■□□□□ 0.39
VPS13D-204ENST00000469054 ZFYVE9O95405 1425 aa17.48■□□□□ 0.39
VPS13D-204ENST00000469054 DHX57Q6P158 1386 aaKnown RBP17.48■□□□□ 0.39
VPS13D-204ENST00000469054 NPHP4O75161 1426 aaPredicted RBP17.47■□□□□ 0.39
VPS13D-204ENST00000469054 PPP1R15AO75807 674 aaPredicted RBP17.47■□□□□ 0.39
VPS13D-204ENST00000469054 NUTM2DQ5VT03 806 aaPredicted RBP17.47■□□□□ 0.39
VPS13D-204ENST00000469054 RPGRIP1LQ68CZ1 1315 aa17.47■□□□□ 0.39
VPS13D-204ENST00000469054 RGL3Q3MIN7 710 aa17.46■□□□□ 0.39
VPS13D-204ENST00000469054 NEURL4Q96JN8 1562 aa17.45■□□□□ 0.38
VPS13D-204ENST00000469054 SPATA31E1Q6ZUB1 1445 aa17.45■□□□□ 0.38
VPS13D-204ENST00000469054 BCANQ96GW7 911 aa17.43■□□□□ 0.38
VPS13D-204ENST00000469054 PLEKHG1Q9ULL1 1385 aa17.42■□□□□ 0.38
VPS13D-204ENST00000469054 VGFO15240 615 aaPredicted RBP17.42■□□□□ 0.38
VPS13D-204ENST00000469054 MYO5BQ9ULV0 1848 aa17.4■□□□□ 0.38
VPS13D-204ENST00000469054 POLR1AO95602 1720 aaPredicted RBP17.4■□□□□ 0.38
VPS13D-204ENST00000469054 KIF1BO60333 1816 aa17.4■□□□□ 0.38
VPS13D-204ENST00000469054 SLC26A8Q96RN1 970 aa17.39■□□□□ 0.37
VPS13D-204ENST00000469054 NEXMIFQ5QGS0 1516 aa17.38■□□□□ 0.37
VPS13D-204ENST00000469054 SIN3AQ96ST3 1273 aa17.38■□□□□ 0.37
VPS13D-204ENST00000469054 IQGAP1P46940 1657 aa17.37■□□□□ 0.37
VPS13D-204ENST00000469054 TBX22Q9Y458 520 aa17.37■□□□□ 0.37
VPS13D-204ENST00000469054 ZNF335Q9H4Z2 1342 aaPredicted RBP17.37■□□□□ 0.37
VPS13D-204ENST00000469054 ADGRF5Q8IZF2 1346 aa17.35■□□□□ 0.37
VPS13D-204ENST00000469054 ADAMTS13Q76LX8 1427 aa17.35■□□□□ 0.37
VPS13D-204ENST00000469054 NEUROD1Q13562 356 aa17.34■□□□□ 0.37
VPS13D-204ENST00000469054 DCAF11Q8TEB1 546 aa17.33■□□□□ 0.36
VPS13D-204ENST00000469054 STAC3Q96MF2 364 aa17.33■□□□□ 0.36
VPS13D-204ENST00000469054 KCNA6P17658 529 aa17.31■□□□□ 0.36
VPS13D-204ENST00000469054 KDM2AQ9Y2K7 1162 aa17.31■□□□□ 0.36
VPS13D-204ENST00000469054 SETBP1Q9Y6X0 1596 aa17.3■□□□□ 0.36
VPS13D-204ENST00000469054 LTBP4Q8N2S1 1624 aa17.29■□□□□ 0.36
VPS13D-204ENST00000469054 PIK3R4Q99570 1358 aa17.28■□□□□ 0.36
VPS13D-204ENST00000469054 L3MBTL2Q969R5 705 aa17.28■□□□□ 0.36
VPS13D-204ENST00000469054 MYOM2P54296 1465 aa17.28■□□□□ 0.36
VPS13D-204ENST00000469054 PPLO60437 1756 aa17.28■□□□□ 0.36
VPS13D-204ENST00000469054 CLSPNQ9HAW4 1339 aa17.27■□□□□ 0.36
VPS13D-204ENST00000469054 CERKQ8TCT0 537 aa17.27■□□□□ 0.36
VPS13D-204ENST00000469054 PIK3C2GO75747 1445 aa17.27■□□□□ 0.35
VPS13D-204ENST00000469054 DIP2AQ14689 1571 aa17.27■□□□□ 0.35
VPS13D-204ENST00000469054 METP08581 1390 aa17.27■□□□□ 0.35
VPS13D-204ENST00000469054 CCER1Q8TC90 406 aaPredicted RBP17.26■□□□□ 0.35
VPS13D-204ENST00000469054 C14orf93Q9H972 538 aaKnown RBP17.26■□□□□ 0.35
VPS13D-204ENST00000469054 NRXN3Q9Y4C0 1643 aa17.25■□□□□ 0.35
VPS13D-204ENST00000469054 NRXN1Q9ULB1 1477 aa17.25■□□□□ 0.35
VPS13D-204ENST00000469054 AMOTL2Q9Y2J4 779 aa17.25■□□□□ 0.35
VPS13D-204ENST00000469054 CFAP70Q5T0N1 1121 aa17.24■□□□□ 0.35
VPS13D-204ENST00000469054 CPS1P31327 1500 aa17.24■□□□□ 0.35
VPS13D-204ENST00000469054 ALKQ9UM73 1620 aa17.23■□□□□ 0.35
VPS13D-204ENST00000469054 IFT172Q9UG01 1749 aa17.23■□□□□ 0.35
VPS13D-204ENST00000469054 PTPRUQ92729 1446 aa17.22■□□□□ 0.35
VPS13D-204ENST00000469054 PROSER2Q86WR7 435 aaPredicted RBP17.22■□□□□ 0.35
VPS13D-204ENST00000469054 TMEM132EQ6IEE7 984 aa17.21■□□□□ 0.35
VPS13D-204ENST00000469054 TONSLQ96HA7 1378 aa17.2■□□□□ 0.34
VPS13D-204ENST00000469054 LRRC7Q96NW7 1537 aa17.2■□□□□ 0.34
VPS13D-204ENST00000469054 NWD1Q149M9 1564 aa17.19■□□□□ 0.34
VPS13D-204ENST00000469054 NKTRP30414 1462 aaKnown RBP17.18■□□□□ 0.34
VPS13D-204ENST00000469054 STRCP1A6NGW2 1772 aa17.17■□□□□ 0.34
VPS13D-204ENST00000469054 TMEM94Q12767 1356 aa17.17■□□□□ 0.34
VPS13D-204ENST00000469054 PRAG1Q86YV5 1406 aa17.17■□□□□ 0.34
VPS13D-204ENST00000469054 RBM33Q96EV2 1170 aaKnown RBP17.17■□□□□ 0.34
VPS13D-204ENST00000469054 STK26Q9P289 416 aa17.16■□□□□ 0.34
VPS13D-204ENST00000469054 IQSEC2Q5JU85 1478 aa17.16■□□□□ 0.34
VPS13D-204ENST00000469054 LRPPRCP42704 1394 aaKnown RBP17.15■□□□□ 0.34
VPS13D-204ENST00000469054 CHD2O14647 1828 aaKnown RBP17.15■□□□□ 0.34
VPS13D-204ENST00000469054 TIMELESSQ9UNS1 1208 aa17.15■□□□□ 0.34
VPS13D-204ENST00000469054 ABCC11Q96J66 1382 aa17.15■□□□□ 0.34
VPS13D-204ENST00000469054 SETD1AO15047 1707 aaKnown RBP17.14■□□□□ 0.33
VPS13D-204ENST00000469054 YTHDC2Q9H6S0 1430 aaKnown RBP17.13■□□□□ 0.33
VPS13D-204ENST00000469054 ASXL1Q8IXJ9 1541 aa17.13■□□□□ 0.33
VPS13D-204ENST00000469054 ROBO2Q9HCK4 1378 aa17.13■□□□□ 0.33
VPS13D-204ENST00000469054 NCOA3Q9Y6Q9 1424 aa17.13■□□□□ 0.33
VPS13D-204ENST00000469054 NBPF1Q3BBV0 1214 aa17.12■□□□□ 0.33
VPS13D-204ENST00000469054 NBPF8Q3BBV2 869 aa17.12■□□□□ 0.33
VPS13D-204ENST00000469054 PTCH1Q13635 1447 aa17.12■□□□□ 0.33
VPS13D-204ENST00000469054 XRN1Q8IZH2 1706 aaKnown RBP17.11■□□□□ 0.33
VPS13D-204ENST00000469054 C14orf37Q86TY3 774 aa17.11■□□□□ 0.33
VPS13D-204ENST00000469054 SIRT1Q96EB6 747 aa17.11■□□□□ 0.33
VPS13D-204ENST00000469054 TECPR2O15040 1411 aa17.11■□□□□ 0.33
VPS13D-204ENST00000469054 C19orf44Q9H6X5 657 aa17.1■□□□□ 0.33
VPS13D-204ENST00000469054 ADGRB1O14514 1584 aa17.1■□□□□ 0.33
VPS13D-204ENST00000469054 LAMC1P11047 1609 aa17.1■□□□□ 0.33
VPS13D-204ENST00000469054 UBAP1LF5GYI3 381 aa17.09■□□□□ 0.33
VPS13D-204ENST00000469054 TOM1O60784 492 aa17.09■□□□□ 0.33
VPS13D-204ENST00000469054 WAPLQ7Z5K2 1190 aa17.09■□□□□ 0.33
VPS13D-204ENST00000469054 FBXO41Q8TF61 875 aa17.09■□□□□ 0.33
VPS13D-204ENST00000469054 TRAK1Q9UPV9 953 aa17.09■□□□□ 0.33
VPS13D-204ENST00000469054 MSH6P52701 1360 aa17.09■□□□□ 0.33
VPS13D-204ENST00000469054 FAM135BQ49AJ0 1406 aa17.06■□□□□ 0.32
VPS13D-204ENST00000469054 PRAM1Q96QH2 718 aa17.06■□□□□ 0.32
VPS13D-204ENST00000469054 PLEKHH1Q9ULM0 1364 aa17.05■□□□□ 0.32
VPS13D-204ENST00000469054 POGKQ9P215 609 aa17.05■□□□□ 0.32
VPS13D-204ENST00000469054 ROCK2O75116 1388 aaKnown RBP17.04■□□□□ 0.32
VPS13D-204ENST00000469054 ATF3P18847 181 aa17.04■□□□□ 0.32
VPS13D-204ENST00000469054 CADPS2Q86UW7 1296 aa17.04■□□□□ 0.32
VPS13D-204ENST00000469054 ADGRL3Q9HAR2 1447 aa17.04■□□□□ 0.32
VPS13D-204ENST00000469054 DLC1Q96QB1 1528 aa17.03■□□□□ 0.32
VPS13D-204ENST00000469054 KIAA1210Q9ULL0 1709 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms